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Sci Rep. 2018; 8: 479.
Published online 2018 Jan 11. doi: 10.1038/s41598-017-18953-z
PMCID: PMC5764990
PMID: 29323219

Electromagnetic Radiation Disturbed the Photosynthesis of Microcystis aeruginosa at the Proteomics Level

Associated Data

Data Availability Statement

Abstract

Photosynthesis of Microcystis aeruginosa under Electromagnetic Radiation (1.8 GHz, 40 V/m) was studied by using the proteomics. A total of 30 differentially expressed proteins, including 15 up-regulated and 15 down-regulated proteins, were obtained in this study. The differentially expressed proteins were significantly enriched in the photosynthesis pathway, in which the protein expression levels of photosystems II cytochrome b559 α subunit, cytochrome C550, PsbY, and F-type ATP synthase (a, b) decreased. Our results indicated that electromagnetic radiation altered the photosynthesis-related protein expression levels, and aimed at the function of photosynthetic pigments, photosystems II potential activity, photosynthetic electron transport process, and photosynthetic phosphorylation process of M. aeruginosa. Based on the above evidence, that photoreaction system may be deduced as a target of electromagnetic radiation on the photosynthesis in cyanobacteria; the photoreaction system of cyanobacteria is a hypothetical “shared target effector” that responds to light and electromagnetic radiation; moreover, electromagnetic radiation does not act on the functional proteins themselves but their expression processes.

Introduction

Electromagnetic radiation is an important environmental factor. On October 2, 2015, the United Nations Economic Commission for Europe (UNECE) issued a paper titled, “The UNECE–ITU Smart Sustainable City Indicators”1. In the environmental field, electromagnetic radiation was listed as a core indicator, together with solid waste disposal and perception of environmental quality. Electromagnetic radiation not only has a potential long-term effect and threat to public health but may also impact the ecological environment. In recent decades, researchers have carried numerous experiments to evaluate the biological and health effects of in vitro and in vivo exposure to non-ionizing radiofrequency fields in animals, humans and their isolated cells2. Plants were also used in studying the effects of EMF on living organisms, and electromagnetic irradiation induced different alterations in the enzyme activities3, and affected gene expression in plants4,5.

Photosynthesis is the most basic material and energy metabolism in the biosphere. Light is an electromagnetic wave with an electromagnetic radiation speed of 2.998 × 108 m/s, which is the speed of light. The wavelength of each radiation is different, and the spectra required for photosynthesis reside in the visible range (380–750 nm). Quantity (duration and intensity) and quality (color or wavelength) of electromagnetic waves are key factors that are involved in regulating growth and physiological processes in photosynthetic organisms6. Han investigated the effects of different light colors on photosynthetic pigments of cyanobacteria, and found that red light (660 nm) alters both the amounts and proportions of phycocyanin and allophycocyanin; moreover, cyanobacteria responded to red light by regulating the composition and location of phycobilisomes7. Ultraviolet-A (320–400 nm) exposure significantly decreased the photosynthetic parameters of unicellular green alga8. Effects of the 300 MHz electromagnetic field were observed on the photosynthetic cells of tobacco, and results showed that the effects generated damage in the membrane of photosynthetic cells in the tobacco leaves, the barricade in the transmission process of electrons in photosynthesis, and decreased potential activity and photochemical efficiency of photosystems II9. Microwaves with low power density significantly influenced quantitative increase in the photosynthesis pigment levels of the vegetal cells10. Our previous study found that oxidative stress of Microcystis aeruginosa (M. aeruginosa) could be induced under electromagnetic radiation exposure, and regulations on key enzymes of photosynthesis (Rubisco and FBA) by electromagnetic radiation indicated that electromagnetic radiation could affect the photosynthesis of M. aeruginosa cells11.

