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Report for CCDS29720.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29720.1 Public Mus musculus 19 Smarca2 23 108 98 CCDS HistoryNCBI Gene:67155Re-query CCDS DB by CCDS ID:29720.1Re-query CCDS DB by GeneID:67155See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29720.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025862.14 ENSMUSP00000025862.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025862.14Link to Ensembl Protein Viewer:ENSMUSP00000025862.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000025862Re-query CCDS DB by Protein ID:ENSMUSP00000025862
Original member NCBI NM_011416.2 NP_035546.2 Updated not alive Link to Nucleotide Sequence:NM_011416.2Link to Protein Sequence:NP_035546.2Re-query CCDS DB by Nucleotide ID:NM_011416Re-query CCDS DB by Protein ID:NP_035546
Current member NCBI NM_011416.3 NP_035546.2 Accepted alive Link to Nucleotide Sequence:NM_011416.3Link to Protein Sequence:NP_035546.2Re-query CCDS DB by Nucleotide ID:NM_011416Re-query CCDS DB by Protein ID:NP_035546Link to BLAST:NP_035546.2

Chromosomal Locations for CCDS 29720.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 26619720 26619944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 26623881 26624010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 26630670 26631131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 26640388 26640649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 26647021 26647147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 26648984 26649157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 26651549 26651722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 26654341 26654511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 26664051 26664104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 26668753 26668883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 26669114 26669171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 26671084 26671184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 26672699 26672846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 26676634 26676797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 26678316 26678382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 26679074 26679184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 26681871 26682113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 26683809 26683922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 26691345 26691452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 26692181 26692267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 26696176 26696222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 26698346 26698512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 26706068 26706231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 26710458 26710685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 26716115 26716192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 26720729 26720947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 26751824 26752041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 26770938 26771043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 26771508 26771609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 26774173 26774305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 26776101 26776243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 26777335 26777370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4752 nt):
