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Items: 1 to 20 of 406

1.
A megaplasmid family driving dissemination of multidrug resistance in Pseudomonas
Adrian Cazares, Matthew P. Moore, James P.  J. Hall, Laura L. Wright, Macauley Grimes, Jean-Guillaume Emond-Rhéault, Pisut Pongchaikul, Pitak Santanirand, Roger C. Levesque, Joanne L. Fothergill, Craig Winstanley
Nat Commun. 2020; 11: 1370. Published online 2020 Mar 13. doi: 10.1038/s41467-020-15081-7
PMCID:
PMC7070040
ArticlePDF–1.9M
2.
Oral colonisation by antimicrobial-resistant Gram-negative bacteria among long-term care facility residents: prevalence, risk factors, and molecular epidemiology
Mi Nguyen-Tra Le, Shizuo Kayama, Mineka Yoshikawa, Toshinori Hara, Seiya Kashiyama, Junzo Hisatsune, Keiko Tsuruda, Makoto Onodera, Hiroki Ohge, Kazuhiro Tsuga, Motoyuki Sugai
Antimicrob Resist Infect Control. 2020; 9: 45. Published online 2020 Mar 4. doi: 10.1186/s13756-020-0705-1
PMCID:
PMC7057508
ArticlePDF–1.2M
3.
The SNAP hypothesis: Chromosomal rearrangements could emerge from positive Selection during Niche Adaptation
Gerrit Brandis, Diarmaid Hughes
PLoS Genet. 2020 Mar; 16(3): e1008615. Published online 2020 Mar 4. doi: 10.1371/journal.pgen.1008615
PMCID:
PMC7055797
ArticlePDF–1.5M
4.
Full Transcriptomic Response of Pseudomonas aeruginosa to an Inulin-Derived Fructooligosaccharide
José Manuel Rubio-Gómez, Carlos Molina Santiago, Zulema Udaondo, Mireia Tena Garitaonaindia, Tino Krell, Juan-Luis Ramos, Abdelali Daddaoua
Front Microbiol. 2020; 11: 202. Published online 2020 Feb 20. doi: 10.3389/fmicb.2020.00202
PMCID:
PMC7044273
ArticlePDF–2.9M
5.
Integrated Genome-Wide Analysis of an Isogenic Pair of Pseudomonas aeruginosa Clinical Isolates with Differential Antimicrobial Resistance to Ceftolozane/Tazobactam, Ceftazidime/Avibactam, and Piperacillin/Tazobactam
Weihua Huang, Joelle El Hamouche, Guiqing Wang, Melissa Smith, Changhong Yin, Abhay Dhand, Nevenka Dimitrova, John T. Fallon
Int J Mol Sci. 2020 Feb; 21(3): 1026. Published online 2020 Feb 4. doi: 10.3390/ijms21031026
PMCID:
PMC7037351
ArticlePDF–2.0M
6.
The extracytoplasmic function sigma factor σVreI is active during infection and contributes to phosphate starvation-induced virulence of Pseudomonas aeruginosa
Joaquín R. Otero-Asman, José M. Quesada, Kin K. Jim, Alain Ocampo-Sosa, Cristina Civantos, Wilbert Bitter, María A. Llamas
Sci Rep. 2020; 10: 3139. Published online 2020 Feb 21. doi: 10.1038/s41598-020-60197-x
PMCID:
PMC7035377
ArticlePDF–1.7M
7.
Transcriptomic Response in Pseudomonas aeruginosa towards Treatment with a Kaempferol Isolated from Melastoma malabathricum Linn Leaves
Mourouge Saadi Alwash, Wan Syaidatul Aqma, Wan Yaacob Ahmad, Nazlina Ibrahim
Int J Microbiol. 2020; 2020: 6915483. Published online 2020 Feb 5. doi: 10.1155/2020/6915483
PMCID:
PMC7023722
ArticlePDF–503K
8.
A Universal, Genomewide GuideFinder for CRISPR/Cas9 Targeting in Microbial Genomes
Michelle Spoto, Changhui Guan, Elizabeth Fleming, Julia Oh
mSphere. 2020 Jan-Feb; 5(1): e00086-20. Published online 2020 Feb 12. doi: 10.1128/mSphere.00086-20
PMCID:
PMC7021469
ArticlePDF–2.1M
9.
Novel Bacterial Diversity and Fragmented eDNA Identified in Hyperbiofilm-Forming Pseudomonas aeruginosa Rugose Small Colony Variant
Binbin Deng, Subhadip Ghatak, Subendu Sarkar, Kanhaiya Singh, Piya Das Ghatak, Shomita S. Mathew-Steiner, Sashwati Roy, Savita Khanna, Daniel J. Wozniak, David W. McComb, Chandan K. Sen
iScience. 2020 Feb 21; 23(2): 100827. Published online 2020 Jan 9. doi: 10.1016/j.isci.2020.100827
PMCID:
PMC6997594
ArticlePDF–5.6M
10.
Simulating metagenomic stable isotope probing datasets with MetaSIPSim
Samuel E. Barnett, Daniel H. Buckley
BMC Bioinformatics. 2020; 21: 37. Published online 2020 Jan 30. doi: 10.1186/s12859-020-3372-6
PMCID:
PMC6993524
ArticlePDF–1.7M
11.
