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Report for CCDS40458.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40458.1 Public Mus musculus 8 Plekhg4 23 108 98 CCDS HistoryNCBI Gene:102075Re-query CCDS DB by CCDS ID:40458.1Re-query CCDS DB by GeneID:102075See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 40458.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000014927.7 ENSMUSP00000014927.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000014927.7Link to Ensembl Protein Viewer:ENSMUSP00000014927.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000014927Re-query CCDS DB by Protein ID:ENSMUSP00000014927
Original member Current member NCBI NM_001081333.2 NP_001074802.1 Accepted alive Link to Nucleotide Sequence:NM_001081333.2Link to Protein Sequence:NP_001074802.1Re-query CCDS DB by Nucleotide ID:NM_001081333Re-query CCDS DB by Protein ID:NP_001074802Link to BLAST:NP_001074802.1

Chromosomal Locations for CCDS 40458.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 105375381 105375855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105376016 105376111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105376190 105376313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105376420 105376513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105376594 105376668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105376749 105376865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105377037 105377135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105377225 105377373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105377539 105377677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105377767 105377883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105378300 105378482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105378681 105379186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105379255 105379501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105380123 105380212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105380294 105380515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105380602 105380772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105380851 105381028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105381395 105381511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105381634 105381858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105381941 105382056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105382236 105382241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3546 nt):