ATGTCCACACCCACAGACCCAGCAGCAATGCCCCATCCTGGGCCCTCCCCGGGGCCTGGACCCTCTCCTG
GACCAATTCTGGGGCCTAGTCCAGGACCAGGACCATCCCCAGGTTCTGTGCACAGCATGATGGGTCCTAG
TCCCGGACCTCCCAGCGTCTCACATCCTCTGTCAACGATGGGCTCTGCAGACTTCCCACAGGAAGGCATG
CACCAATTACATAAGCCCATGGATGGGATACATGACAAAGGGATTGTAGAAGATGTCCACTGTGGATCCA
TGAAGGGCACCAGCATGCGCCCCCCACACCCAGGAATGGGCCCTCCACAGAGCCCCATGGACCAGCACAG
CCAAGGTTATATGTCACCACATCCGTCTCCTCTGGGAGCCCCGGAGCACGTCTCTAGCCCTATATCTGGA
GGAGGCCCAACCCCACCCCAGATGCCACCGAGCCAGCCAGGGGCACTCATCCCAGGAGATCCGCAGGCCA
TGAACCAGCCTAACAGAGGTCCCTCGCCTTTCAGTCCTGTGCAGCTGCATCAGCTTCGAGCTCAGATTTT
AGCTTACAAAATGTTGGCCAGGGGCCAGCCTCTCCCTGAAACTCTGCAGCTGGCAGTCCAGGGAAAAAGG
ACCTTGCCTGGCATGCAGCAGCAGCAGCAGCAACAACAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAACAGCAGCAACAACAGCAGCCCCAGCAGCCTCAGCAGCAGGCTCAGGCACAGCCCCAGCAGCAGCA
GCAACAGCAGCAGCAGCCAGCTCTTGTTAGCTATAATCGACCATCTGGCCCCGGGCAGGAGCTGCTACTG
AGTGGCCAGAGCGCTCCGCAGAAGCTGTCAGCACCAGCACCAAGCGGCCGACCTTCACCGGCACCCCAGG
CCGCCGTCCAGCCCACGGCCACAGCGGTGCCCGGGCCCTCCGTGCAGCAGCCCGCCCCAGGGCAGCCGTC
TCCGGTCCTACAGCTGCAACAGAAGCAGAGCCGCATCAGCCCCATCCAGAAACCGCAAGGCCTGGACCCG
GTGGAGATCCTGCAGGAACGAGAGTACAGACTTCAAGCTCGCATCGCTCATAGGATACAAGAACTGGAAA
GTCTGCCTGGTTCCTTGCCACCAGATTTACGCACCAAAGCAACCGTGGAACTGAAAGCACTTCGCTTACT
CAACTTCCAACGTCAGCTGAGACAGGAGGTGGTGGCCTGCATGCGGAGGGACACCACCCTGGAGACGGCC
CTCAACTCCAAAGCATATAAGCGGAGCAAGCGCCAGACCCTGCGTGAGGCACGCATGACAGAGAAACTGG
AGAAGCAGCAGAAGATAGAACAGGAGAGGAAACGCCGGCAGAAACACCAGGAATACCTGAACAGTATTTT
GCAACATGCAAAAGATTTTAAGGAATATCACCGGTCTGTGGCCGGGAAGATCCAGAAGCTCTCCAAAGCA
GTGGCGACTTGGCATGCTAACACAGAAAGGGAGCAGAAGAAGGAGACGGAGCGGATCGAGAAGGAGAGAA
TGCGGAGGCTGATGGCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCT
CGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAG
GCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAGAAGGCTGAAGAGAATGCAGAGGGAG
GGGAACCTGCCCTGGGACCAGATGGAGAGCCAATAGATGAAAGCAGCCAGATGAGTGACCTGCCTGTCAA
AGTGACACACACAGAAACTGGCAAGGTCCTCTTTGGACCAGAAGCACCCAAAGCAAGTCAGCTGGATGCC
TGGCTGGAGATGAATCCTGGTTACGAAGTTGCACCCAGATCTGACAGTGAAGAGAGTGAATCGGACTACG
AGGAGGAGGATGAAGAAGAAGAGTCCAGTAGGCAGGAAACCGAGGAGAAGATACTGCTGGATCCCAACAG
TGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATCATTGAGACTGCGAAGCAGGACGTGGACGACGAATAC
AGCATGCAGTACAGTGCCAGAGGCTCTCAGTCCTACTACACGGTGGCTCACGCTATCTCTGAGAGGGTGG
AGAAGCAGTCTGCCCTCCTCATTAACGGCACCCTAAAGCATTACCAGCTCCAGGGCCTGGAATGGATGGT
TTCCCTGTATAATAACAATCTGAACGGAATCTTAGCTGATGAAATGGGGCTAGGCAAGACCATCCAGACC
ATTGCACTCATCACGTATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCATCGTCCCCCTCT
CGACTCTGTCTAACTGGACATATGAATTTGACAAATGGGCTCCTTCTGTGGTGAAAATTTCTTACAAGGG
TACCCCTGCCATGCGACGCTCCCTCGTTCCCCAGCTACGGAGTGGCAAATTCAATGTCCTCCTGACTACT
TACGAGTACATTATAAAAGACAAGCACATTCTTGCAAAGATTCGGTGGAAGTACATGATCGTGGACGAAG
GCCACCGGATGAAGAATCACCACTGCAAGCTAACCCAGGTCCTGAACACACACTATGTGGCCCCCAGGCG
GATCCTTCTGACTGGGACCCCACTGCAGAATAAGCTTCCGGAACTCTGGGCCCTCCTCAACTTCCTCCTC
CCTACAATCTTCAAGAGTTGCAGCACATTTGAGCAGTGGTTTAATGCTCCATTTGCCATGACCGGTGAAA
GGGTGGACCTGAACGAAGAAGAAACGATTTTGATCATCAGGCGTCTACACAAGGTGCTGAGACCCTTTTT
ACTGAGGAGGCTGAAGAAAGAGGTTGAGTCTCAGCTTCCGGAAAAGGTTGAGTATGTGATCAAGTGTGAC
ATGTCAGCTCTGCAGAAGATTCTGTACCGTCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTG
AGAAAGATAAGAAGGGGAAAGGAGGTGCCAAGACACTTATGAACACCATCATGCAGCTGAGAAAAATATG
CAACCACCCATATATGTTTCAGCACATTGAGGAATCCTTTGCTGAACACCTGGGCTATTCGAATGGGGTC