The influence of Electromagnetic wave on living organisms has been observed in different animals and plants species. However, studies on the effects of electromagnetic radiation on photosynthesis have been few and mainly focused on the phenotypic level. Moreover, information is lacking regarding the mechanism of electromagnetic waves on photosynthesis. How electromagnetic radiation or photoelectromagnetic coupling affects photosynthesis and whether electromagnetic radiation and light have a homologous receptor or receptors should be investigated. We tried to observe the mechanism of electromagnetic radiation in photosynthesis at the proteomics level in this novelty study.

M. aeruginosa belongs to the order cyanophyta, which is the dominant population in many bloom-forming lakes, which occupy important niches in the environment and is a common habitat of algae with high environmental sensitivity. The most common and widely used mobile communication frequency in mainland China is 1.8 GHz. In this paper, the effects of 1.8 GHz and 40 V/m electromagnetic radiation on the photosynthetic system protein expression of algal cells were examined through proteomics to explore the mechanism of electromagnetic radiation on photosynthesis.

Results

Differential protein analysis

Between the treatment and control groups, 30 differentially expressed proteins were determined, 15 of which were up-regulated and 15 were down-regulated. The top 10 different protein expressions contained 4 uncharacterized proteins that were obtained and the molecular functions of the other 6 proteins were mainly related to chlorophyll binding, structural molecular activity, proton-transporting ATP synthase activity, and electron carrier activity. A detailed list of differential proteins is shown in Table 1.

Table 1

Differential protein list.

NameGeneProteinCKElog2_FC (E/CK)Pvalue
C789_1144isiAIron stress-induced chlorophyll-binding protein1.07 ± 0.071.57 ± 0.120.556610.00245
C789_1150isiAIron stress-induced chlorophyll-binding protein1.07 ± 0.071.57 ± 0.120.556610.00245
C789_1730psbVCytochrome c-5500.98 ± 0.030.78 ± 0.01−0.327230.00047
C789_2057C789_2057Uncharacterized protein0.96 ± 0.071.21 ± 0.140.3319260.04327
C789_2058coaDPhosphopantetheineadenylyltransferase1.01 ± 0.080.80 ± 0.07−0.33280.02801
C789_2073atpBATP synthase subunit a1.04 ± 0.030.83 ± 0.08−0.317870.01645
C789_2075atpGATP synthase subunit b′1.01 ± 0.010.71 ± 0.09−0.507330.00680
C789_2296C789_2296NUDIX domain protein1.01 ± 0.011.22 ± 0.060.2812620.00259
C789_2366speBAgmatinase0.94 ± 0.061.13 ± 0.030.2648250.00981
C789_2954ruvBHolliday junction ATP-dependent DNA helicase RuvB1.04 ± 0.040.86 ± 0.05−0.266280.01180
C789_3280C789_3280Uncharacterized protein1.02 ± 0.040.71 ± 0.15−0.516810.04331
C789_4303psbYPhotosystem II protein Y1.00 ± 0.010.76 ± 0.06−0.410250.00312
C789_428C789_428Uncharacterized protein0.93 ± 0.061.17 ± 0.110.3200730.03007
C789_4415tpiATriosephosphate isomerase0.99 ± 0.021.20 ± 0.030.2829070.00040
C789_4588gvpAIIGas vesicle structural protein1.02 ± 0.050.76 ± 0.08−0.426090.01408
C789_4589gvpAIIGas vesicle structural protein1.02 ± 0.050.76 ± 0.08−0.426090.01408
C789_4839C789_4839Uncharacterized protein1.01 ± 0.011.24 ± 0.030.3017370.00018
C789_5042hemCPorphobilinogen deaminase0.92 ± 0.101.12 ± 0.010.2812140.03221
C789_53C789_53Uncharacterized protein1.06 ± 0.050.74 ± 0.01−0.515870.00034
C789_5304psbECytochrome b559 subunit alpha1.01 ± 0.020.64 ± 0.12−0.66090.01468
C789_549C789_549Uncharacterized protein1.04 ± 0.040.84 ± 0.04−0.315250.00225
C789_639porBS-layer domain protein1.03 ± 0.031.35 ± 0.110.3936780.00619
C789_83C789_83Uncharacterized protein0.99 ± 0.051.96 ± 0.110.9790318.70E-05
C789_820C789_820Uncharacterized protein0.96 ± 0.031.19 ± 0.060.306990.00347
C789_844gshBGlutathione synthetase0.96 ± 0.040.76 ± 0.10−0.334660.04759
C789_87C789_87Uncharacterized protein0.95 ± 0.061.61 ± 0.180.7596830.00218
C789_895C789_895Uncharacterized protein0.99 ± 0.050.81 ± 0.02−0.28580.00383
C789_898mdnFMethyltransferase small domain protein0.92 ± 0.131.23 ± 0.100.4130780.04149
C789_RS038450.97 ± 0.031.26 ± 0.150.3783970.01802
C789_1103C789_1103Uncharacterized protein1.06 ± 0.060.80 ± 0.10−0.397270.02415

