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1.
Fig. 1.

Fig. 1. From: Database indexing for production MegaBLAST searches.

Schematic of the data structure used for the database index.

Aleksandr Morgulis, et al. Bioinformatics. 2008 Aug 15;24(16):1757-1764.
2.
Fig. 2.

Fig. 2. From: Database indexing for production MegaBLAST searches.

Wall-clock times for 100 indexed and non-indexed searches in a production setting, as a function of logarithm of query length. Considering times to be tied if they are within 0.01 s, indexed search is faster 75 times, non-indexed search is faster 19 times, and they tie on 6 queries. Indexed search is faster on shorter queries and slower on the longest queries.

Aleksandr Morgulis, et al. Bioinformatics. 2008 Aug 15;24(16):1757-1764.

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