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Select item 106484321.

Lactobacillus plantarum Zhang-LL Inhibits Colitis-Related Tumorigenesis by Regulating Arachidonic Acid Metabolism and CD22-Mediated B-Cell Receptor Regulation

Jingxin Zhu, Wenbo Liu, Zheng Bian, Yumeng Ma, Zixin Kang, Junhua Jin, Xiangyang Li, Shaoyang Ge, Yanling Hao, Hongxing Zhang, Yuanhong Xie

Nutrients. 2023 Nov; 15(21): 4512. Published online 2023 Oct 25. doi: 10.3390/nu15214512

PMCID:: PMC10648432

Article PDF–3.0M

Select item 105434762.

Rapid intestinal and systemic metabolic reprogramming in an immunosuppressed environment

Bing Ma, Samuel J. Gavzy, Michael France, Yang Song, Hnin Wai Lwin, Allison Kensiski, Vikas Saxena, Wenji Piao, Ram Lakhan, Jegan Iyyathurai, Lushen Li, Christina Paluskievicz, Long Wu, Marina WillsonShirkey, Emmanuel F. Mongodin, Valeria R. Mas, Jonathan Bromberg

Version 1. Res Sq. Preprint. 2023 Sep 22. doi: 10.21203/rs.3.rs-3364037/v1

Published in:: BMC Microbiol. 2023; 23: 394.

PMCID:: PMC10543476

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Select item 105070203.

Ecophysiology and interactions of a taurine-respiring bacterium in the mouse gut

Huimin Ye, Sabrina Borusak, Claudia Eberl, Julia Krasenbrink, Anna S. Weiss, Song-Can Chen, Buck T. Hanson, Bela Hausmann, Craig W. Herbold, Manuel Pristner, Benjamin Zwirzitz, Benedikt Warth, Petra Pjevac, David Schleheck, Bärbel Stecher, Alexander Loy

Nat Commun. 2023; 14: 5533. Published online 2023 Sep 18. doi: 10.1038/s41467-023-41008-z

PMCID:: PMC10507020

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Select item 101876784.

Computational design and experimental verification of pseudoknotted ribozymes

Sabrine Najeh, Kasra Zandi, Nawwaf Kharma, Jonathan Perreault

RNA. 2023 Jun; 29(6): 764–776. doi: 10.1261/rna.079148.122

PMCID:: PMC10187678

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Select item 101452755.

2′-Fucosyllactose and 3-Fucosyllactose Alleviates Interleukin-6-Induced Barrier Dysfunction and Dextran Sodium Sulfate-Induced Colitis by Improving Intestinal Barrier Function and Modulating the Intestinal Microbiome

Yeon-Ji Kim, Han-Hae Kim, Chul-Soo Shin, Jong-Won Yoon, Seon-Min Jeon, Young-Ha Song, Kwang-Youn Kim, Kyungho Kim

Nutrients. 2023 Apr; 15(8): 1845. Published online 2023 Apr 12. doi: 10.3390/nu15081845

PMCID:: PMC10145275

Article PDF–4.6M

Select item 100299256.

Exploring microbial functional biodiversity at the protein family level—From metagenomic sequence reads to annotated protein clusters

Fotis A. Baltoumas, Evangelos Karatzas, David Paez-Espino, Nefeli K. Venetsianou, Eleni Aplakidou, Anastasis Oulas, Robert D. Finn, Sergey Ovchinnikov, Evangelos Pafilis, Nikos C. Kyrpides, Georgios A. Pavlopoulos

Front Bioinform. 2023; 3: 1157956. Published online 2023 Mar 3. doi: 10.3389/fbinf.2023.1157956

PMCID:: PMC10029925

Article PDF–3.6M

Select item 98524287.

Strain-specific alterations in gut microbiome and host immune responses elicited by tolerogenic Bifidobacterium pseudolongum

Bing Ma, Samuel J. Gavzy, Vikas Saxena, Yang Song, Wenji Piao, Hnin Wai Lwin, Ram Lakhan, Jegan Iyyathurai, Lushen Li, Michael France, Christina Paluskievicz, Marina W. Shirkey, Lauren Hittle, Arshi Munawwar, Emmanuel F. Mongodin, Jonathan S. Bromberg

Sci Rep. 2023; 13: 1023. Published online 2023 Jan 19. doi: 10.1038/s41598-023-27706-0

Correction in:: Sci Rep. 2023; 13: 6628.

PMCID:: PMC9852428

Article PDF–2.4M

Select item 92333368.

