PMC

Median-joining phylogenetic trees of Noir Marron, African and African American Y-chromosome STR haplotypes belonging to haplogroups E1b1a*.

Median-joining phylogenetic trees of Noir Marron, African and African American mitochondrial HVS-I haplotypes belonging to haplogroups L1c* and L2a*.

Geographic location of the Noir Marron communities sampled. The brown hatched areas locate the Noir Marron communities in Surinam and in French Guiana. The brown points represent the communities sampled and their relative size depends to the number of sampled individuals.

Geographic locations of populations analysed in the study. Each number refers to a unique group characterised by its ethnic name, country, the genetic system studied and the author of the corresponding study. The nomenclature and the references are available in Additional file .

Map of Fst values obtained for the pairwise comparison of the Noir Marron maternal lineages with those of Africans, African Americans and urban Americans. The red colour scale represents the Fst values calculated between the mtDNA data of the Noir Marron and the populations of interest represented by black crosses.

Map of Fst values obtained for the pairwise comparison of the Noir Marron paternal lineages with those of Africans, African Americans and urban Americans. The green colour scale represents the Fst values calculated between the NRY data of the Noir Marron and the populations of interest, which are represented by black crosses.

Plot showing the 1^st and 2^nd principal component of the FCA computed from the NRY haplogroup frequencies of the Noir Marron and African populations. Square point represents the Noir Marron population, circle points the West African and South West African populations, and all other groups are represented by triangular points. The colours identify the groups considered in the present study.

Plot showing the 1^st and 2^nd principal component of the FCA computed from the mtDNA haplogroup frequencies of the Noir Marron and African populations. Square point represents the Noir Marron population, circle points the West African and South West African populations, and all other groups are represented by triangular points. The colours identify the groups considered in the present study.

Env phylogenetic tree generated using the Neighbor-Joining method performed in the PAUP program (v4.0b10) on a 519-bp fragment of the Env gene using 75 HTLV-1 available sequences available in Genbank. The new Noir Marron data are coded in red. The Noir Marron data already published are coded "NM". The Mel5 and VAN136 strains were used as out-group. The HTLV-1 strains were aligned with the DAMBE program (version 4.2.13). The final alignment was submitted to the Modeltest program (version 3.6) to select, according to the Akaike Information Criterion (AIC), the best model to apply to phylogenetic analyses. The selected model was the GTR. Bootstrap support (1,000 replicates) is noted on the branch of the tree.