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Report for CCDS17889.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17889.1 Public Mus musculus 3 Clca1 23 108 98 CCDS HistoryNCBI Gene:23844Re-query CCDS DB by CCDS ID:17889.1Re-query CCDS DB by GeneID:23844See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17889.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029919.6 ENSMUSP00000029919.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029919.6Link to Ensembl Protein Viewer:ENSMUSP00000029919.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000029919Re-query CCDS DB by Protein ID:ENSMUSP00000029919
Original member Current member NCBI NM_017474.2 NP_059502.1 Accepted alive Link to Nucleotide Sequence:NM_017474.2Link to Protein Sequence:NP_059502.1Re-query CCDS DB by Nucleotide ID:NM_017474Re-query CCDS DB by Protein ID:NP_059502Link to BLAST:NP_059502.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_059502.1 913 Q9D7Z6 913 100% 0 0

Chromosomal Locations for CCDS 17889.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 145004699 145005087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 145005880 145006116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 145007753 145007923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 145008910 145009171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 145009692 145009907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 145011739 145011845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 145013848 145014022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 145015624 145015851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 145016653 145016871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 145018560 145018740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 145024526 145024631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 145027295 145027442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 145027871 145028011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 145032584 145032745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2742 nt):
ATGGAATCTTTGAAGAGTCCTGTCTTCCTCTTGATCCTCCACCTTCTGGAAGGAGTTCTGAGTGAGTCCC
TCATCCAACTGAACAACAACGGCTATGAGGGCATCGTCATCGCCATAGACCACGACGTGCCGGAAGATGA
AGCCCTCATTCAACACATAAAGGACATGGTGACTCAGGCCTCTCCATACCTGTTTGAAGCTACAGGAAAA
AGATTTTACTTCAAAAATGTTGCCATTTTGATTCCCGAGAGCTGGAAGGCAAAGCCTGAATATACGAGGC
CAAAACTTGAAACCTTCAAAAACGCTGATGTCCTTGTATCAACAACCAGCCCTCTAGGCAATGATGAGCC
CTACACCGAACATATAGGAGCATGTGGAGAAAAGGGGATCAGGATTCACCTGACTCCTGACTTCTTAGCA
GGAAAGAAGCTGACTCAGTATGGGCCACAAGACAGGACCTTTGTCCATGAGTGGGCTCACTTCCGATGGG
GAGTGTTTAATGAATACAACAACGACGAGAAGTTCTACTTATCCAAAGGAAAACCCCAAGCAGTGAGGTG
TTCAGCAGCCATTACCGGTAAAAATCAAGTTCGTCGGTGCCAGGGAGGCAGTTGTATCACTAACGGAAAG
TGTGTAATCGACAGAGTAACGGGACTGTATAAAGACAATTGTGTATTTGTACCAGATCCACACCAAAACG
AGAAGGCTTCCATCATGTTTAACCAAAATATCAATTCTGTGGTTGAATTCTGTACAGAAAAAAATCACAA
TCAAGAAGCCCCAAATGACCAAAACCAACGATGCAATCTCCGAAGCACGTGGGAAGTCATCCAGGAATCT
