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Select item 110516751.

A vast repertoire of secondary metabolites potentially influences community dynamics and biogeochemical processes in cold seeps

Xiyang Dong, Tianxueyu Zhang, Weichao Wu, Yongyi Peng, Xinyue Liu, Yingchun Han, Xiangwei Chen, Zhizeng Gao, Jinmei Xia, Zongze Shao, Chris Greening

Sci Adv. 2024 Apr 26; 10(17): eadl2281. Published online 2024 Apr 26. doi: 10.1126/sciadv.adl2281

PMCID:: PMC11051675

Article PDF–4.9M

Select item 107876982.

Discovery and biocatalytic characterization of opine dehydrogenases by metagenome mining

András Telek, Zsófia Molnár, Kristóf Takács, Bálint Varga, Vince Grolmusz, Gábor Tasnádi, Beáta G. Vértessy

Appl Microbiol Biotechnol. 2024; 108(1): 101. Published online 2024 Jan 13. doi: 10.1007/s00253-023-12871-z

PMCID:: PMC10787698

Article PDF–2.6M

Select item 107818783.

AMWEst, a new thermostable and detergent-tolerant esterase retrieved from the Albian aquifer

Moussa Adjeroud, Mouloud Kecha, Juan-José Escuder-Rodríguez, Manuel Becerra, María-Isabel González-Siso

Appl Microbiol Biotechnol. 2024; 108(1): 114. Published online 2024 Jan 10. doi: 10.1007/s00253-023-12844-2

PMCID:: PMC10781878

Article PDF–2.3M

Select item 106732334.

Diversity, Taxonomic Novelty, and Encoded Functions of Salar de Ascotán Microbiota, as Revealed by Metagenome-Assembled Genomes

Marcelo Veloso, Angie Waldisperg, Patricio Arros, Camilo Berríos-Pastén, Joaquín Acosta, Hazajem Colque, Macarena A. Varas, Miguel L. Allende, Luis H. Orellana, Andrés E. Marcoleta

Microorganisms. 2023 Nov; 11(11): 2819. Published online 2023 Nov 20. doi: 10.3390/microorganisms11112819

PMCID:: PMC10673233

Article PDF–2.9M

Select item 103783265.

A Metagenome from a Steam Vent in Los Azufres Geothermal Field Shows an Abundance of Thermoplasmatales archaea and Bacteria from the Phyla Actinomycetota and Pseudomonadota

Roberto Marín-Paredes, Hermes H. Bolívar-Torres, Alberto Coronel-Gaytán, Esperanza Martínez-Romero, Luis E. Servín-Garcidueñas

Curr Issues Mol Biol. 2023 Jul; 45(7): 5849–5864. Published online 2023 Jul 13. doi: 10.3390/cimb45070370

PMCID:: PMC10378326

Article PDF–3.9M

Select item 99484716.

A novel and diverse group of Candidatus Patescibacteria from bathypelagic Lake Baikal revealed through long-read metagenomics

Jose M. Haro-Moreno, Pedro J. Cabello-Yeves, M. Pilar Garcillán-Barcia, Alexandra Zakharenko, Tamara I. Zemskaya, Francisco Rodriguez-Valera

Environ Microbiome. 2023; 18: 12. Published online 2023 Feb 23. doi: 10.1186/s40793-023-00473-1

PMCID:: PMC9948471

Article PDF–2.3M

Select item 98741627.

Metagenomics reveals biogeochemical processes carried out by sediment microbial communities in a shallow eutrophic freshwater lake

Bo Kuang, Rong Xiao, Yanping Hu, Yaping Wang, Ling Zhang, Zhuoqun Wei, Junhong Bai, Kegang Zhang, Jacquelinne J. Acuña, Milko A. Jorquera, Wenbin Pan

Front Microbiol. 2022; 13: 1112669. Published online 2023 Jan 11. doi: 10.3389/fmicb.2022.1112669

PMCID:: PMC9874162

Article PDF–1.8M

Select item 97512928.

Chlorine redox chemistry is widespread in microbiology

Tyler P. Barnum, John D. Coates

ISME J. 2023 Jan; 17(1): 70–83. Published online 2022 Oct 6. doi: 10.1038/s41396-022-01317-5

PMCID:: PMC9751292

Article PDF–7.1M

Select item 95837769.

Metagenome-Assembled Genome of Acidibrevibacterium fodinaquatile FLA01 from Fumarole Sediments from the Los Azufres Geothermal Field

Hermes H. Bolivar-Torres, Roberto Marín-Paredes, Cristal Ramos-Madrigal, Luis E. Servín-Garcidueñas

Microbiol Resour Announc. 2022 Oct; 11(10): e00823-22. Published online 2022 Oct 3. doi: 10.1128/mra.00823-22

PMCID:: PMC9583776

Article PDF–127K

Select item 938614710.

Genome analysis of the candidate phylum MBNT15 bacterium from a boreal peatland predicted its respiratory versatility and dissimilatory iron metabolism

Shahjahon Begmatov, Alexey V. Beletsky, Svetlana N. Dedysh, Andrey V. Mardanov, Nikolai V. Ravin

Front Microbiol. 2022; 13: 951761. Published online 2022 Aug 4. doi: 10.3389/fmicb.2022.951761

PMCID:: PMC9386147

Article PDF–7.5M

Select item 923010311.