Differential protein GO enrichment analysis

The treatment group was compared with the control group in terms of cell composition analysis (Table 2). Differential proteins were mainly enriched in the cytoplasmic vesicle, protein complex, organelle membrane, membrane protein complex, proton-transporting two-sector ATPase complex, membrane-bounded organelle, and cytoplasmic vesicle. The cytoplasmic vesicle partial protein was the most enriched, and the number of differential protein was 2, which comprising 14.29% of the total differential protein; followed by protein complex-related protein, the number of differential protein was 7, which comprising 50% of the total differential protein.

Table 2

CKP-VS-EP GO Enrichment.

NumberGO IDDescriptionGeneRatio (14)BgRatio (447)pvalueqvalue
Cellular Component
1GO:0044433cytoplasmic vesicle part2 (14.29%)2 (0.45%)0.0009130.015885
2GO:0043234protein complex7 (50%)70 (15.66%)0.0023920.015885
3GO:0031090organelle membrane2 (14.29%)3 (0.67%)0.0026900.015885
4GO:0098796membrane protein complex5 (35.71%)36 (8.05%)0.0030180.015885
5GO:0033177proton-transporting two-sector ATPase complex, proton-transporting domain2 (14.29%)4 (0.89%)0.0052820.018535
6GO:0043227membrane-bounded organelle2 (14.29%)4 (0.89%)0.0052820.018535
7GO:0031410cytoplasmic vesicle2 (14.29%)7 (1.57%)0.0175110.046081
8GO:0031982vesicle2 (14.29%)7 (1.57%)0.0175110.046081
Molecular Function
1GO:0046906tetrapyrrole binding4 (26.67%)20 (1.59%)0.0000570.002934
Biological Process
1GO:0022900electron transport chain4 (26.67%)20 (1.71%)0.0000760.008599
2GO:0055114oxidation-reduction process4 (26.67%)27 (2.31%)0.0002600.014764
3GO:0006091generation of precursor metabolites and energy4 (26.67%)39 (3.34%)0.0011100.042074

The second column is the GO term ID; the third column is the function description of the GO term; the fourth column is the number of differential genes that are noted to a GO term and the percentage of differential genes to the total number of differential genes (number of headings); the fifth is the number of genes annotated to a GO term and the percentage of genes to the total number of genes (number of headings); the sixth column is the P value; the seventh column is the Q value after multiple checks.

From the molecular functional analysis, 1.8 GHz radiofrequency radiation mainly had a significant effect on tetrapyrrole binding. Moreover, certain effects on the related proteins took place, such as monovalent inorganic cation transmembrane transporter activity, transition metal ion binding, inorganic cation transmembrane transporter activity, hydrolase activity, and adenylyltransferase activity. Four differential proteins related to tetrapyrrole binding existed, comprising 26.67% of the total differential gene.

