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Select item 70021041.

Whole‐genome comparison between the type strain of Halobacterium salinarum (DSM 3754^T) and the laboratory strains R1 and NRC‐1

Friedhelm Pfeiffer, Gerald Losensky, Anita Marchfelder, Bianca Habermann, Mike Dyall‐Smith

Microbiologyopen. 2020 Feb; 9(2): e974. Published online 2019 Dec 3. doi: 10.1002/mbo3.974

PMCID:: PMC7002104

Article PDF–2.7M

Select item 66247602.

The Genome Sequence of the Halobacterium salinarum Type Strain Is Closely Related to That of Laboratory Strains NRC-1 and R1

Friedhelm Pfeiffer, Anita Marchfelder, Bianca Habermann, Mike L. Dyall-Smith

Microbiol Resour Announc. 2019 Jul; 8(28): e00429-19. Published online 2019 Jul 11. doi: 10.1128/MRA.00429-19

PMCID:: PMC6624760

Article PDF–150K

Select item 65913183.

N-Glycosylation Is Important for Halobacterium salinarum Archaellin Expression, Archaellum Assembly and Cell Motility

Marianna Zaretsky, Cynthia L. Darnell, Amy K. Schmid, Jerry Eichler

Front Microbiol. 2019; 10: 1367. Published online 2019 Jun 18. doi: 10.3389/fmicb.2019.01367

PMCID:: PMC6591318

Article PDF–1.9M

Select item 62024544.

Copy number variation is associated with gene expression change in archaea

Keely A. Dulmage, Cynthia L. Darnell, Angie Vreugdenhil, Amy K. Schmid

Microb Genom. 2018 Sep; 4(9): e000210. Published online 2018 Aug 24. doi: 10.1099/mgen.0.000210

PMCID:: PMC6202454

Article PDF–3.2M

Select item 45001465.

A Manual Curation Strategy to Improve Genome Annotation: Application to a Set of Haloarchael Genomes

Friedhelm Pfeiffer, Dieter Oesterhelt

Life (Basel) 2015 Jun; 5(2): 1427–1444. Published online 2015 Jun 2. doi: 10.3390/life5021427

PMCID:: PMC4500146

Article PDF–909K

Select item 43908876.

Phylogeny and Taxonomy of Archaea: A Comparison of the Whole-Genome-Based CVTree Approach with 16S rRNA Sequence Analysis

Guanghong Zuo, Zhao Xu, Bailin Hao

Life (Basel) 2015 Mar; 5(1): 949–968. Published online 2015 Mar 17. doi: 10.3390/life5010949

PMCID:: PMC4390887

Article PDF–1019K

Select item 42927707.

Novel pili-like surface structures of Halobacterium salinarum strain R1 are crucial for surface adhesion

Gerald Losensky, Lucia Vidakovic, Andreas Klingl, Felicitas Pfeifer, Sabrina Fröls

Front Microbiol. 2014; 5: 755. Published online 2015 Jan 13. doi: 10.3389/fmicb.2014.00755

PMCID:: PMC4292770

Article PDF–3.9M

Select item 41871968.

Properties of Halococcus salifodinae, an Isolate from Permian Rock Salt Deposits, Compared with Halococci from Surface Waters

Andrea Legat, Ewald B. M. Denner, Marion Dornmayr-Pfaffenhuemer, Peter Pfeiffer, Burkhard Knopf, Harald Claus, Claudia Gruber, Helmut König, Gerhard Wanner, Helga Stan-Lotter

Life (Basel) 2013 Mar; 3(1): 244–259. Published online 2013 Feb 28. doi: 10.3390/life3010244

PMCID:: PMC4187196

Article PDF–293K

Select item 41695679.

Transcription Start Site Associated RNAs (TSSaRNAs) Are Ubiquitous in All Domains of Life

Livia S. Zaramela, Ricardo Z. N. Vêncio, Felipe ten-Caten, Nitin S. Baliga, Tie Koide

PLoS One. 2014; 9(9): e107680. Published online 2014 Sep 19. doi: 10.1371/journal.pone.0107680

PMCID:: PMC4169567

Article PDF–3.2M

Select item 416401010.

