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Report for CCDS26098.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26098.1 Public Mus musculus 12 Ptpn21 23 108 98 CCDS HistoryNCBI Gene:24000Re-query CCDS DB by CCDS ID:26098.1Re-query CCDS DB by GeneID:24000See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26098.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000085116.3 ENSMUSP00000082197.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085116.3Link to Ensembl Protein Viewer:ENSMUSP00000082197.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000085116Re-query CCDS DB by Protein ID:ENSMUSP00000082197
Original member Current member EBI ENSMUST00000170188.7 ENSMUSP00000126975.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170188.7Link to Ensembl Protein Viewer:ENSMUSP00000126975.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170188Re-query CCDS DB by Protein ID:ENSMUSP00000126975
Original member Current member NCBI NM_001146199.1 NP_001139671.1 Accepted alive Link to Nucleotide Sequence:NM_001146199.1Link to Protein Sequence:NP_001139671.1Re-query CCDS DB by Nucleotide ID:NM_001146199Re-query CCDS DB by Protein ID:NP_001139671Link to BLAST:NP_001139671.1
Original member Current member NCBI NM_011877.2 NP_036007.2 Accepted alive Link to Nucleotide Sequence:NM_011877.2Link to Protein Sequence:NP_036007.2Re-query CCDS DB by Nucleotide ID:NM_011877Re-query CCDS DB by Protein ID:NP_036007Link to BLAST:NP_036007.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139671.1 1176 Q62136 1176 99.6599% 0 4
NP_036007.2 1176 Q62136 1176 99.6599% 0 4

Chromosomal Locations for CCDS 26098.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 98678550 98678678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98679276 98679436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98679957 98680191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98680361 98680489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98682519 98682740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98683478 98683615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98688190 98689628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98692872 98692956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98693557 98693617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98698831 98698910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98699959 98700046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98704142 98704230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98705093 98705180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98708805 98708875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98709536 98709603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98710800 98710897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98715024 98715193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98733474 98733653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3531 nt):
