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Figure 2

Figure 2. From: Automatic analysis (aa): efficient neuroimaging workflows and parallel processing using Matlab and XML.

Example file structure for aa output. Each analysis comprises output directories organized by processing stage (here, for example, realignment and smoothing) which are then each subdivided by subject, then session.

Rhodri Cusack, et al. Front Neuroinform. 2014;8:90.

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2.
Figure 1

Figure 1. From: Automatic analysis (aa): efficient neuroimaging workflows and parallel processing using Matlab and XML.

A typical fMRI pipeline comprising a set of aa modules (filenames prefixed with aamod_). Blue colors refer to modules processing the structural, green colors processing the EPI, and red are general. This pipeline does preprocessing and first-level (individual) and second-level (group) statistics.

Rhodri Cusack, et al. Front Neuroinform. 2014;8:90.

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