GAGGACTTCAAGCAAACCACTCCCATGACAGCCCAGCCACCTGCACCCACCTTCTCACTGCTGCAAATTG
GACAAAGAATTGTGTGCTTAGTTCTTGATAAGTCCGGGAGCATGCTGAACGATGATCGTCTTAACCGAAT
GAATCAGGCAAGCCGGCTTTTCCTGCTGCAGACTGTGGAGCAGGGATCCTGGGTCGGGATGGTGACCTTT
GACAGTGCTGCCTATGTACAAAGCGAACTCAAACAGTTAAACAGTGGTGCTGACAGAGATCTGCTGATCA
AGCACTTACCCACAGTATCTGCAGGAGGGACATCTATATGCTCTGGCCTTCGGACAGCATTTACAGTGAT
AAAGAAGAAGTATCCAACTGATGGATCTGAAATTGTGCTGCTGACCGATGGGGAGGACAACACCATTAGC
AGCTGCTTTGACCTGGTGAAGCAGAGCGGGGCCATCATCCATACAGTGGCCCTGGGACCGGCTGCCGCTA
AAGAGCTTGAGCAGCTGTCCAAAATGACAGGAGGCCTGCAGACATACTCTTCGGATCAGGTTCAGAACAA
TGGTCTTGTTGATGCTTTCGCAGCACTCTCCTCAGGAAATGCGGCGATCGCTCAGCACTCCATCCAGCTG
GAGAGCAGGGGAGTTAATCTCCAGAATAACCAATGGATGAATGGCTCAGTGATCGTGGACAGCTCGGTGG
GCAAGGACACCTTGTTTCTTATCACCTGGACAACGCATCCTCCTACAATATTTATCTGGGATCCCAGCGG
AGTGGAACAAAATGGTTTTATACTAGACACAACCACTAAGGTGGCCTACCTCCAAGTCCCAGGCACGGCT
AAGGTTGGCTTTTGGAAATACAGCATTCAAGCGAGCTCACAGACTCTCACCTTGACTGTCACCTCCCGTG
CAGCAAGTGCTACACTGCCTCCTATTACAGTGACCCCGGTAGTGAATAAGAACACAGGGAAATTCCCCAG
CCCTGTAACAGTGTATGCAAGCATTCGCCAAGGAGCCTCGCCTATTCTCAGGGCCAGCGTCACAGCCTTG
ATTGAATCTGTGAATGGAAAAACAGTAACCCTGGAATTACTGGATAACGGAGCAGGTGCCGATGCCACCA
AGAATGATGGTGTCTACTCAAGGTTTTTTACAGCTTTTGATGCAAATGGTAGATACAGCGTTAAAATATG
GGCTCTGGGAGGAGTCACTTCAGACAGACAGAGAGCAGCACCTCCGAAGAACAGAGCCATGTACATAGAT
GGCTGGATTGAGGATGGTGAAGTAAGAATGAACCCACCACGTCCTGAAACTAGTTATGTTCAAGACAAGC
AGCTGTGCTTCAGCAGGACATCTTCAGGGGGATCGTTTGTGGCCACCAATGTCCCCGCAGCAGCTCCCAT
TCCTGACCTCTTTCCACCCTGTCAAATCACTGACCTGAAGGCCAGCATCCAAGGGCAGAACCTGGTGAAT
CTGACGTGGACGGCTCCTGGGGATGACTACGACCACGGGAGAGCTTCCAACTACATCATCCGAATGAGCA
CCAGTATCGTTGATCTCAGGGACCACTTCAACACCTCACTCCAAGTGAACACTACCGGTCTTATCCCCAA
AGAGGCCAGCTCTGAGGAAATCTTTGAGTTTGAACTGGGAGGCAACACTTTTGGAAATGGCACAGATATC
TTCATTGCTATCCAGGCTGTGGATAAGTCCAATCTGAAATCAGAAATCTCCAACATTGCACGGGTGTCTG
TGTTCATCCCCGCTCAGGAGCCGCCCATTCCCGAAGACTCAACTCCCCCTTGTCCTGACATCAGCATCAA
CAGCACCATTCCTGGCATCCACGTGCTGAAGATAATGTGGAAGTGGCTAGGGGAAATGCAGGTGACACTA
GGTTTGCACTGA

Translation (913 aa):
MESLKSPVFLLILHLLEGVLSESLIQLNNNGYEGIVIAIDHDVPEDEALIQHIKDMVTQASPYLFEATGK
RFYFKNVAILIPESWKAKPEYTRPKLETFKNADVLVSTTSPLGNDEPYTEHIGACGEKGIRIHLTPDFLA
GKKLTQYGPQDRTFVHEWAHFRWGVFNEYNNDEKFYLSKGKPQAVRCSAAITGKNQVRRCQGGSCITNGK
CVIDRVTGLYKDNCVFVPDPHQNEKASIMFNQNINSVVEFCTEKNHNQEAPNDQNQRCNLRSTWEVIQES
EDFKQTTPMTAQPPAPTFSLLQIGQRIVCLVLDKSGSMLNDDRLNRMNQASRLFLLQTVEQGSWVGMVTF
DSAAYVQSELKQLNSGADRDLLIKHLPTVSAGGTSICSGLRTAFTVIKKKYPTDGSEIVLLTDGEDNTIS
SCFDLVKQSGAIIHTVALGPAAAKELEQLSKMTGGLQTYSSDQVQNNGLVDAFAALSSGNAAIAQHSIQL
ESRGVNLQNNQWMNGSVIVDSSVGKDTLFLITWTTHPPTIFIWDPSGVEQNGFILDTTTKVAYLQVPGTA
KVGFWKYSIQASSQTLTLTVTSRAASATLPPITVTPVVNKNTGKFPSPVTVYASIRQGASPILRASVTAL
IESVNGKTVTLELLDNGAGADATKNDGVYSRFFTAFDANGRYSVKIWALGGVTSDRQRAAPPKNRAMYID
GWIEDGEVRMNPPRPETSYVQDKQLCFSRTSSGGSFVATNVPAAAPIPDLFPPCQITDLKASIQGQNLVN
LTWTAPGDDYDHGRASNYIIRMSTSIVDLRDHFNTSLQVNTTGLIPKEASSEEIFEFELGGNTFGNGTDI
FIAIQAVDKSNLKSEISNIARVSVFIPAQEPPIPEDSTPPCPDISINSTIPGIHVLKIMWKWLGEMQVTL
GLH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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