RNA G-Quadruplex Structures Mediate Gene Regulation in Bacteria
Xiaolong Shao, Weitong Zhang, Mubarak Ishaq Umar, Hei Yuen Wong, Zijing Seng, Yingpeng Xie, Yingchao Zhang, Liang Yang, Chun Kit Kwok, Xin Deng
mBio. 2020 Jan-Feb; 11(1): e02926-19. Published online 2020 Jan 21. doi: 10.1128/mBio.02926-19
PMCID:
PMC6974567
ArticlePDF–2.0M
12.
Quantitative Framework for Model Evaluation in Microbiology Research Using Pseudomonas aeruginosa and Cystic Fibrosis Infection as a Test Case
Daniel M. Cornforth, Frances L. Diggle, Jeffrey A. Melvin, Jennifer M. Bomberger, Marvin Whiteley
mBio. 2020 Jan-Feb; 11(1): e03042-19. Published online 2020 Jan 14. doi: 10.1128/mBio.03042-19
PMCID:
PMC6960289
ArticlePDF–1.5M
13.
Genome sequence of Pseudomonas aeruginosa PAO1161, a PAO1 derivative with the ICEPae1161 integrative and conjugative element
Adam Kawalek, Karolina Kotecka, Magdalena Modrzejewska, Jan Gawor, Grazyna Jagura-Burdzy, Aneta Agnieszka Bartosik
BMC Genomics. 2020; 21: 14. Published online 2020 Jan 6. doi: 10.1186/s12864-019-6378-6
PMCID:
PMC6945700
ArticlePDF–2.4M
14.
Generation of a highly attenuated strain of Pseudomonas aeruginosa for commercial production of alginate
Meagan E. Valentine, Brandon D. Kirby, Thomas R. Withers, Shannon L. Johnson, Timothy E. Long, Youai Hao, Joseph S. Lam, Richard M. Niles, Hongwei D. Yu
Microb Biotechnol. 2020 Jan; 13(1): 162–175. Published online 2019 Apr 21. doi: 10.1111/1751-7915.13411
PMCID:
PMC6922527
ArticlePDF–5.0M
15.
Hybridization-based capture of pathogen mRNA enables paired host-pathogen transcriptional analysis
Viktoria Betin, Cristina Penaranda, Nirmalya Bandyopadhyay, Rui Yang, Angela Abitua, Roby P. Bhattacharyya, Amy Fan, Roi Avraham, Jonathan Livny, Noam Shoresh, Deborah T. Hung
Sci Rep. 2019; 9: 19244. Published online 2019 Dec 17. doi: 10.1038/s41598-019-55633-6
PMCID:
PMC6917760
ArticlePDF–2.0M
16.
Draft genomes and initial characteriaztion of siderophore producing pseudomonads isolated from mine dump and mine drainage
Marika Hofmann, Thomas Heine, Vivian Schulz, Sarah Hofmann, Dirk Tischler
Biotechnol Rep (Amst) 2020 Mar; 25: e00403. Published online 2019 Nov 23. doi: 10.1016/j.btre.2019.e00403
PMCID:
PMC6906695
ArticlePDF–1.1M
17.
Conditional Hfq Association with Small Noncoding RNAs in Pseudomonas aeruginosa Revealed through Comparative UV Cross-Linking Immunoprecipitation Followed by High-Throughput Sequencing
Kotaro Chihara, Thorsten Bischler, Lars Barquist, Vivian A. Monzon, Naohiro Noda, Jörg Vogel, Satoshi Tsuneda
mSystems. 2019 Nov-Dec; 4(6): e00590-19. Published online 2019 Dec 3. doi: 10.1128/mSystems.00590-19
PMCID:
PMC6890931
ArticlePDF–2.0M
18.
Behavioral heterogeneity in quorum sensing can stabilize social cooperation in microbial populations
Kelei Zhao, Linjie Liu, Xiaojie Chen, Ting Huang, Lianming Du, Jiafu Lin, Yang Yuan, Yingshun Zhou, Bisong Yue, Kun Wei, Yiwen Chu
BMC Biol. 2019; 17: 20. Published online 2019 Mar 6. doi: 10.1186/s12915-019-0639-3
PMCID:
PMC6889464
ArticlePDF–1.8M
19.
High-Risk International Clones of Carbapenem-Nonsusceptible Pseudomonas aeruginosa Endemic to Indonesian Intensive Care Units: Impact of a Multifaceted Infection Control Intervention Analyzed at the Genomic Level
Andreu Coello Pelegrin, Yulia Rosa Saharman, Aurélien Griffon, Mattia Palmieri, Caroline Mirande, Anis Karuniawati, Rudyanto Sedono, Dita Aditianingsih, Wil H. F. Goessens, Alex van Belkum, Henri A. Verbrugh, Corné H. W. Klaassen, Juliëtte A. Severin
mBio. 2019 Nov-Dec; 10(6): e02384-19. Published online 2019 Nov 12. doi: 10.1128/mBio.02384-19
Correction in:
mBio. 2020 May-Jun; 11(3): e01372-20.
PMCID:
PMC6851282
ArticlePDF–2.3M
20.
CNN-MGP: Convolutional Neural Networks for Metagenomics Gene Prediction
Amani Al-Ajlan, Achraf El Allali
Interdiscip Sci. 2019; 11(4): 628–635. Published online 2018 Dec 27. doi: 10.1007/s12539-018-0313-4
PMCID:
PMC6841655
ArticlePDF–1.1M

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