From the biological process analysis, the most abundant GO protein of the differential protein was located in the electron transport chain, oxidation–reduction process, and generation of precursor metabolites and energy. The number of differential protein of each item was 4 and each comprised 26.67% of the total differential gene. Moreover, the differential genes were mainly associated with ATP biosynthesis and metabolic processes, nucleoside triphosphate metabolism and biosynthesis processes, nucleosides, nucleoside monophosphate, nucleotide biosynthesis and metabolism, glutathione metabolic process, protein-heme linkage, protein cofactor connections, hydrogen transport, glycosylated compounds synthetic processes, cell metabolism processes, biosynthesis, and metabolism.

Analysis of Pathway Enrichment of Differential Proteins

KEGG is a knowledge base for systematic analysis of gene functions, linking genomic information with higher order functional information, which is stored in the PATHWAY database (http://www.kegg.jp/kegg/kegg1.html). Algal cells were exposed to radio frequency electromagnetic radiation and differential proteins mainly focused on the photosynthetic pathways. Based on Fig. 1 of the photosynthesis in Kanehisa laboratories1214, the significant differences in markers are shown in Fig. 1 and the corresponding differentially expressed proteins are listed in Table 3. Results showed that five differentially expressed proteins are related to photosynthesis, and the expressions of differential proteins were down-regulated after electromagnetic stress. As shown in Fig. 1, the expressions of cytochrome b559 (Cytb559) subunit alpha, cytochrome c-550, protein Y (PsbY), protein ATP synthase subunit a, and protein ATP synthase subunit b were down-regulated. Moreover, the differential proteins were mainly related to inositol phosphate metabolism, oxidative phosphorylation, pantothenate and CoA biosynthesis, homologous recombination, glutathione metabolism, fructose and mannose metabolism, arginine and proline metabolism, carbon fixation in photosynthetic organisms, cysteine and methionine metabolism, porphyrin and chlorophyll metabolism, glycolysis/gluconeogenesis, purine metabolism, carbon metabolism, and biosynthesis of amino acid function (Table 4).

An external file that holds a picture, illustration, etc.
Object name is 41598_2017_18953_Fig1_HTML.jpg

M. aeruginosa cells were exposed to radio frequency electromagnetic radiation and differential proteins mainly focused on the photosynthetic pathways, the significant differential proteins are marked by green box. As shown in Fig. 1, the expressions of cytochrome b559 subunit alpha, cytochrome c-550, protein Y, protein ATP synthase subunit a, and protein ATP synthase subunit b were down-regulated. This image is copyright permitted by KEGG1214, http://www.kegg.jp/kegg/kegg1.html.

Table 3

Differential proteins of Photosynthetic pathway.

GeneProteinlog2(FC)
psbE(C789_5304)Cytochrome b559 subunit alpha−0.66
psbV(C789_1730)Cytochrome c-550−0.33
PsbY(C789_4303)Photosystem II protein Y−0.41
atpB(C789_2073)Protein ATP synthase subunit a−0.32
atpG(C789_2075)Protein ATP synthase subunit b−0.51

Table 4

Significant enrichment KEGG Pathway.

NumberPathwayDEGs genes with pathway annotation (12)All genes with pathway annotation (689)PvalueQvaluePathway ID
1Photosynthesis5 (41.67%)47 (6.82%)0.0006600.009897ko00195
2Inositol phosphate metabolism1 (8.33%)3 (0.44%)0.0514180.385637ko00562
3Oxidative phosphorylation2 (16.67%)37 (5.37%)0.1319910.405275ko00190
4Pantothenate and CoA biosynthesis1 (8.33%)9 (1.31%)0.1470580.405275ko00770
5Homologous recombination1 (8.33%)9 (1.31%)0.1470580.405275ko03440
6Glutathione metabolism1 (8.33%)10 (1.45%)0.1621100.405275ko00480
7Fructose and mannose metabolism1 (8.33%)15 (2.18%)0.2337830.434740ko00051
8Arginine and proline metabolism1 (8.33%)16 (2.32%)0.2474250.434740ko00330
9Carbon fixation in photosynthetic organisms1 (8.33%)17 (2.47%)0.2608440.434740ko00710
10Cysteine and methionine metabolism1 (8.33%)23 (3.34%)0.3368570.505286ko00270
11Porphyrin and chlorophyll metabolism1 (8.33%)33 (4.79%)0.4477970.572373ko00860
12Glycolysis/Gluconeogenesis1 (8.33%)34 (4.93%)0.4578990.572373ko00010
13Purine metabolism1 (8.33%)41 (5.95%)0.5240000.604616ko00230
14Carbon metabolism1 (8.33%)71 (10.3%)0.7318400.784114ko01200
15Biosynthesis of amino acids1 (8.33%)94 (13.64%)0.8305970.830597ko01230

