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Report for CCDS41015.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41015.2 Public Mus musculus X Renbp 23 108 98 CCDS HistoryNCBI Gene:19703Re-query CCDS DB by CCDS ID:41015.2Re-query CCDS DB by GeneID:19703See the combined annotation on chromosome X in Sequence Viewer

Public Note for CCDS 41015.2
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript data. The updated start codon, which adds 1 aa to the protein, is only conserved in mouse and rat, and it has a weak Kozak signal. It is possible that ribosomal leaky scanning may allow the better conserved downstream start codon to be used some of the time. There is no experimental evidence indicating which start codon is preferentially used in vivo.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 41015.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000116578.7 ENSMUSP00000112277.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000116578.7Link to Ensembl Protein Viewer:ENSMUSP00000112277.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000116578Re-query CCDS DB by Protein ID:ENSMUSP00000112277
Original member NCBI NM_023132.3 NP_075621.3 Updated not alive Link to Nucleotide Sequence:NM_023132.3Link to Protein Sequence:NP_075621.3Re-query CCDS DB by Nucleotide ID:NM_023132Re-query CCDS DB by Protein ID:NP_075621
Current member NCBI NM_023132.4 NP_075621.3 Accepted alive Link to Nucleotide Sequence:NM_023132.4Link to Protein Sequence:NP_075621.3Re-query CCDS DB by Nucleotide ID:NM_023132Re-query CCDS DB by Protein ID:NP_075621Link to BLAST:NP_075621.3

Chromosomal Locations for CCDS 41015.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 73922139 73922263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73922351 73922438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73926216 73926347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73927813 73927988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73928279 73928360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73929116 73929340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73929681 73929853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73930005 73930080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73930187 73930262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73930408 73930517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73930714 73930743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1293 nt):
ATGATGGACCTAGGACTCCTAATGTTACAGGACATGGAGAAGGAACGGGAGACACTGCAGGTCTGGAAGA
AGCGTGTGGAACAAGAGCTTGATCGTGTGATCGCTTTCTGGATGGAGCATTCCCATGACCAGGAACACGG
GGGCTTCTTCACATGTCTTGGCCGTGATGGGAAGGTATATGATCACCTCAAATATGTTTGGCTGCAGGGG
AGGCAGGTATGGATGTATTGTCGCTTATACCGCAGTTTTGAGCGCTTCCGCCGTGTTGAGCTTCTGGATG
CAGCAAGAGCAGGTGGTGAATTTTTGCTGCGTTATGCCCGGGTGGCACCACCTGGCAAGAAATGTGCTTT
TGTGCTGACTCGGGATGGCCGGCCAGTGAAGGTGCAGCGGACCATTTTCAGCGAGTGCTTCTACACCATG
GCCATGAATGAACTGTGGAAAGTAACGGGGGAAGTGCGTTATCAGAGTGAAGCCATAGAGATGATGGATC
AGATCATCCACTGGGTACGGGAGGACCCGGCTGGGTTGGGCCGGCCTCAGCTCTCAGGGGCACTGGCCAC
AGAGCCCATGGCAGTGCCCATGATGCTGCTCAGCCTGGTGGAGCAGCTTGGAGAAGAAGATGAGGAGCTG
ACCAACATGTATGCAGAACTAGGGGACTGGTGTGTCCACAGGATTCTTCAGCATGTCCAGAGGGATGGAC
AAGTTGTACTGGAGAATGTATCAGAGGATGGAAAAGAGCTTCCTGGTTGCCTTGGAAGACATCAGAACCC
AGGCCACACACTGGAAGCTGGCTGGTTTCTGCTCCAGTATGCCCTCAGGAAAGGTGACCCCAAACTTCGA
ATGCACATCATTGACAAGTTTCTCTTATTGCCTTTCCACTCTGGATGGGACCCTGAACATGGAGGCCTCT
TCTACTTCCAGGATGCGGATGGTCTCTGCCCTACCCAGCTGGAATGGAACATGAAGCTGTGGTGGCCACA
CAGTGAAGCCATGATTGCCTTCCTCATGGGTTATAGTGACAGTGGGGACCCTGCCTTGCTGCATCTCTTC
TACAAGGTGGCTGAGTACACCTTCCGCCAGTTTCGTGATCCTGAGTATGGGGAATGGTTTGGCTACCTGA
ACCAAGAGGGAAAGGTGGCCCTCACCATCAAGGGAGGTCCTTTTAAAGGCTGCTTCCATGTGCCGCGGTG
CCTGGCCATGTGCGAGCAGATTCTAGGAGCCCTACTCCAACGCCTTGAGCCCGCCCCCCTCGACTCCTCG
CCCGCTGTCTCTACCCATGAAGGCTCGAAATAA

Translation (430 aa):
MMDLGLLMLQDMEKERETLQVWKKRVEQELDRVIAFWMEHSHDQEHGGFFTCLGRDGKVYDHLKYVWLQG
RQVWMYCRLYRSFERFRRVELLDAARAGGEFLLRYARVAPPGKKCAFVLTRDGRPVKVQRTIFSECFYTM
AMNELWKVTGEVRYQSEAIEMMDQIIHWVREDPAGLGRPQLSGALATEPMAVPMMLLSLVEQLGEEDEEL
TNMYAELGDWCVHRILQHVQRDGQVVLENVSEDGKELPGCLGRHQNPGHTLEAGWFLLQYALRKGDPKLR
MHIIDKFLLLPFHSGWDPEHGGLFYFQDADGLCPTQLEWNMKLWWPHSEAMIAFLMGYSDSGDPALLHLF
YKVAEYTFRQFRDPEYGEWFGYLNQEGKVALTIKGGPFKGCFHVPRCLAMCEQILGALLQRLEPAPLDSS
PAVSTHEGSK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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