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Report for CCDS36667.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36667.1 Public Mus musculus 13 Cplx2 23 108 98 CCDS HistoryNCBI Gene:12890Re-query CCDS DB by CCDS ID:36667.1Re-query CCDS DB by GeneID:12890See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36667.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026985.8 ENSMUSP00000026985.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026985.8Link to Ensembl Protein Viewer:ENSMUSP00000026985.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000026985Re-query CCDS DB by Protein ID:ENSMUSP00000026985
Original member Current member NCBI NM_001362218.1 NP_001349147.1 Accepted alive Link to Nucleotide Sequence:NM_001362218.1Link to Protein Sequence:NP_001349147.1Re-query CCDS DB by Nucleotide ID:NM_001362218Re-query CCDS DB by Protein ID:NP_001349147Link to BLAST:NP_001349147.1
Original member Current member NCBI NM_009946.3 NP_034076.1 Accepted alive Link to Nucleotide Sequence:NM_009946.3Link to Protein Sequence:NP_034076.1Re-query CCDS DB by Nucleotide ID:NM_009946Re-query CCDS DB by Protein ID:NP_034076Link to BLAST:NP_034076.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001349147.1 134 P84086 134 100% 0 0
NP_034076.1 134 P84086 134 100% 0 0

Chromosomal Locations for CCDS 36667.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 54378669 54378699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54378812 54378987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54379512 54379709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (405 nt):
ATGGACTTCGTCATGAAGCAAGCCCTCGGAGGGGCCACCAAGGACATGGGGAAGATGCTGGGGGGAGAGG
AGGAGAAGGACCCAGACGCACAGAAGAAGGAGGAGGAGCGGCAGGAGGCCCTGAGGCAGCAGGAGGAAGA
GCGCAAGGCGAAACACGCCCGCATGGAAGCCGAGCGCGAGAAGGTCCGGCAGCAGATCCGAGACAAGTAT
GGGCTGAAGAAGAAGGAAGAGAAAGAGGCAGAGGAGAAGGCAGCCCTGGAACAGCCCTGCGAGGGAAGCC
TGACCCGACCCAAGAAGGCCATCCCTGCAGGCTGTGGGGACGAGGAGGAGGAGGAAGAGGAGAGCATCCT
GGACACAGTGCTCAAATATCTGCCAGGGCCGCTGCAGGACATGTTCAAGAAGTAA

Translation (134 aa):
MDFVMKQALGGATKDMGKMLGGEEEKDPDAQKKEEERQEALRQQEEERKAKHARMEAEREKVRQQIRDKY
GLKKKEEKEAEEKAALEQPCEGSLTRPKKAIPAGCGDEEEEEEESILDTVLKYLPGPLQDMFKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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