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Report for CCDS38814.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38814.1 Public Mus musculus 4 Cyp2j11 23 108 98 CCDS HistoryNCBI Gene:100066Re-query CCDS DB by CCDS ID:38814.1Re-query CCDS DB by GeneID:100066See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38814.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000015368.7 ENSMUSP00000132180.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000015368.7Link to Ensembl Protein Viewer:ENSMUSP00000132180.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000015368Re-query CCDS DB by Protein ID:ENSMUSP00000132180
Original member Current member NCBI NM_001004141.2 NP_001004141.2 Accepted alive Link to Nucleotide Sequence:NM_001004141.2Link to Protein Sequence:NP_001004141.2Re-query CCDS DB by Nucleotide ID:NM_001004141Re-query CCDS DB by Protein ID:NP_001004141Link to BLAST:NP_001004141.2

Chromosomal Locations for CCDS 38814.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 96294815 96294993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 96297611 96297749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 96307261 96307448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 96316299 96316440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 96319210 96319386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 96339088 96339248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 96339852 96340001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 96345079 96345241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 96348352 96348567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1515 nt):
ATGCTTGCTATTGCAACTTGCCTGGTGGCTAACATCTGCTCAGCAATCCATCTCTGGACTCTGCTTCTCA
CTCTTCTTACCTTGCTGCTCCTTGCTGACTACCTCAAAAACAGGCGCCCCAAGAACTATCCTCCAGGGCC
CAGGCGCCTGCCATTTGTGGGCAACTTGTTCCAGTTTGATTTAGATGTGTCACGTCTGCATTTGGGGATC
CAGCCGTTTGTGAAGAAGTATGGAAACGTAATTAGCGTGAATTTTGGTTACATTTCTTCAGTGATCATAA
GTGGACTGCCCTTAATCAAAGAAGCTATCACTGGCATGGAACAAAACTTTTTGAAACGCCCCAGTTTAGC
TGCAAGGCAACATGTATTTAAAAATAATGGCATTGTTTTTTCTAGTGGCCAGACATGGAAGGAGCAAAGA
AAGTTCGCACTGACAATACTCAAGAATTTTGGATTAGGGAAGAAGAGCTTGGAGCAGTGTATACAAGAAG
AGGCTTACCATCTTGTGAAGGCCATAGGAGAGGAGAAAGGACAGCCTTTTGACCCTCACTTCAGGATCAA
CAATGCTGTTGGCAACATCATTTGCTCCATCATCTTTGGGGAGCGCTTTGAGTATGATGACAATCAGTTT
CAGGAGCTACTGAAGTTAGCAGATGAAATCATATGTTCTGAGGCATCAATGATGTCAGTGCTCTACAATG
TCTTCCCATCCATATTTAAATATCTTCCTGGACCACAACAAAAACTGTTTAGCAACTGGGAAAAACTGAA
ATTGTTTGTTTCCCGTATGATGGACAGTCACCGGGAAGATTGGAATCCTTCTGCACCAAGAGACTTCATT
GATGCTTTCCTTACAGAAATGACAAAGTACCCAGACAAGACTACTACAAGTTTTAATGAAGAAAATCTCA
TCTGCACTGCTCTGGACCTCTTCTTTGCTGGAACAGAGACAACATCTAACACACTGCGCTGGGCTCTCCT
CTATATAACTGTTAACCCAGAAGTGCAAGAAAAAGTACACTCTGAGATTGACAGAGTGATTGGACATGGG
AGACACCCAACCTTAGATGACCAAGACTCCATGCCCTACACCAATGCTGTCATCCATGAGGTGCTGAGGA
TGGGCAACATCATCCCCTTGAATGTTCCCAGAGAAGTAACAGCTGATAGCACACTGGCTGGATTCTACCT
GCCTAAGGGCACCATGGTTCTGATCAATTTGACTGATCTGCATAGGGACCCCAAAGAGTGGGACACTCCA
AATGTCTTCAATCCAGAGCACTTTTTAGAGAATGGGCAGTTTAAGAAGAAAGAATCCTTTCTGCCTTTCT
CAATGGGAAAGAGAGCTTGCCCTGGGGAACAATTGGCCAGTTGTGAACTGTTCATTTTCTTCACTGCTCT
TATGCAAAAATTTACATTCAAGTCCCCAATCAATGAGAAGCCGAGCCTGAAGTTCAGAATGGGCCTAACA
CTTGCCCCAGTCAGCTACCGGATCTGTGCGGTCCCTAGATTGTGA

Translation (504 aa):
MLAIATCLVANICSAIHLWTLLLTLLTLLLLADYLKNRRPKNYPPGPRRLPFVGNLFQFDLDVSRLHLGI
QPFVKKYGNVISVNFGYISSVIISGLPLIKEAITGMEQNFLKRPSLAARQHVFKNNGIVFSSGQTWKEQR
KFALTILKNFGLGKKSLEQCIQEEAYHLVKAIGEEKGQPFDPHFRINNAVGNIICSIIFGERFEYDDNQF
QELLKLADEIICSEASMMSVLYNVFPSIFKYLPGPQQKLFSNWEKLKLFVSRMMDSHREDWNPSAPRDFI
DAFLTEMTKYPDKTTTSFNEENLICTALDLFFAGTETTSNTLRWALLYITVNPEVQEKVHSEIDRVIGHG
RHPTLDDQDSMPYTNAVIHEVLRMGNIIPLNVPREVTADSTLAGFYLPKGTMVLINLTDLHRDPKEWDTP
NVFNPEHFLENGQFKKKESFLPFSMGKRACPGEQLASCELFIFFTALMQKFTFKSPINEKPSLKFRMGLT
LAPVSYRICAVPRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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