Discussion

During M. aeruginosa growth and development, changes in the environmental conditions, such as temperature, light, CO2, and nutrient composition, may induce changes in gene and protein expressions. Photosynthesis is the most basic material and energy metabolism of the biosphere and one of the most sensitive physiological processes for environmental change. Studies have shown that certain natural stresses (such as salt and sulfur deficiency) may reduce light-harvesting and photosynthetic activities, photosynthetic systems I and II, cytochrome b6/f, and ATP synthase gene expression levels. Low-temperature treatment, cytochrome a-b binding protein in the process of photosynthetic light absorption, cytochrome b559α, oxygen-enhanced protein, cytochrome b6-f complex Fe-S protein, and the photosystems I reaction center subunit protein showed significant down-regulation1517. Electromagnetic waves also had certain effects on photosynthesis10,11,18. Under the action of a low level radio frequency electromagnetic field of 300 MHz, chlorophyll fluorescence dynamics process and ultra-weak photoemission in tobacco leaf underwent changes. Responses of the fluorescence dynamics parameters, such as F0, FV/F0, FV/Fm, ΔFV/T, and T1/2, and the amount of ultra-weak photoemission to the radiating power of electromagnetic field appeared to be the characters of non-linear and power windows. Non-thermal effects of electromagnetic field were observed on the photosynthetic cells of tobacco. The effects generated damage in the membrane of photosynthetic cells in the tobacco leaf, the barricade of transmission process of electrons in photosynthesis, and the decrease in potential active and photochemical efficiency of photosystems II10,18. We investigated the proteomics of M. aeruginosa under electromagnetic radiation exposure and found that the differentially expressed proteins were significantly enriched in the photosynthetic pathway (Table 4).

In the exclusion of visible light in the environment, the expressions levels of Cytb559 α subunit, cytochrome c-550, and PsbY proteins were down-regulated in photosystems II of M. aeruginosa under electromagnetic radiation exposure (Fig. 1). The process of converting light energy into chemical energy by photosynthetic organisms was mainly catalyzed by four multi-subunit membrane-protein complexes: photosystem I (PSI), photosystem II (PSII), cytochrome b6f complex, and F-ATPase19. PSII mainly consists of D1, D2, CP43, CP47, Cytb559, other transmembrane proteins, several hydrophilic peripheral proteins, some small molecular weight protein subunits, and other components20,21. PSII is one of the most susceptible parts of the photosynthetic apparatus and is important in the photosynthetic response in higher plants to environmental perturbations and stresses22. Moreover, Cytb559 has redox activity that can produce photooxidation and photoreduction. It is a cytochrome molecule that binds to PSII and consists of two polypeptides (Mr4400 and 9300)023. Cytb559 consists of two protein subunits (PsbE and PsbF) that ligate a heme-group between them. The exact function of this component in PSII has not yet been clarified, but its crucial role for the assembly and photo-protection in prokaryotic complexes has been suggested24. Furthermore, a functional role of Cytb559 in the protection of PSII under photoinhibition conditions in vivo has been determined25. Cytb559 plays an important role in the cyclic electron flow processes that protect PSII from light-induced damage during photoinhibitory conditions26. PsbY protein is important in controlling the redox of Cytb559; moreover, the PsbY protein Cytb559 is only present in its oxidized, and low potential form and plants with PsbY depletion are highly susceptible to photoinhibition24. Cytochrome c-550 plays a substantial role in maintaining the stability and function of the manganese cluster in algal PSII27. The absence of cytochrome c-550 hinders the balance of photosynthetic system under nitrogen-deficient conditions, which affects the nitrogen tolerance of bacteria28.