Ori-Finder 2, an integrated tool to predict replication origins in the archaeal genomes

Hao Luo, Chun-Ting Zhang, Feng Gao

Front Microbiol. 2014; 5: 482. Published online 2014 Sep 15. doi: 10.3389/fmicb.2014.00482

PMCID:: PMC4164010

Article PDF–1.9M

Select item 406088311.

An evolutionarily conserved RNase-based mechanism for repression of transcriptional positive autoregulation

Elisabeth J. Wurtmann, Alexander V. Ratushny, Min Pan, Karlyn D. Beer, John D. Aitchison, Nitin S. Baliga

Mol Microbiol. Author manuscript; available in PMC 2015 Apr 1.

Published in final edited form as: Mol Microbiol. 2014 Apr; 92(2): 369–382. Published online 2014 Mar 19. doi: 10.1111/mmi.12564

PMCID:: PMC4060883

Article PDF–1.1M

Select item 395762912.

Model Organisms Retain an “Ecological Memory” of Complex Ecologically Relevant Environmental Variation

Karlyn D. Beer, Elisabeth J. Wurtmann, Nicolás Pinel, Nitin S. Baliga

Appl Environ Microbiol. 2014 Mar; 80(6): 1821–1831. doi: 10.1128/AEM.03280-13

PMCID:: PMC3957629

Article PDF–3.1M

Select item 381213513.

GenomeFingerprinter: The Genome Fingerprint and the Universal Genome Fingerprint Analysis for Systematic Comparative Genomics

Yuncan Ai, Hannan Ai, Fanmei Meng, Lei Zhao

PLoS One. 2013; 8(10): e77912. Published online 2013 Oct 29. doi: 10.1371/journal.pone.0077912

PMCID:: PMC3812135

Article PDF–1.7M

Select item 344367614.

The RosR transcription factor is required for gene expression dynamics in response to extreme oxidative stress in a hypersaline-adapted archaeon

Kriti Sharma, Nicholas Gillum, J Lomax Boyd, Amy Schmid

BMC Genomics. 2012; 13: 351. Published online 2012 Jul 30. doi: 10.1186/1471-2164-13-351

PMCID:: PMC3443676

Article PDF–1.6M

Select item 343681515.

Stitching gene fragments with a network matching algorithm improves gene assembly for metagenomics

Yu-Wei Wu, Mina Rho, Thomas G. Doak, Yuzhen Ye

Bioinformatics. 2012 Sep 15; 28(18): i363–i369. Published online 2012 Sep 3. doi: 10.1093/bioinformatics/bts388

PMCID:: PMC3436815

Article PDF–491K

Select item 332629216.

Transcriptome-wide discovery of circular RNAs in Archaea

Miri Danan, Schraga Schwartz, Sarit Edelheit, Rotem Sorek

Nucleic Acids Res. 2012 Apr; 40(7): 3131–3142. Published online 2011 Dec 2. doi: 10.1093/nar/gkr1009

PMCID:: PMC3326292

Article PDF–4.5M

Select item 326171117.

Niche adaptation by expansion and reprogramming of general transcription factors

Serdar Turkarslan, David J Reiss, Goodwin Gibbins, Wan Lin Su, Min Pan, J Christopher Bare, Christopher L Plaisier, Nitin S Baliga

Mol Syst Biol. 2011; 7: 554. Published online 2011 Nov 22. doi: 10.1038/msb.2011.87

PMCID:: PMC3261711

Article PDF–1.9M

Select item 273596718.

Estimating the Fraction of Non-Coding RNAs in Mammalian Transcriptomes

Yurong Xin, Giulio Quarta, Hin Hark Gan, Tamar Schlick

Bioinform Biol Insights. 2008; 2: 75–94. Published online 2008 Mar 1. doi: 10.4137/bbi.s443

PMCID:: PMC2735967

Article PDF–670K

Select item 271087319.

Prevalence of transcription promoters within archaeal operons and coding sequences

Tie Koide, David J Reiss, J Christopher Bare, Wyming Lee Pang, Marc T Facciotti, Amy K Schmid, Min Pan, Bruz Marzolf, Phu T Van, Fang-Yin Lo, Abhishek Pratap, Eric W Deutsch, Amelia Peterson, Dan Martin, Nitin S Baliga

Mol Syst Biol. 2009; 5: 285. Published online 2009 Jun 16. doi: 10.1038/msb.2009.42