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Select item 108064411.

Environmental drivers of Arctic communities based on metabarcoding of marine sediment eDNA

Nathan R. Geraldi, Dorte Krause-Jensen, Sarah B. Ørberg, Larissa Frühe, Mikael K. Sejr, Jørgen L. S. Hansen, Lars Lund-Hansen, Carlos M. Duarte

Proc Biol Sci. 2024 Jan; 291(2015): 20231614. Published online January 24, 2024. doi: 10.1098/rspb.2023.1614

PMCID:: PMC10806441

Article PDF–1.1M

Select item 102323652.

Ancient gene linkages support ctenophores as sister to other animals

Darrin T. Schultz, Steven H. D. Haddock, Jessen V. Bredeson, Richard E. Green, Oleg Simakov, Daniel S. Rokhsar

Nature. 2023; 618(7963): 110–117. Published online 2023 May 17. doi: 10.1038/s41586-023-05936-6

PMCID:: PMC10232365

Article PDF–22M

Select item 100556533.

Evolution of promoter-proximal pausing enabled a new layer of transcription control

Alexandra G. Chivu, Abderhman Abuhashem, Gilad Barshad, Edward J. Rice, Michelle M. Leger, Albert C. Vill, Wilfred Wong, Rebecca Brady, Jeramiah J. Smith, Athula H. Wikramanayake, César Arenas-Mena, Ilana L. Brito, Iñaki Ruiz-Trillo, Anna-Katerina Hadjantonakis, John T. Lis, James J. Lewis, Charles G. Danko

Version 1. Res Sq. Preprint. 2023 Mar 24. doi: 10.21203/rs.3.rs-2679520/v1

PMCID:: PMC10055653

Article PDF–1.0M

Select item 99471204.

Taxonomic composition, community structure and molecular novelty of microeukaryotes in a temperate oligomesotrophic lake as revealed by metabarcoding

Konstantina Mitsi, Daniel J. Richter, Alicia S. Arroyo, David López-Escardó, Meritxell Antó, Antonio Guillén Oterino, Iñaki Ruiz-Trillo

Sci Rep. 2023; 13: 3119. Published online 2023 Feb 22. doi: 10.1038/s41598-023-30228-4

PMCID:: PMC9947120

Article PDF–2.3M

Select item 98464325.

Evolutionary analysis of p38 stress-activated kinases in unicellular relatives of animals suggests an ancestral function in osmotic stress

Victoria Shabardina, Pedro Romero Charria, Gonzalo Bercedo Saborido, Ester Diaz-Mora, Ana Cuenda, Iñaki Ruiz-Trillo, Juan Jose Sanz-Ezquerro

Open Biol. 2023 Jan; 13(1): 220314. Published online January 18, 2023. doi: 10.1098/rsob.220314

PMCID:: PMC9846432

Article PDF–2.0M

Select item 75330666.

Alicia S Arroyo, Romain Lannes, Eric Bapteste, Iñaki Ruiz-Trillo

Genome Biol Evol. 2020 Sep; 12(9): 1664–1678. Published online 2020 Jun 13. doi: 10.1093/gbe/evaa117

Correction in:: Genome Biol Evol. 2021 Aug; 13(8): evab140.

PMCID:: PMC7533066

Article PDF–1.4M

Select item 72139847.

Genetic transformation of Spizellomyces punctatus, a resource for studying chytrid biology and evolutionary cell biology

Edgar M Medina, Kristyn A Robinson, Kimberly Bellingham-Johnstun, Giuseppe Ianiri, Caroline Laplante, Lillian K Fritz-Laylin, Nicolas E Buchler

eLife. 2020; 9: e52741. Published online 2020 May 11. doi: 10.7554/eLife.52741

PMCID:: PMC7213984

Article PDF–4.0M

Select item 69817618.

Characterization of p53 Family Homologs in Evolutionary Remote Branches of Holozoa

Martin Bartas, Václav Brázda, Jiří Červeň, Petr Pečinka

Int J Mol Sci. 2020 Jan; 21(1): 6. Published online 2019 Dec 18. doi: 10.3390/ijms21010006

PMCID:: PMC6981761

Article PDF–7.0M

Select item 68558419.

A unicellular relative of animals generates a layer of polarized cells by actomyosin-dependent cellularization

Omaya Dudin, Andrej Ondracka, Xavier Grau-Bové, Arthur AB Haraldsen, Atsushi Toyoda, Hiroshi Suga, Jon Bråte, Iñaki Ruiz-Trillo

eLife. 2019; 8: e49801. Published online 2019 Oct 28. doi: 10.7554/eLife.49801

Correction in:: eLife. 2020; 9: e60055.

