YopD and LcrH complexes bind yopQ mRNA. A transcriptional yopD-lcrH fusion (A), lcrH (C), or yopD (E) was cloned into pET16 (Novagen) and transformed into E. coli BL21(DE3). Protein was expressed by IPTG induction of T7 polymerase. Total cell extracts (T) were centrifuged, and the cleared supernatant (L, load) was applied to affinity chromatography on Ni-NTA. Flowthrough (F), column wash samples with increasing stringency (imidazole), and elution with 0.5 M imidazole were analyzed by separating proteins on SDS-15% PAGE and staining with Coomassie blue. The migration of molecular size markers is indicated. 32P-labeled yopQ mRNA was obtained by in vitro transcription of pDA340 with [32P]UTP and gel purification. 32P-labeled yopQ mRNA (10 fmol) was incubated in the presence of increasing amounts of purified YopD and LcrH (0, 0.9, 1.8, 2.7, 3.6, 4.5, 5.4, 6.3, 7.2, 8.1, 9, and 27 ng) (B) or LcrH alone (D) and separated by electrophoresis on a 4% polyacrylamide gel. Specificity of yopQ mRNA binding (9 ng of YopD and LcrH to 10 fmol of 32P-labeled yopQ mRNA) was assessed by adding excess unlabeled yopQ or E. coli tRNA (0, 10, 20, 50, 80, 100, and 500 fmol) (F).