ATCAATGGGGCTGAGCTGTATCGGGCCTCGGGAAAGTTTGAGCTGCTTGATCGTATTCTGCCCAAATTGA
GAGCGACTAACCACCGCGTGCTGCTTTTCTGCCAGATGACGTCACTCATGACCATTATGGAGGATTACTT
TGCTTTTCGGAACTTCCTGTACCTGCGCCTTGACGGCACCACCAAGTCTGAAGATCGTGCTGCTTTGCTA
AAGAAATTCAATGAACCTGGGTCCCAGTATTTCATTTTCTTGCTGAGCACAAGAGCAGGGGGCCTGGGCT
TAAATCTTCAGGCGGCAGACACGGTGGTCATATTTGACAGCGACTGGAATCCTCACCAGGATCTGCAGGC
CCAAGACCGAGCTCACCGCATTGGCCAACAAAACGAGGTCCGGGTGCTGAGGCTTTGCACCGTCAACAGT
GTGGAGGAAAAGATTCTCGCGGCTGCCAAGTACAAGCTGAACGTGGATCAGAAGGTTATCCAAGCAGGCA
TGTTTGACCAGAAGTCATCCAGCCACGAGCGGAGGGCCTTCCTGCAGGCCATTCTGGAGCACGAGGAGGA
GAATGAGGAAGAAGATGAGGTACCAGACGACGAGACCCTGAACCAGATGATTGCTCGCCGGGAGGAAGAA
TTTGATCTTTTTATGCGCATGGACATGGACCGGCGGAGGGAGGATGCCCGGAACCCGAAGCGCAAACCCC
GCTTGATGGAGGAAGATGAGCTGCCCTCCTGGATTATCAAGGATGACGCCGAAGTGGAAAGGCTCACCTG
TGAAGAAGAGGAGGAGAAGATATTTGGGAGGGGCTCTCGCCAGCGCCGGGATGTGGACTACAGTGATGCC
CTCACCGAGAAGCAATGGCTCAGGGCCATCGAAGACGGCAATTTGGAAGAAATGGAAGAGGAGGTACGGC
TTAAGAAGAGAAAAAGACGAAGAAATGTGGATAAAGACCCCGTGAAGGAAGATGTGGAAAAAGCGAAGAA
AAGAAGAGGCCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACGAAGCAGATGAACGCC
ATCATTGATACTGTGATAAACTACAAAGACAGTTCAGGGCGACAGCTCAGTGAAGTCTTCATTCAGTTAC
CTTCCAGGAAAGACTTACCAGAATACTATGAATTAATTAGGAAGCCAGTGGATTTCAAAAAGATAAAGGA
GCGAATCCGTAATCATAAGTATCGGAGCCTGGGAGACCTGGAGAAAGACGTCATGCTTCTCTGTCACAAC
GCACAGACATTCAACTTGGAAGGATCCCAGATCTACGAAGACTCCATTGTCCTACAGTCAGTGTTTAAGA
GTGCTCGGCAGAAAATTGCCAAAGAAGAAGAGAGTGAGGAAGAAAGCAATGAAGAAGAGGAAGAAGATGA
TGAAGAGGAGTCGGAGTCAGAGGCGAAATCTGTGAAGGTGAAAATCAAGCTGAATAAAAAGGAAGAGAAA
GGCCGGGACACAGGGAAGGGCAAGAAGCGGCCAAACCGAGGCAAAGCCAAACCCGTCGTGAGCGATTTTG
ACAGTGACGAGGAACAGGAAGAGAACGAACAGTCAGAAGCAAGTGGAACTGATAACGAGTGA

Translation (1583 aa):
MSTPTDPAAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPLSTMGSADFPQEGM
HQLHKPMDGIHDKGIVEDVHCGSMKGTSMRPPHPGMGPPQSPMDQHSQGYMSPHPSPLGAPEHVSSPISG
GGPTPPQMPPSQPGALIPGDPQAMNQPNRGPSPFSPVQLHQLRAQILAYKMLARGQPLPETLQLAVQGKR
TLPGMQQQQQQQQQQQQQQQQQQQQQQQQQQPQQPQQQAQAQPQQQQQQQQQPALVSYNRPSGPGQELLL
SGQSAPQKLSAPAPSGRPSPAPQAAVQPTATAVPGPSVQQPAPGQPSPVLQLQQKQSRISPIQKPQGLDP
VEILQEREYRLQARIAHRIQELESLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVVACMRRDTTLETA
LNSKAYKRSKRQTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLSKA
VATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQ
AQAAKEKKKRRRRKKKAEENAEGGEPALGPDGEPIDESSQMSDLPVKVTHTETGKVLFGPEAPKASQLDA
WLEMNPGYEVAPRSDSEESESDYEEEDEEEESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEY
SMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQT
IALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTT
YEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLL
PTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCD
MSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGV
INGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALL
KKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNS
VEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIARREEE
FDLFMRMDMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKIFGRGSRQRRDVDYSDA
LTEKQWLRAIEDGNLEEMEEEVRLKKRKRRRNVDKDPVKEDVEKAKKRRGRPPAEKLSPNPPKLTKQMNA
IIDTVINYKDSSGRQLSEVFIQLPSRKDLPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHN
AQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEEESEEESNEEEEEDDEEESESEAKSVKVKIKLNKKEEK
GRDTGKGKKRPNRGKAKPVVSDFDSDEEQEENEQSEASGTDNE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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