PMCID:: PMC6855841

Article PDF–4.3M

Select item 640042010.

Reticulate evolution in eukaryotes: Origin and evolution of the nitrate assimilation pathway

Eduard Ocaña-Pallarès, Sebastián R. Najle, Claudio Scazzocchio, Iñaki Ruiz-Trillo

PLoS Genet. 2019 Feb; 15(2): e1007986. Published online 2019 Feb 21. doi: 10.1371/journal.pgen.1007986

PMCID:: PMC6400420

Article PDF–4.7M

Select item 649200611.

Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes

Sina M. Adl, David Bass, Christopher E. Lane, Julius Lukeš, Conrad L. Schoch, Alexey Smirnov, Sabine Agatha, Cedric Berney, Matthew W. Brown, Fabien Burki, Paco Cárdenas, Ivan Čepička, Lyudmila Chistyakova, Javier del Campo, Micah Dunthorn, Bente Edvardsen, Yana Eglit, Laure Guillou, Vladimír Hampl, Aaron A. Heiss, Mona Hoppenrath, Timothy Y. James, Anna Karnkowska, Sergey Karpov, Eunsoo Kim, Martin Kolisko, Alexander Kudryavtsev, Daniel J.G. Lahr, Enrique Lara, Line Le Gall, Denis H. Lynn, David G. Mann, Ramon Massana, Edward A.D. Mitchell, Christine Morrow, Jong Soo Park, Jan W. Pawlowski, Martha J. Powell, Daniel J. Richter, Sonja Rueckert, Lora Shadwick, Satoshi Shimano, Frederick W. Spiegel, Guifré Torruella, Noha Youssef, Vasily Zlatogursky, Qianqian Zhang

J Eukaryot Microbiol. 2019 Jan-Feb; 66(1): 4–119. Published online 2019 Jan 19. doi: 10.1111/jeu.12691

PMCID:: PMC6492006

Article PDF–1.5M

Select item 633317412.

Transfection of choanoflagellates illuminates their cell biology and the ancestry of animal septins

David S. Booth, Heather Szmidt-Middleton, Nicole King

Mol Biol Cell. 2018 Dec 1; 29(25): 3026–3038. doi: 10.1091/mbc.E18-08-0514

PMCID:: PMC6333174

Article PDF–2.1M

Select item 620697613.

Unicellular Origin of the Animal MicroRNA Machinery

Jon Bråte, Ralf S. Neumann, Bastian Fromm, Arthur A.B. Haraldsen, James E. Tarver, Hiroshi Suga, Philip C.J. Donoghue, Kevin J. Peterson, Iñaki Ruiz-Trillo, Paul E. Grini, Kamran Shalchian-Tabrizi

Curr Biol. 2018 Oct 22; 28(20): 3288–3295.e5. doi: 10.1016/j.cub.2018.08.018

PMCID:: PMC6206976

Article

Select item 614236414.

Origin of exon skipping-rich transcriptomes in animals driven by evolution of gene architecture

Xavier Grau-Bové, Iñaki Ruiz-Trillo, Manuel Irimia

Genome Biol. 2018; 19: 135. Published online 2018 Sep 17. doi: 10.1186/s13059-018-1499-9

PMCID:: PMC6142364

Article PDF–5.1M

Select item 632825315.

The Src module: an ancient scaffold in the evolution of cytoplasmic tyrosine kinases

Neel H. Shah, Jeanine F. Amacher, Laura M. Nocka, John Kuriyan

Crit Rev Biochem Mol Biol. Author manuscript; available in PMC 2019 Oct 1.

Published in final edited form as: Crit Rev Biochem Mol Biol. 2018 Oct; 53(5): 535–563. Published online 2018 Sep 5. doi: 10.1080/10409238.2018.1495173

PMCID:: PMC6328253

Article PDF–2.4M

Select item 600137816.

Transfection of Capsaspora owczarzaki, a close unicellular relative of animals

Helena Parra-Acero, Núria Ros-Rocher, Alberto Perez-Posada, Aleksandra Kożyczkowska, Núria Sánchez-Pons, Azusa Nakata, Hiroshi Suga, Sebastián R. Najle, Iñaki Ruiz-Trillo

Development. 2018 May 15; 145(10): dev162107. Published online 2018 May 23. doi: 10.1242/dev.162107