PMC

Detailed view of the nonribosomal peptides and phytotoxins region of the Pss B728a genome. Comparison with the corresponding region for the Pst DC3000 is also shown.

Comparison of chromosome structure for Pss B728a vs. Pst DC3000. Axes represent the portions coded for in the order in which they occur in the chromosomes. Top axis, B728a; bottom axis, DC3000. Red represents colinear regions on the + strand of both genomes, and blue represents colinear regions that have been inverted in one of the two genomes. The display was generated by using artemis comparison tool (ACT) (www.sanger.ac.uk/software/artemis/ACT).

Chromosome of Pss B728a with the outermost circle depicting ORFs on the positive strand and the second circle depicting ORFs on the negative strand. The ORFs are color-coded based on the major grouping of role categories as follows: hypothetical proteins (black); conserved hypothetical proteins (light gray); nucleotide metabolism and transport (light red); translation, ribosomal structure, and biogenesis (yellow); signal transduction (lavender); transcription (magenta); lipid metabolism (cyan); carbohydrate metabolism and transport (blue); coenzyme metabolism (pink); energy metabolism (green); DNA replication, recombination, and repair (red); general function prediction (brown); cellular processes (sky blue); amino acid metabolism and transport (orange); and structural RNA (pale green). The third circle represents the ORFs with no orthologs in Pst DC3000 (E <10^-5. The fourth circle represents the palindromic REPs color-coded as follows: family 1 (dark gray), family 2 (red), family 3 (green), family 4 (blue), family 5 (cyan), family 6 (magenta), family 7 (yellow), family 8 (pale green), family 9 (sky blue), family 10 (orange), family 11 (brown), and family 12 (light gray). The fifth and sixth circles represent GC content and skew respectively. The seventh and eighth circles represent the tRNA (green), rRNA (red), and misc_RNA (blue).