Absence of CRTAM expression results in impaired antimicrobial peptide production. WT and Crtam−/− mice were infected orally with 10 cysts of T. gondii strain ME49. (A) Expression of S100a8, S100a9, Defb3, Reg3g, Defa1, and Defa2 mRNA in the ilea of infected mice at days 0, 5, and 8 determined by quantitative PCR. 16S rRNA sequencing of ileal lumen contents at day 0 or 8 days post-infection (D8). Data are mean bacterial changes at the (B) phyla or (C) order level, and (D) principal coordinates analysis on weighted UniFrac distances (n = 4). Bacterial counts present in the (E) mesenteric lymph node and (F) spleen at day 8 post-infection. Bars represent means, error bars represent SEM. Data are representative of two independent experiments (n = 4–8). Statistical analysis was performed using Student's t-test (*p < 0.05; **p < 0.01; ***p < 0.001).