ATGGAAGGGCCTCTTGAGTGTGGGGATGTGTCCCCAGACTCCCAGGGCCATGTTGCAGATGGGAAGAGAT
TTGCTGTGTGCAGTTTCAGGAACACCCGGAAGGAGGAGGAACCTGCTCACGAGATACAGGCTATGGACCC
AAGACCTTCAAGACCAGCAGCAGGGGCAACCCAAGGCGTAGGGCTACAGGGGGATTTCTTGGCCAAGGAG
CCTCAATCGCTTCCGGAACAAAGGGCTGAGGATGGGCCACGGGGCTACCAGAGGAGCATAATAGGAGCCC
CCCCAACCCAGTCAGAGGAGCCAGCCTTCTCTGAATTGGAAAACCTCTTGTGTTCTGGGTCCTCTCACCT
TAACCTGACACAGGGTGACAATGACTATCGAGGGGAAGGCTTGATAGGGGACCCAGGTCCAGGCAGAACG
CTGCCAGCTGGCTGTAGCCCTTTATCAGAGACATCACCAAAGCTACTGGAGGCAGACCCTAGTGGATCCA
GCTTCCCTAAGCCTGCTGACTGTCTCCTAGCTCGAGACCTCGCCTGGGAGCTACTGGCCAGTGGCATGGC
TGCCCTACCAGGGACACGGGATGTCGAAGGCCGAGCGGTGTTGCTTCTGTGTGCCCACAGCCCAGCTTGG
CTCCATCCCAAGTCTAATAGCCATGAGCTGCTGAGCCTTTTGTTTTACCTGCGAGGCATCCCCAGGCCTG
AAGTGCAGGCACTGGGCCTGACCGTACTAGTCGATGCCCGAGTCTGCTCGCCGAGCTCTTCCCTCACCTG
GGGCCTCAGCCGGCTACAGGAAGCATCCCCGGGGTCTGTACAACAAGTGCTGCTCATTGGAAAGATGCCA
GAGGACGTGCCTGTCGGGCTTCAGTGGAAGCAGCTACGTTCTCACCAGAGCCTGCTGACCCACATTCCTA
ACGTGGAGTTGCCTACTTCGCTAGGAGGGAGCCTGTCTTACTGCCACCAAGGCTGGCTGGATTTCCGGAT
GCGTCTGGAAGCCCTGCAGCAGAGTTGCCAGGTGGCTTGTGCCCTGCTTCAGGGTGTCATTGACAGTATG
AAGGCACTGCGGCCACCCATGGAGTCTGGAGAAGTCGCTCAGCTGCTACAGCAGACACAGTCCCTCATGC
AGCAGGTATTAGATTCGCCACAGTTGTCATGGTTACAAAGCCAGGGAAGCCAGGAGCTGGCATGGTTGAA
GCAAGGGACGCCCCGGGTGACCCTGAGCCCCGATTACAGGTCTGCAGTAGACAAGGCTGATGCGCTCTAC
GGTCAGGTGGATGAACTTTTGCATCAGCTAGCCCTGAAGAGCAACCAGCGAATCCGGGCCCTCGAGCTCC
TGCAAGCGCTGGAAGCCCAGGAGGGTGTGCTGCGCCAGATTGAAGTATGGTTACAGGAGGTGGGTTGGCC
AGGAGTGGAGGAACCAGGGGAGCCCTCGCTCGACACGCTGCTCCAGGCTCAAGGCCCTTTTCAAGAGCTG
GACCTGGTTGCCCAGGAACAGGTCACGCAAGGGGAGAAGTTACTGCAGCCCCTGGTTGGCTTGGAGGCTG
CTGAACTGGGGTCCCCTGGAAAGCGTTTTCTGGCCCTGAGATCCCAGCTGACGGAATTTTCCAGAGCTTT
GGCCCAGCGGCGCCAGCGGTTGGCAGATGCTGAGAAGCTCTTTCAGTTCTTCAAGCAGGCCTCGACGTGG
ACCGAGGAGGGGCGGCGGCTACTGACAGAGCTGGAGCAGGAGCGCCCAGAGGTGGTGCTGCAGCGGCTGC
AGCTGCACTGGACCAGACACCCTGACTTGCCCCCTGCCCACTTCCGGAAAATGTGGGCTCTGGCCACAGG
CCTGGGCTCTGAAGGCATCCGCCAGGAATGTCGCTGTGCCTGGGCACAGTGCCAGGACACCTGGTTGGCT
CTGGACCAAAAGCGTGAGGCTGCACTGAAGCCGATGCCAGCAACGAACAACACCGCTACTTTGTATGTCA
GGCGGGCTCCTGCTGTACCCACTGTCCCTCCACTGCGGAAGGCCTACAGCTTCGACCGGAATCTGGGGAG
GCATCTCCAAGATGTTTCCAGTCGTGGCCACTGTGCAGCCATTGTTACTGACTGCCACAGACCTGAGGCC
AGAGGAGGTGTCCGGCCCAGGTCGTCTCCTCCTGTGCCTCTTTCAGGCAGCTCTGACTTCAGGAGCCCCA
ACAGGCTACAGCTAGTATTGGCGGAGATGGTGGCCACAGAGCGTGAGTATGTCCGGGCCCTTGACTATAC
CATACAGAACTACTTCCCTGAGTTAGATCGACCCGATGTGCCCCAGGGCCTCCGTGGCCAGCGTGCGCAC
CTCTTTGGCAACCTTGAAAAGCTTCGGGACTTCCACTACAATTTCTTCCTGCGTGAGCTAGAGGCTTGCA
