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Report for CCDS25079.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25079.1 Public Mus musculus 11 Coro6 23 108 98 CCDS HistoryNCBI Gene:216961Re-query CCDS DB by CCDS ID:25079.1Re-query CCDS DB by GeneID:216961See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25079.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102493.7 ENSMUSP00000099551.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102493.7Link to Ensembl Protein Viewer:ENSMUSP00000099551.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102493Re-query CCDS DB by Protein ID:ENSMUSP00000099551
Original member Current member EBI ENSMUST00000108391.8 ENSMUSP00000104028.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108391.8Link to Ensembl Protein Viewer:ENSMUSP00000104028.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108391Re-query CCDS DB by Protein ID:ENSMUSP00000104028
Original member Current member NCBI NM_139130.3 NP_624356.1 Accepted alive Link to Nucleotide Sequence:NM_139130.3Link to Protein Sequence:NP_624356.1Re-query CCDS DB by Nucleotide ID:NM_139130Re-query CCDS DB by Protein ID:NP_624356Link to BLAST:NP_624356.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_624356.1 471 Q920M5-2 471 100% 0 0

Chromosomal Locations for CCDS 25079.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 77463913 77464110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77465666 77465788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77466195 77466324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77466418 77466599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77467750 77467869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77468266 77468370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77468461 77468606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77468910 77468967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77469057 77469287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77469379 77469501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1416 nt):
ATGAGCCGGCGTGTTGTTCGGCAGAGCAAGTTCCGCCACGTGTTTGGTCAGGCAGCAAAGGCTGACCAGG
CCTATGAGGACATCCGGGTATCCAAGGTCACATGGGACAGCGCCTTCTGTGCCGTCAACCCCAAATTTCT
AGCCATTATTGTGGAGGCTGGAGGTGGAGGTGCCTTCATTGTCCTGCCTCTGGCCAAGACAGGACGAGTG
GATAAGAACTACCCACTGGTCACTGGGCACACTGGCCCTGTGCTGGACATTGACTGGTGCCCACACAATG
ACAACGTCATCGCCAGTGCCTCAGATGACACCACAGTCATGGTGTGGCAGATTCCAGACTACACCCCTGT
AAGAAACATCACAGAACCTGTCATCACACTCGAGGGCCACTCCAAGCGTGTGGGCATCCTGTCTTGGCAT
CCTACTGCCAGGAATGTCCTGCTCAGTGCAGGGGGTGATAATGTGATCATCATCTGGAATGTGGGCACTG
GGGAGGTACTGCTGAGCCTGGACGACATACACCCTGACGTCATCCACAGCGTGTGTTGGAACAGCAATGG
TAGCCTGCTAGCCACCACCTGCAAGGACAAGACCTTGCGCATCATTGACCCCCGGAAGAGTCAAGTGGTT
GCGGAGAGGTTTGCAGCCCACGAGGGGATGAGACCCATGCGGGCTGTCTTCACGCGGCTGGGTCATATCT
TCACCACGGGATTCACCCGCATGAGCCAGCGAGAGCTAGGCCTGTGGGACCCGAACAATTTCGAAGAGCC
AGTGGCCCTGCAGGAGATGGACACAAGCAACGGAGTGTTACTACCATTCTACGATCCTGACTCCAGCATC
GTCTACTTGTGTGGCAAGGGTGACAGTAGCATTCGGTACTTTGAAATTACGGAAGAACCACCTTTCGTGC
ATTATCTGAACACATTTAGCAGCAAAGAACCGCAACGGGGTATGGGTTTCATGCCCAAGCGGGGACTGGA
TGTCAGCAAATGTGAAATCGCCAGGTTCTACAAGCTGCACGAACGAAAGTGTGAACCCATCATCATGACT
GTACCGCGAAAGTCAGACCTGTTCCAGGATGACCTATACCCAGACACGCCTGGCCCTGAGCCTGCCCTGG
AAGCTGATGAGTGGCTATCAGGTCAGGATGCAGAACCTGTGCTCATTTCGCTGAAGGAAGGCTACGTTCC
CCCCAAACACCGTGAGCTTCGGGTCACCAAACGCAACATCCTAGATGTGCGCCCGCCGGCCAGTCCTCGG
CGCAGCCAGTCCGCCAGCGAGGCCCCCTTGTCGCAGCACACCCTGGAGACATTGCTGGAGGAGATAAAGG
CCCTCCGAGATCGAGTGCAGGCCCAAGAGGAGCGCATCACTGCGTTGGAAAACATGCTCTGTGAGCTGGT
GGACGGCACAGACTAG

Translation (471 aa):
MSRRVVRQSKFRHVFGQAAKADQAYEDIRVSKVTWDSAFCAVNPKFLAIIVEAGGGGAFIVLPLAKTGRV
DKNYPLVTGHTGPVLDIDWCPHNDNVIASASDDTTVMVWQIPDYTPVRNITEPVITLEGHSKRVGILSWH
PTARNVLLSAGGDNVIIIWNVGTGEVLLSLDDIHPDVIHSVCWNSNGSLLATTCKDKTLRIIDPRKSQVV
AERFAAHEGMRPMRAVFTRLGHIFTTGFTRMSQRELGLWDPNNFEEPVALQEMDTSNGVLLPFYDPDSSI
VYLCGKGDSSIRYFEITEEPPFVHYLNTFSSKEPQRGMGFMPKRGLDVSKCEIARFYKLHERKCEPIIMT
VPRKSDLFQDDLYPDTPGPEPALEADEWLSGQDAEPVLISLKEGYVPPKHRELRVTKRNILDVRPPASPR
RSQSASEAPLSQHTLETLLEEIKALRDRVQAQEERITALENMLCELVDGTD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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