Expression levels of Cytb559 α subunit, cytochrome c-550, and PsbY protein in photosystem II of M. aeruginosa were down-regulated under electromagnetic radiation exposure, which indicated that electromagnetic radiation affects the abovementioned protein synthesis or translation, and this could affect the function of PSII Cytb559, the PSII cycle of electron flow and oxidation and reduction potential, and the function of cytochrome c-550. Therefore, the electromagnetic radiation will affect the light reaction processes of M. aeruginosa. In addition, the expression levels of two proteins in ATP synthase were down-regulated under electromagnetic radiation. ATP synthase on the thylakoid membrane, also known as H+-ATPase, catalyzed the synthesis process of ATP by ADP and Pi. The pH gradient of the thylakoid membrane, being the driving force of ATP synthesis and phosphorylation, can be blocked by killing venturicidin and similar reagents23. Plasma membrane H+-ATPase can function in the mitigation of physiological disturbances imposed by salt stress29. Electromagnetic radiation may affect the photosynthetic phosphorylation by affecting the ATP synthase on the thylakoid cells of M. aeruginosa and thus may affect photosynthetic phosphorylation. Electromagnetic radiation may be one of the reasons that indirectly affect photosynthetic carbon sequestration.

In conclusion, the response of the M. aeruginosa cells to electromagnetic radiation is a complex process, wherein differential expression is significantly enriched in photosynthetic pathways. In addition, the differential proteins are mainly related to inositol phosphate metabolism, oxidative phosphorylation, pantothenate and CoA biosynthesis, homologous recombination, glutathione metabolism, fructose and mannose metabolism, arginine and proline metabolism, carbon fixation in photosynthetic organisms, cysteine and methionine metabolism, porphyrin and chlorophyll metabolism, glycolysis/gluconeogenesis, purine metabolism, carbon metabolism, and biosynthesis of amino acid function. The PSII Cytb559 α subunit, cytochrome c-550, PsbY, and F-type ATP synthase (a, b) protein expression levels decreased. Electromagnetic radiation affects the photosynthesis-related protein synthesis or translation, and could affect the function of photosynthetic pigments, PS II potential activity, photosynthetic electron transport process, and photosynthetic phosphorylation process of M. aeruginosa.

Broadly speaking, visible light is within a certain wavelength range of electromagnetic wave (380–750 nm). Certain differences may exist in the electromagnetic radiation effect sites at different frequencies in the growth processes of M. aeruginosa. Visible light directly acts on the relevant proteins of photosynthetic system, but microwave electromagnetic radiation (1.8 GHz applied in this study) acts on protein synthesis or translation processes.

Based on the above evidence, the photoreaction system may be a target of electromagnetic radiation on the photosynthesis for cyanobacteria; the photoreaction system of cyanobacteria is a hypothetical “shared target effector” that responds to light and electromagnetic radiation; and electromagnetic radiation does not act on the functional proteins themselves but their expression processes. Furthermore, photosynthesis is associated with energy metabolism. Thus, the correlation between electromagnetic radiation and bioenergy metabolism must be further investigated.

Methods

Experimental Materials

The experiment involved species from M. aeruginosa, and the algal species came from the Institute of Aquatic Biology, Chinese Academy of Sciences, No. FACHB-905. Culture temperature was 25 ± 1 °C with 12 L:12 D light–to-dark ratio, the light intensity was 1000 ± 100 Lux, and the culture medium for high pressure sterilization was BG 11 medium.