ATGCCACTGCCATTTGGATTGAAATTGAAACGCACCCGACGCTACACTGTGTCCAGCAAGAGCTGCCTGG
TTGCCCGGATCCAGCTGCTCAATAATGAGTTTGTGGAGTTCACTCTGTCTGTGGAGAGCACTGGCCAGGA
GAGCCTAGAAGCTGTGGCCCAGCGCCTGGAGCTGAGAGAGGTCACTTACTTTAGCCTCTGGTACTACAAC
AAGCAGAATCAGCGGCGCTGGGTGGATTTGGAGAAACCCCTGAAGAAGCAGCTGGACAAGCACGCACTGG
AGCCTACCGTCTACTTCGGCGTGCTATTCTATGTGCCTTCTGTTTCCCAGCTGCAGCAGGAGATTACCAG
GTATCAGTATTACCTGCAGCTGAAGAAAGATATTCTGGAAGGAAACCTTCCCTGTACATTAGAACACGCC
ATTCAGCTGGCCGGCTTAGCTGTTCAAGCTGATTTTGGTGACTTTGATCAGTATGAATCCCAAGATTTTC
TTCAGAAATTTGCCTTGCTCCCCGTGGCATGGCTACAGGATGAAAAAGTGCTGGAAGAAGCAGCCCAGAA
AGTGGCCTTACTGCACCAGAAATACAGAGGGCTCACAGCTCCTGAGGCCGAGCTGCTGTACATGCAGGAG
GTAGAGAGAATGGATGGCTACGGAGAGGAGAGCTACCCTGCCAAGGACAGCCAAGGAAGTGACATATCCA
TTGGTGCCTGTCTCGATGGCATCTTTGTGAAACACAAGAACGGAAGGCCTCCTGTGGTGTTCAGGTGGCA
CGACATTGCTAACATGTCGCATAACAAGTCCTTTTTTGCACTAGAGCTGGCAAATAAAGAGGAGACCATC
CAGTTTCAAACTGAAGACATGGAGACAGCCAAGTACGTGTGGCGGCTGTGTGTGGCACGGCACAAATTCT
ACAGACTGAACCAGTGTAGCCTGCAAACGCAGGCCGCCACGCTGAACTCAGTCAGGAGGGGCTCATCCTC
CAGGATGTCTCTGCCTAAACCCCAGCCCTATGCGATGCCTCCCCCACCCCAGCTGCATTATAATGGACAT
TATACAGAGCCATTTGCTTCTTCCCAAGACAACATCTTTGTGCCCAACAAGAATGGATTCTACTGTCACT
CCCAGACAAGCCTGGATAGAACCCAGATTGACCTCAGTGGTCGCATCCGCAACGGCAGCGTCTACAGTGC
ACACAGTACGAATTCCTTAAACACACTTCAGCCCTACCTGCAGCCCTCCCCCATGTCCTCCAACCCGAGT
ATCACTGGCAGTGATGTCATGAGACCCGACTACATCCCGTCCCACCGGCACAGTGCGCTCATTCCCCCGT
CTTACCGCCCGACCCCTGACTACGAGACCGTGATGAAGCAGCTCAACAGAGGCATGGTGCACGCAGACCG
GCACAGCCACTCGCTGAGGAACCTCAACATTGGCAGTTCCTATGCGTACAGCCGGCCCGACGCCTTGGTC
TACAGCCAGCCCGAGATTCGGGAGCACCCTCACCTCACCTCTCCCCAGTCAGCCCACTACCCCTTTAACC
TGAACTACAGTTTCCACAGCCAGTCTCCGTATCCCTACCCTGCCGAGAGGCGGCCAGTGGTGGGCGCCGT
GAGTGTGCCTGAACTGACAAATGTGCAGCTGCAGGCTCAGGACTACCCAGCTCCAAACATTATGAGAACC
CAGGTGTACCGCCCACCCCCGCCGTATCCTTACCCAAGACCTGCCAACAGCACCCCAGACCTGTCCCGCC
ACCTCTACATCAGCAGCAGCAATCCGGATCTCATCACCAGGCGCGTCCATCACTCAGTGCAGACCTTCCA
GGAGGACAGCTTGCCCGTGGCTCACTCTCTGCAGGAGGTCAGCGAGCCCCTCACAGCAGCGCGCCATGCC
CACCTACAGAAGAGGAACAGTATTGAAATCGCAGGGCTCACACATGGATTCGAAGGCCTGAGGCTCAAGG
AGAGGACGGTGTCAGCCTCAGCAGCAGACGTGGCGCCCCGGACCTTCTCAGCAGGCTCCCAGTCCAGCGT
CTTCTCTGACAAAATGAAGCAGGAGGGGACTGAAGAGCAGGAGGGTGGCAGATACAGCCATAAGAAGTCC
CTTTCTGATGCCACCATGCTGATTCATAGCAGTGAGGAGGACGAGGACTTGGAAGAGGACAGCAGCAGAG
AACAGGCCATCTCAGCTGTGTCTGAGCCCCGCCTTACGGCCGCTTTCTCTCAGGAACTAAACTACCCCTG
