PMC Links for Nucleotide (Select 118430835) - PMC

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Items: 19

Select item 53899471.

Comparative Analysis of Predicted Gene Expression among Crenarchaeal Genomes

Shibsankar Das, Brajadulal Chottopadhyay, Satyabrata Sahoo

Genomics Inform. 2017 Mar; 15(1): 38–47. Published online 2017 Mar 29. doi: 10.5808/GI.2017.15.1.38

PMCID:: PMC5389947

Abstract Article PDF–549K

Select item 50542222.

A Method for Identification of Selenoprotein Genes in Archaeal Genomes

Mingfeng Li, Yanzhao Huang, Yi Xiao

Genomics Proteomics Bioinformatics. 2009 Jun; 7(1-2): 62–70. Published online 2009 Jul 8. doi: 10.1016/S1672-0229(08)60034-0

PMCID:: PMC5054222

Abstract Article PDF–759K

Select item 43908873.

Phylogeny and Taxonomy of Archaea: A Comparison of the Whole-Genome-Based CVTree Approach with 16S rRNA Sequence Analysis

Guanghong Zuo, Zhao Xu, Bailin Hao

Life (Basel) 2015 Mar; 5(1): 949–968. Published online 2015 Mar 17. doi: 10.3390/life5010949

PMCID:: PMC4390887

Abstract Article PDF–1019K

Select item 41640104.

Ori-Finder 2, an integrated tool to predict replication origins in the archaeal genomes

Hao Luo, Chun-Ting Zhang, Feng Gao

Front Microbiol. 2014; 5: 482. Published online 2014 Sep 15. doi: 10.3389/fmicb.2014.00482

PMCID:: PMC4164010

Abstract Article PDF–1.9M

Select item 36120825.

Pyrosequencing Reveals High-Temperature Cellulolytic Microbial Consortia in Great Boiling Spring after In Situ Lignocellulose Enrichment

Joseph P. Peacock, Jessica K. Cole, Senthil K. Murugapiran, Jeremy A. Dodsworth, Jenny C. Fisher, Duane P. Moser, Brian P. Hedlund

PLoS One. 2013; 8(3): e59927. Published online 2013 Mar 29. doi: 10.1371/journal.pone.0059927

PMCID:: PMC3612082

Abstract Article PDF–1.1M

Select item 32690126.

DNA Replication and Strand Asymmetry in Prokaryotic and Mitochondrial Genomes

Xuhua Xia

Curr Genomics. 2012 Mar; 13(1): 16–27. Published online 2012 Mar. doi: 10.2174/138920212799034776

PMCID:: PMC3269012

Abstract Article PDF–275K

Select item 32188647.

Discovery of permuted and recently split transfer RNAs in Archaea

Patricia P Chan, Aaron E Cozen, Todd M Lowe

Genome Biol. 2011; 12(4): R38. Published online 2011 Apr 13. doi: 10.1186/gb-2011-12-4-r38

PMCID:: PMC3218864

Abstract Article PDF–679K

Select item 28730028.

The primary divisions of life: a phylogenomic approach employing composition-heterogeneous methods

Peter G. Foster, Cymon J. Cox, T. Martin Embley

Philos Trans R Soc Lond B Biol Sci. 2009 Aug 12; 364(1527): 2197–2207. doi: 10.1098/rstb.2009.0034

PMCID:: PMC2873002

Abstract Article PDF–500K

Select item 26855679.

Remarkable sequence signatures in archaeal genomes

Ahmed Fadiel, Stuart Lithwick, Gopi Ganji, Stephen W. Scherer

Archaea. 2003 Oct; 1(3): 185–190. Published online 2003 Feb 19. doi: 10.1155/2003/458235

PMCID:: PMC2685567

Abstract Article PDF–118K

Select item 268554810.

Identification of replication origins in archaeal genomes based on the Z-curve method

Ren Zhang, Chun-Ting Zhang

Archaea. 2005 May; 1(5): 335–346. Published online 2004 Nov 9. doi: 10.1155/2005/509646

PMCID:: PMC2685548

Abstract Article PDF–228K

Select item 256622011.

Stygiolobus Rod-Shaped Virus and the Interplay of Crenarchaeal Rudiviruses with the CRISPR Antiviral System

Gisle Vestergaard, Shiraz A. Shah, Ariane Bize, Werner Reitberger, Monika Reuter, Hien Phan, Ariane Briegel, Reinhard Rachel, Roger A. Garrett, David Prangishvili

J Bacteriol. 2008 Oct; 190(20): 6837–6845. Published online 2008 Aug 22. doi: 10.1128/JB.00795-08

PMCID:: PMC2566220

Abstract Article PDF–1.0M

Select item 249316212.

Diversity Surveys and Evolutionary Relationships of aoxB Genes in Aerobic Arsenite-Oxidizing Bacteria

Marianne Quéméneur, Audrey Heinrich-Salmeron, Daniel Muller, Didier Lièvremont, Michel Jauzein, Philippe N. Bertin, Francis Garrido, Catherine Joulian

Appl Environ Microbiol. 2008 Jul; 74(14): 4567–4573. Published online 2008 May 23. doi: 10.1128/AEM.02851-07

PMCID:: PMC2493162

Abstract Article PDF–1.2M

Select item 248068613.

Prokaryotic Gene Finding Based on Physicochemical Characteristics of Codons Calculated from Molecular Dynamics Simulations

Poonam Singhal, B. Jayaram, Surjit B. Dixit, David L. Beveridge

Biophys J. 2008 Jun 1; 94(11): 4173–4183. Published online 2008 Mar 7. doi: 10.1529/biophysj.107.116392

PMCID:: PMC2480686

Abstract Article PDF–780K

Select item 185197914.

A Tale of Two Oxidation States: Bacterial Colonization of Arsenic-Rich Environments

Daniel Muller, Claudine Médigue, Sandrine Koechler, Valérie Barbe, Mohamed Barakat, Emmanuel Talla, Violaine Bonnefoy, Evelyne Krin, Florence Arsène-Ploetze, Christine Carapito, Michael Chandler, Benoît Cournoyer, Stéphane Cruveiller, Caroline Dossat, Simon Duval, Michael Heymann, Emmanuelle Leize, Aurélie Lieutaud, Didier Lièvremont, Yuko Makita, Sophie Mangenot, Wolfgang Nitschke, Philippe Ortet, Nicolas Perdrial, Barbara Schoepp, Patricia Siguier, Diliana D Simeonova, Zoé Rouy, Béatrice Segurens, Evelyne Turlin, David Vallenet, Alain Van Dorsselaer, Stéphanie Weiss, Jean Weissenbach, Marie-Claire Lett, Antoine Danchin, Philippe N Bertin

PLoS Genet. 2007 Apr; 3(4): e53. Prepublished online 2007 Mar 5. Published online 2007 Apr 13. doi: 10.1371/journal.pgen.0030053