CCCGGCACCCACCTCGAGTGGCTCATGCCTTCCTGCGCCATAGGGTGCAGTTTGGAATGTATGCCCTCTA
CAGCAAGAACAAACCTCGTTCTGATGCTCTGATGACAAACTATGGTCACACCTTCTTTAAGGAGAAGCAG
CAAGCACTGGGGGACCACCTGGACTTGGCTTCCTACCTACTGAAGCCCATCCAGCACATGAGCAAGTATG
CCTTACTGCTGCAGGAGCTGGCAAGGGCCTGTGGGGGCCCAGCGCAAGAGCTGGGTGCCCTCCAGGCAGC
CCAGAGCCTTGTGCACTTCCAGCTGAGACACGGCAATGACCTGCTAGCCATGGATGCCATCCAGGGCTGT
GACGTAAACCTCAAGGAACAGGGCCAGTTGGTACGGCAGGATGAGTTCACAGTGCGGGCTGGGCGCCACA
AAGCCTGTCGTCGCGTTTTCCTGTTTGAGGAGCTGCTGCTCTTCAGCAAGCCCCGCCGTGGGCCTGCAGG
GGTTGACATATTCACCTACAAGCGATCCTTCAAAATGGCAGACCTCGGCCTCACTGAGTGCTGTGGGGAA
AGCCAACTGCGCTTTGAAATCTGGTTCCGACGACGCAAGGCCAGGGACCTGTTTGTGCTGCAGGCCTCCG
ATGTGGCCACCAAACAAGCCTGGACAGCCGATATCTCCCGTCTCCTGTGGAGACAGGCTGTCCATAACAA
GGAGGTGCGCATGGCTGAGATGGCATCCATGGGTGTGGGGAGCAAAGCCTTCTGGGACATTGCCCCCAGT
GAGGAAGCTATCAATGACCGCAACATCAACTATGTGCTGAAGAGACGAGATGTTCGCTCTAGGGCCTCCA
TTGCTGTGGCCCCATTTGACTGTGACAACCCTTATCTGGGTGCCTTGGGCTCCCTTCCTGGAGACCGTGC
CTCTGGCTCTGTTCTGGGCTCTCTTAATCTACACCTGTACAGAGATCCAGCTCTTATGGGTGGTCACTGG
TCCTTGTATCCACCCAACTTCTCAGAGGAAGCATCACTAGATTTGGGCAGCCAGCCTTCTTTGACTCCCG
AGGACTCAGAGGTCTCATCCCAGTGCCCATCAGCCAGTGGCTCTAGTGATTCTGACAGCAGCTGTGTGTC
AGGGCAGACCATGGGCAGAGGCCTTGAGGATTTGTCCTGTGTTTGA

Translation (1181 aa):
MEGPLECGDVSPDSQGHVADGKRFAVCSFRNTRKEEEPAHEIQAMDPRPSRPAAGATQGVGLQGDFLAKE
PQSLPEQRAEDGPRGYQRSIIGAPPTQSEEPAFSELENLLCSGSSHLNLTQGDNDYRGEGLIGDPGPGRT
LPAGCSPLSETSPKLLEADPSGSSFPKPADCLLARDLAWELLASGMAALPGTRDVEGRAVLLLCAHSPAW
LHPKSNSHELLSLLFYLRGIPRPEVQALGLTVLVDARVCSPSSSLTWGLSRLQEASPGSVQQVLLIGKMP
EDVPVGLQWKQLRSHQSLLTHIPNVELPTSLGGSLSYCHQGWLDFRMRLEALQQSCQVACALLQGVIDSM
KALRPPMESGEVAQLLQQTQSLMQQVLDSPQLSWLQSQGSQELAWLKQGTPRVTLSPDYRSAVDKADALY
GQVDELLHQLALKSNQRIRALELLQALEAQEGVLRQIEVWLQEVGWPGVEEPGEPSLDTLLQAQGPFQEL
DLVAQEQVTQGEKLLQPLVGLEAAELGSPGKRFLALRSQLTEFSRALAQRRQRLADAEKLFQFFKQASTW
TEEGRRLLTELEQERPEVVLQRLQLHWTRHPDLPPAHFRKMWALATGLGSEGIRQECRCAWAQCQDTWLA
LDQKREAALKPMPATNNTATLYVRRAPAVPTVPPLRKAYSFDRNLGRHLQDVSSRGHCAAIVTDCHRPEA
RGGVRPRSSPPVPLSGSSDFRSPNRLQLVLAEMVATEREYVRALDYTIQNYFPELDRPDVPQGLRGQRAH
LFGNLEKLRDFHYNFFLRELEACTRHPPRVAHAFLRHRVQFGMYALYSKNKPRSDALMTNYGHTFFKEKQ
QALGDHLDLASYLLKPIQHMSKYALLLQELARACGGPAQELGALQAAQSLVHFQLRHGNDLLAMDAIQGC
DVNLKEQGQLVRQDEFTVRAGRHKACRRVFLFEELLLFSKPRRGPAGVDIFTYKRSFKMADLGLTECCGE
SQLRFEIWFRRRKARDLFVLQASDVATKQAWTADISRLLWRQAVHNKEVRMAEMASMGVGSKAFWDIAPS
EEAINDRNINYVLKRRDVRSRASIAVAPFDCDNPYLGALGSLPGDRASGSVLGSLNLHLYRDPALMGGHW
SLYPPNFSEEASLDLGSQPSLTPEDSEVSSQCPSASGSSDSDSSCVSGQTMGRGLEDLSCV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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