Plastisphere community assemblage of aquatic environment: plastic-microbe interaction, role in degradation and characterization technologies

Sujata Dey, Ajaya Kumar Rout, Bijay Kumar Behera, Koushik Ghosh

Environ Microbiome. 2022; 17: 32. Published online 2022 Jun 24. doi: 10.1186/s40793-022-00430-4

PMCID:: PMC9230103

Article PDF–1.5M

Select item 918919912.

Procedure of the overexpression, purification and crystallization of BLEG-1, a bifunctional and evolutionary divergent B3 metallo-β-lactamase, for structure-function studies

Shaw Xian Au, Noor Dina Muhd Noor, Hiroyoshi Matsumura, Raja Noor Zaliha Raja Abdul Rahman, Yahaya M. Normi

MethodsX. 2022; 9: 101740. Published online 2022 May 27. doi: 10.1016/j.mex.2022.101740

PMCID:: PMC9189199

Article PDF–1.3M

Select item 922544813.

Recent Advances in the Heterologous Expression of Biosynthetic Gene Clusters for Marine Natural Products

Yushan Xu, Xinhua Du, Xionghui Yu, Qian Jiang, Kaiwen Zheng, Jinzhong Xu, Pinmei Wang

Mar Drugs. 2022 Jun; 20(6): 341. Published online 2022 May 24. doi: 10.3390/md20060341

PMCID:: PMC9225448

Article PDF–1.3M

Select item 906176914.

Patterns and ecological drivers of viral communities in acid mine drainage sediments across Southern China

Shaoming Gao, David Paez-Espino, Jintian Li, Hongxia Ai, Jieliang Liang, Zhenhao Luo, Jin Zheng, Hao Chen, Wensheng Shu, Linan Huang

Nat Commun. 2022; 13: 2389. Published online 2022 May 2. doi: 10.1038/s41467-022-30049-5

PMCID:: PMC9061769

Article PDF–6.1M

Select item 949119615.

Class C β-Lactamases: Molecular Characteristics

Alain Philippon, Guillaume Arlet, Roger Labia, Bogdan I. Iorga

Clin Microbiol Rev. 2022 Sep; 35(3): e00150-21. Published online 2022 Apr 18. doi: 10.1128/cmr.00150-21

PMCID:: PMC9491196

Article PDF–2.9M

Select item 901218316.

Phylogeny, distribution and potential metabolism of candidate bacterial phylum KSB1

Qingmei Li, Yingli Zhou, Rui Lu, Pengfei Zheng, Yong Wang

PeerJ. 2022; 10: e13241. Published online 2022 Apr 12. doi: 10.7717/peerj.13241

PMCID:: PMC9012183

Article PDF–10M

Select item 872559517.

Novel Viral Communities Potentially Assisting in Carbon, Nitrogen, and Sulfur Metabolism in the Upper Slope Sediments of Mariana Trench

Jiulong Zhao, Hongmei Jing, Zengmeng Wang, Long Wang, Huahua Jian, Rui Zhang, Xiang Xiao, Feng Chen, Nianzhi Jiao, Yongyu Zhang

mSystems. 2022 Jan-Feb; 7(1): e01358-21. Published online 2022 Jan 4. doi: 10.1128/msystems.01358-21

PMCID:: PMC8725595

Article PDF–2.9M

Select item 903906018.

Dissecting the dominant hot spring microbial populations based on community-wide sampling at single-cell genomic resolution

Robert M. Bowers, Stephen Nayfach, Frederik Schulz, Sean P. Jungbluth, Ilona A. Ruhl, Andriy Sheremet, Janey Lee, Danielle Goudeau, Emiley A. Eloe-Fadrosh, Ramunas Stepanauskas, Rex R. Malmstrom, Nikos C. Kyrpides, Peter F. Dunfield, Tanja Woyke

ISME J. 2022 May; 16(5): 1337–1347. Published online 2021 Dec 30. doi: 10.1038/s41396-021-01178-4

PMCID:: PMC9039060

Article PDF–4.7M

Select item 894095519.

Diverse ecophysiological adaptations of subsurface Thaumarchaeota in floodplain sediments revealed through genome-resolved metagenomics

Linta Reji, Emily L. Cardarelli, Kristin Boye, John R. Bargar, Christopher A. Francis

ISME J. 2022 Apr; 16(4): 1140–1152. Published online 2021 Dec 6. doi: 10.1038/s41396-021-01167-7

PMCID:: PMC8940955

Article PDF–3.8M

Select item 857999520.

Ecological Dichotomies Arise in Microbial Communities Due to Mixing of Deep Hydrothermal Waters and Atmospheric Gas in a Circumneutral Hot Spring

Maria C. Fernandes-Martins, Lisa M. Keller, Mason Munro-Ehrlich, Kathryn R. Zimlich, Madelyn K. Mettler, Alexis M. England, Rita Clare, Kevin Surya, Everett L. Shock, Daniel R. Colman, Eric S. Boyd

Appl Environ Microbiol. 2021 Dec; 87(23): e01598-21. Prepublished online 2021 Sep 29. Published online 2021 Nov 10. doi: 10.1128/AEM.01598-21