Experimental exposure device

Radio frequency electromagnetic field (RF-EMF) was generated using a vector signal generator (AgilentE8267DPSG, USA) and a signal amplifier (AV38701E, the 41st Institute of CETC, China). RF-EMF was emitted from an antenna (ETS3180B) that was placed at 24 cm above the sample area. A signal amplifier was used to amplify the RF/MW signal induced by the signal generator. The signal at the sample position was measured using an electromagnetic radiation analyzer (PMM8053B, Narta-STS, Italy) and a signal analyzer (AgilentN9030A). A series of operations was applied to ensure temperature accuracy and stability. First, the temperature probe of the incubator was placed adjacent to the sample so that the incubator would maintain its temperature according to that position. Second, the temperatures of the two incubators for the control and exposure samples were routinely calibrated using the same thermometer. Third, during the exposure periods, the temperature of the sample area was continuously monitored using temperature probes surrounding the control and exposure samples. Fourth, the surface temperature of each sample during the exposure period was checked using a thermal imager (Testo 890). All of the monitoring data showed that the temperature of the control and exposure samples remained stable30. Experimental exposure device was shown in Fig. 2. In this study, M. aeruginosa cells were exposed to 1.8 GHz RF-EMF through a continuous sine wave. At the position of the M. aeruginosa cells, the R F electromagnetic field strength was 40 V/m and the temperature was 25 °C.

An external file that holds a picture, illustration, etc.
Object name is 41598_2017_18953_Fig2_HTML.jpg

Radio frequency electromagnetic field exposure system.

Experimental treatment

M. aeruginosa were cultured in the normal light for 30 days (Culture temperature was 25 ± 1 °C with 12 L:12 D light–to-dark ratio, light intensity was 1000 ± 100 Lux, and the culture medium for high pressure sterilization was BG 11 medium), and were then divided into two parts for exposure and control experiments.

To exclude the impact of light on the experiment, a dark condition was chosen for the experiment. The exposure group was treated with 1.8 GHz and 40 V/m electromagnetic radiation in the dark for 24 hours (based on our previous study result11), whereas the control group was not exposed to electromagnetic radiation and other conditions remained constant.

Experimental roadmap was shown in Fig. 3.

The above treatment was repeated thrice. The control mark was CK and the processing marker was E. Three samples each from the treatment and control groups were sent to GENE DENOVO Company to extract and identify proteins. The protein identification used Orbitrap Fusion Tribrid mass spectrometer by Gene Denovo Biotechnology Co. (Guangzhou, China).

Data analysis

Database search

The mass spectrometry data were transformed into MGF files with Proteome Discovery 1.2 (Thermo, Pittsburgh, PA, USA) and analyzed using Mascot search engine (Matrix Science, London, UK; version 2.3.2). Mascot database was set up for protein identification using M. aeruginosa DIANCHI905 reference transcriptome. Mascot was searched with a fragment ion mass tolerance of 0.050 Da and a parent ion tolerance of 10.0 PPM.

Protein identification and quantification

The Mascot search results were averaged using medians and quantified. Proteins with fold change in a comparison >1.2 or <0.83 and unadjusted significance level p < 0.05 were considered differentially expressed.

Protein functional annotation and enrichment analysis

Proteins were annotated against GO, KEGG and COG/KOG database to obtain their functions. Significant GO functions and pathways were examined within differentially expressed proteins with p value ≤ 0.05.

Data Availability

All data generated or analysed during this study are included in this published article.

Acknowledgements

This work was supported by the Science and Technology Innovation Fund Project, Chinese Academy of Sciences (grant numbers CXJJ-16M115) and the Xiamen Science and Technology Project (grant numbers 3502Z20162021). Thanks for getting copyright permission from Kanehisa Laboratories.

Author Contributions

Conceived and designed the experiments: P.C. and C.T. Performed the experiments: C.T., H.Y., S.T., C.Y., X.H. and W.W. Wrote the paper: C.T. and P.C. Analyzed data and drew pictures: C.T., C.Y. and S.T. All authors reviewed the manuscript.

Notes

Competing Interests

The authors declare that they have no competing interests.

Footnotes

Publisher's note: Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

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