TGCTTCAGCGACTCCGATCACTGGGCCTCTGCATATTTTTGAGCCCAAGCCCCATGTCACAGAGCCTGAG
AAGAGGGCAAAGGACATCAGCCCTGTCCACCTGGTTGTGGAGACCCATCGGCCCCGAAGAGATGGACTGC
TGACCCCCTCCATGTCCGAGTCAGACCTCACGACCTCAGGGAGGTACCGAGCTAGGAGGGACTCTGTCAA
GAAAAGGCCAGTGTCAGACCTCCTCTCTGGGAAAAAAAGCGCTGTGGAAGGACTTCCGCCACTAGGGGGG
ATGAAAAAAACTCGAGCAGATGCAAAAAAAATTGGTCCCCTCAAGCTGGCAGCCCTCAATGGGCTCTCCC
TGTCCCGGCTGCCCCTGCCTGATGAAGGAAAAGAAGTGTCCACCAGAGCGACAAATGACGAGAGGTGCAA
GGTTCTGGAGCAGCGGTTAGAGCAAGGCATGGTCTTCACCGAATATGAGAGGATCCTTAAGAAGCGGCTG
GTTGATGGTGAGTGCTCGACTGCCCGGCTCCCTGAAAATGCAGAGAGAAATCGATTTCAAGATGTGCTCC
CCTACGATGATGCGAGAGTCGAGTTGGTGCCAACCAAGGAGAACAACACTGGCTACATCAACGCGTCACA
CATTAAGGTCTCTGTCAGCGGAATAGAATGGGATTATATTGCCACACAGGGACCATTACAAAATACCTGC
CAGGACTTTTGGCAGATGGTGTGGGAACAGGGAGTCGCAATTATAGCAATGGTGACAGCAGAAGAGGAGG
GAGGCCGGGAGAAGAGCTTTAGGTACTGGCCACGGCTTGGTTCCAGGCACAACACTGTCACCTATGGAAG
GTTTAAGATCACAACGCGCTTCCGCACGGACTCGGGCTGCTATGCCACCACAGGTTTGAAGATGAAGCAC
CTTCTCACAGGGCAGGAGAGAACCGTTTGGCATCTTCAGTACACAGACTGGCCTGAACACGGCTGTCCCG
AAGACCTCAAAGGATTTTTATCCTACCTTGAAGAGATCCAGTCAGTTCGACGTCATACAAACAGTACCAG
TGAACCCAAAAGCCACAATCCCCCGCTGCTGGTGCACTGCAGTGCTGGCGTGGGAAGAACTGGGGTCGTC
ATTCTGTCAGAGATCATGGTTGCCTGTCTGGAACACAATGAGGTGCTGGACATCCCCAGAGTGCTGGACA
TGCTGAGGCAGCAGAGGATGATGCTGGTGCAGACACTTGGCCAGTACACCTTTGTGTACAGAGTGCTCAT
TCAGTTCCTGAAAAGCTCCAGGCTCATTTAA

Translation (1176 aa):
MPLPFGLKLKRTRRYTVSSKSCLVARIQLLNNEFVEFTLSVESTGQESLEAVAQRLELREVTYFSLWYYN
KQNQRRWVDLEKPLKKQLDKHALEPTVYFGVLFYVPSVSQLQQEITRYQYYLQLKKDILEGNLPCTLEHA
IQLAGLAVQADFGDFDQYESQDFLQKFALLPVAWLQDEKVLEEAAQKVALLHQKYRGLTAPEAELLYMQE
VERMDGYGEESYPAKDSQGSDISIGACLDGIFVKHKNGRPPVVFRWHDIANMSHNKSFFALELANKEETI
QFQTEDMETAKYVWRLCVARHKFYRLNQCSLQTQAATLNSVRRGSSSRMSLPKPQPYAMPPPPQLHYNGH
YTEPFASSQDNIFVPNKNGFYCHSQTSLDRTQIDLSGRIRNGSVYSAHSTNSLNTLQPYLQPSPMSSNPS
ITGSDVMRPDYIPSHRHSALIPPSYRPTPDYETVMKQLNRGMVHADRHSHSLRNLNIGSSYAYSRPDALV
YSQPEIREHPHLTSPQSAHYPFNLNYSFHSQSPYPYPAERRPVVGAVSVPELTNVQLQAQDYPAPNIMRT
QVYRPPPPYPYPRPANSTPDLSRHLYISSSNPDLITRRVHHSVQTFQEDSLPVAHSLQEVSEPLTAARHA
HLQKRNSIEIAGLTHGFEGLRLKERTVSASAADVAPRTFSAGSQSSVFSDKMKQEGTEEQEGGRYSHKKS
LSDATMLIHSSEEDEDLEEDSSREQAISAVSEPRLTAAFSQELNYPCASATPITGPLHIFEPKPHVTEPE
KRAKDISPVHLVVETHRPRRDGLLTPSMSESDLTTSGRYRARRDSVKKRPVSDLLSGKKSAVEGLPPLGG
MKKTRADAKKIGPLKLAALNGLSLSRLPLPDEGKEVSTRATNDERCKVLEQRLEQGMVFTEYERILKKRL
VDGECSTARLPENAERNRFQDVLPYDDARVELVPTKENNTGYINASHIKVSVSGIEWDYIATQGPLQNTC
QDFWQMVWEQGVAIIAMVTAEEEGGREKSFRYWPRLGSRHNTVTYGRFKITTRFRTDSGCYATTGLKMKH
LLTGQERTVWHLQYTDWPEHGCPEDLKGFLSYLEEIQSVRRHTNSTSEPKSHNPPLLVHCSAGVGRTGVV
ILSEIMVACLEHNEVLDIPRVLDMLRQQRMMLVQTLGQYTFVYRVLIQFLKSSRLI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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