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Report for CCDS27814.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27814.1 Public Mus musculus 15 C1ql4 23 108 98 CCDS HistoryNCBI Gene:239659Re-query CCDS DB by CCDS ID:27814.1Re-query CCDS DB by GeneID:239659See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 27814.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064462.4 ENSMUSP00000068402.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064462.4Link to Ensembl Protein Viewer:ENSMUSP00000068402.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000064462Re-query CCDS DB by Protein ID:ENSMUSP00000068402
Original member Current member NCBI NM_001024702.1 NP_001019873.1 Accepted alive Link to Nucleotide Sequence:NM_001024702.1Link to Protein Sequence:NP_001019873.1Re-query CCDS DB by Nucleotide ID:NM_001024702Re-query CCDS DB by Protein ID:NP_001019873Link to BLAST:NP_001019873.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001019873.1 238 Q4ZJM9 238 100% 0 0

Chromosomal Locations for CCDS 27814.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 99084754 99084933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99087192 99087728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (717 nt):
ATGGTGCTGCTGCTGCTGGTAGCCATCCCGCTACTGGTGCACAGCTCTCGCGGACCAACACACTATGAGA
TGCTAGGTCGCTGTCGCATGGTGTGTGACCCCCACGCATCCCGAGGCCAAGGCCCCGACGGCGCGCCCGC
CTCGGTGCCTTCCTTACCTCCAGGTGCCAAGGGAGAGGTGGGGCGGCGAGGGAAGGCAGGCCTGCGGGGG
CCACCAGGACCCCCAGGTCCCAGAGGGCCCCCTGGAGAGCCAGGCAGGCCAGGACCCCCAGGTCCTCCTG
GCCCAGGCCCTGGAGGGGCAGCGCCCCCTGCCGGCTATGTACCCCGAATTGCCTTCTACGCGGGTCTAAG
GCGGCCTCACGAGGGTTATGAAGTGTTGCGCTTTGACGACGTGGTGACCAACGTGGGCAACGCTTACGAG
GCAGCCAGCGGCAAGTTCACCTGCCCCATGCCAGGAGTCTATTTCTTCGCTTACCATGTGCTCATGCGAG
GCGGTGACGGTACCAGCATGTGGGCCGATCTGATGAAGAACGGACAGGTCCGGGCCAGCGCCATTGCTCA
GGATGCGGATCAGAACTACGACTATGCCAGCAACAGCGTCATTCTGCACCTAGACGTGGGTGACGAGGTC
TTCATCAAGCTGGACGGTGGGAAGGTGCACGGCGGGAACACCAATAAGTACAGCACCTTCTCAGGATTCA
TCATCTACCCGGACTGA

Translation (238 aa):
MVLLLLVAIPLLVHSSRGPTHYEMLGRCRMVCDPHASRGQGPDGAPASVPSLPPGAKGEVGRRGKAGLRG
PPGPPGPRGPPGEPGRPGPPGPPGPGPGGAAPPAGYVPRIAFYAGLRRPHEGYEVLRFDDVVTNVGNAYE
AASGKFTCPMPGVYFFAYHVLMRGGDGTSMWADLMKNGQVRASAIAQDADQNYDYASNSVILHLDVGDEV
FIKLDGGKVHGGNTNKYSTFSGFIIYPD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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