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Report for CCDS36449.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36449.1 Public Mus musculus 12 Srp54a 23 108 98 CCDS HistoryNCBI Gene:24067Re-query CCDS DB by CCDS ID:36449.1Re-query CCDS DB by GeneID:24067See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36449.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021407.10 ENSMUSP00000021407.10 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021407.10Link to Ensembl Protein Viewer:ENSMUSP00000021407.10Re-query CCDS DB by Nucleotide ID:ENSMUST00000021407Re-query CCDS DB by Protein ID:ENSMUSP00000021407
Original member Current member EBI ENSMUST00000220578.1 ENSMUSP00000152764.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000220578.1Link to Ensembl Protein Viewer:ENSMUSP00000152764.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000220578Re-query CCDS DB by Protein ID:ENSMUSP00000152764
Original member NCBI NM_011899.4 NP_036029.2 Updated not alive Link to Nucleotide Sequence:NM_011899.4Link to Protein Sequence:NP_036029.2Re-query CCDS DB by Nucleotide ID:NM_011899Re-query CCDS DB by Protein ID:NP_036029
Current member NCBI NM_011899.5 NP_036029.2 Accepted alive Link to Nucleotide Sequence:NM_011899.5Link to Protein Sequence:NP_036029.2Re-query CCDS DB by Nucleotide ID:NM_011899Re-query CCDS DB by Protein ID:NP_036029Link to BLAST:NP_036029.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036029.2 504 P14576-1 504 100% 0 0

Chromosomal Locations for CCDS 36449.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 55089202 55089279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55090136 55090227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55091249 55091333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55095815 55095919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55097109 55097175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55097256 55097313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55099913 55100063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55101340 55101488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55101823 55101923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55102468 55102554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55105191 55105264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55105617 55105725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55108502 55108672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55111086 55111181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55112800 55112891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1515 nt):
ATGGTTCTAGCAGATCTTGGAAGAAAAATAACATCAGCATTACGCTCATTGAGCAATGCCACCATTATCA
ATGAAGAGGTATTAAATGCTATGCTGAAAGAAGTATGTACAGCATTATTGGAAGCAGATGTTAATATTAA
ACTAGTGAAGCAACTCAGAGAAAATGTTAAGTCTGCAATTGATCTTGAAGAGATGGCATCTGGACTGAAC
AAAAGAAAAATGATTCAGCATGCTGTATTTAAAGAACTTGTAAAGCTTGTAGACCCTGGAGTTAAAGCGT
GGACACCGACTAAGGGAAAGCAAAATGTGATCATGTTTGTTGGATTGCAAGGGAGTGGTAAAACGACAAC
ATGTTCAAAGTTAGCATATTATTACCAGAGGAAAGGTTGGAAGACCTGTTTGATATGTGCAGATACATTC
AGAGCAGGAGCCTTTGACCAGCTAAAACAGAATGCCACCAAAGCAAGAATTCCGTTCTATGGCAGCTATA
CTGAAATGGATCCTGTCATCATTGCTTCTGAAGGAGTGGAGAAATTCAAAAATGAAAATTTTGAAATTAT
TATTGTTGATACAAGTGGTCGTCACAAACAAGAAGACTCTTTATTTGAAGAAATGCTTCAAGTTTCTAAT
GCTATACAACCTGATAACATTGTTTATGTGATGGATGCATCCATCGGACAGGCTTGTGAGGCCCAGGCGA
AGGCCTTTAAAGACAAAGTAGATGTAGCTTCAGTAATAGTGACAAAACTCGACGGTCATGCGAAAGGAGG
CGGTGCTCTTAGTGCAGTTGCTGCCACAAAAAGTCCAATTATTTTCATTGGTACAGGGGAACATATAGAT
GATTTTGAACCTTTCAAAACACAACCTTTCATCAGCAAACTCCTTGGAATGGGTGATATTGAAGGACTGA
TTGATAAAGTCAATGAATTGAAGTTGGATGATAATGAGGCACTTATAGAGAAGTTGAAGCACGGTCAGTT
TACATTGCGAGACATGTATGAACAGTTTCAGAATATTATGAAAATGGGCCCATTCAGTCAGATATTGGGG
ATGATTCCTGGCTTTGGCACAGATTTTATGAGCAAAGGGAATGAGCAGGAGTCAATGGCAAGGCTGAAGA
AACTGATGACAATCATGGACAGTATGAACGATCAAGAACTGGACAGTACAGATGGTGCCAAGGTTTTCAG
TAAGCAACCAGGGAGAATCCAAAGAGTTGCCCGGGGATCAGGTGTGTCAACAAGAGATGTTCAAGAACTT
CTGACCCAGTATACCAAGTTTGCACAGATGGTCAAAAAGATGGGAGGTATCAAAGGACTTTTCAAAGGCG
GTGATATGTCTAAGAATGTGAGTCAGTCACAGATGGCAAAATTAAACCAACAAATGGCCAAAATGATGGA
CCCACGAGTTCTTCATCACATGGGTGGCATGGCCGGCCTTCAGTCAATGATGCGGCAGTTTCAGCAGGGT
GCTGCTGGCAACATGAAAGGCATGATGGGATTCAATAACATGTAA

Translation (504 aa):
MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLN
KRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTF
RAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVSN
AIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHID
DFEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILG
MIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQEL
LTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGLQSMMRQFQQG
AAGNMKGMMGFNNM


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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