PMC

The X-axis shows the range of lengths of the transcript sequences. The Y-axis shows the number of unigenes.

The number of genes annotated is listed in each diagram component.

Annotated unique sequences were classified into ‘Biological process’, ‘Cellular component’ and ‘Molecular function’ respectively.

A: Cellular Processes; B: Environmental Information Processing; C: Genetic Information Processing; D: Human Diseases; E: Metabolism and F: Organismal Systems.

Relative expression values, normalized to actin, were shown as 2^−ΔΔCt relative to mean of the L, M and H treatments. Error bars represent the SD of three biological replicas with three technical replicas each.

The data are expressed as the mean±SD. Different letters (a, b and c) indicate significant differences among groups with different light intensity treatments (p≤0.05; n = 30).

Relative expression values, normalized to actin, were shown as 2^−ΔΔCt relative to mean of the five light treatments. Error bars represent the SD of three biological replicas with three technical replicas each.

The horizontal axis represents the log2(Fold Change) between the two samples indicated on the top or on the right of the figure, while the vertical axis represents the log10(p value) for the differential expressions between the two samples. Each point represent a gene, red points indicate p value ≤ 0.05, while blue points indicate that p value > 0.05.

Red, green and black colors in the heat-map represent relative gene expression levels. The scale bar denotes the log (FPKM+1)/(mean expression levels across the three treatment groups). The green color indicates down-regulated expression compared with the mean expression levels, and the red color indicates up-regulated expression compared to the mean. Three clusters (I, II and III) were indicated with brackets.