Metadata harmonization–Standards are the key for a better usage of omics data for integrative microbiome analysis

Tomislav Cernava, Daria Rybakova, François Buscot, Thomas Clavel, Alice Carolyn McHardy, Fernando Meyer, Folker Meyer, Jörg Overmann, Bärbel Stecher, Angela Sessitsch, Michael Schloter, Gabriele Berg, The MicrobiomeSupport Team

Environ Microbiome. 2022; 17: 33. Published online 2022 Jun 24. doi: 10.1186/s40793-022-00425-1

PMCID:: PMC9233336

Article PDF–1.5M

Select item 91602679.

Fecal microbiota transplantation from patients with rheumatoid arthritis causes depression-like behaviors in mice through abnormal T cells activation

Yaoyu Pu, Qiuping Zhang, Zhigang Tang, Chenyang Lu, Liang Wu, Yutong Zhong, Yuehong Chen, Kenji Hashimoto, Yubin Luo, Yi Liu

Transl Psychiatry. 2022; 12: 223. Published online 2022 Jun 1. doi: 10.1038/s41398-022-01993-z

Correction in:: Transl Psychiatry. 2022; 12: 387.

PMCID:: PMC9160267

Article PDF–3.2M

Select item 894581910.

Mechanistic Insights into Inorganic Nitrite-Mediated Vasodilation of Isolated Aortic Rings under Oxidative/Hypertensive Conditions and S-Nitros(yl)ation of Proteins in Germ-Free Mice

Paul Stamm, Sanela Kalinovic, Matthias Oelze, Sebastian Steven, Alexander Czarnowski, Miroslava Kvandova, Franziska Bayer, Christoph Reinhardt, Thomas Münzel, Andreas Daiber

Biomedicines. 2022 Mar; 10(3): 730. Published online 2022 Mar 21. doi: 10.3390/biomedicines10030730

PMCID:: PMC8945819

Article PDF–1.1M

Select item 876340411.

The Mouse Gastrointestinal Bacteria Catalogue enables translation between the mouse and human gut microbiotas via functional mapping

Benjamin S. Beresford-Jones, Samuel C. Forster, Mark D. Stares, George Notley, Elisa Viciani, Hilary P. Browne, Daniel J. Boehmler, Amelia T. Soderholm, Nitin Kumar, Kevin Vervier, Justin R. Cross, Alexandre Almeida, Trevor D. Lawley, Virginia A. Pedicord

Cell Host Microbe. 2022 Jan 12; 30(1): 124–138.e8. doi: 10.1016/j.chom.2021.12.003

PMCID:: PMC8763404

Article PDF–7.4M

Select item 801155512.

BLUEBERRY POLYPHENOLS ALTER GUT MICROBIOTA & PHENOLIC METABOLISM IN RATS

Dennis P. Cladis, Abigayle M. R. Simpson, Kaitlyn J. Cooper, Cindy H Nakatsu, Mario G. Ferruzzi, Connie M. Weaver

Food Funct. Author manuscript; available in PMC 2022 Mar 21.

Published in final edited form as: Food Funct. 2021 Mar 21; 12(6): 2442–2456. Published online 2021 Feb 25. doi: 10.1039/d0fo03457f

PMCID:: PMC8011555

Article PDF–492K

Select item 854489313.

An Expanded Gene Catalog of Mouse Gut Metagenomes

Jiahui Zhu, Huahui Ren, Huanzi Zhong, Xiaoping Li, Yuanqiang Zou, Mo Han, Minli Li, Lise Madsen, Karsten Kristiansen, Liang Xiao

mSphere. 2021 Jan-Feb; 6(1): e01119-20. Published online 2021 Feb 24. doi: 10.1128/mSphere.01119-20

PMCID:: PMC8544893

Article PDF–5.2M

Select item 766025714.

Analysis of the diversity of the glycoside hydrolase family 130 in mammal gut microbiomes reveals a novel mannoside-phosphorylase function

Ao Li, Elisabeth Laville, Laurence Tarquis, Vincent Lombard, David Ropartz, Nicolas Terrapon, Bernard Henrissat, David Guieysse, Jeremy Esque, Julien Durand, Diego P. Morgavi, Gabrielle Potocki-Veronese

Microb Genom. 2020 Oct; 6(10): mgen000404. Published online 2020 Jul 15. doi: 10.1099/mgen.0.000404

PMCID:: PMC7660257

Article PDF–2.1M

Select item 779074615.

Perturbation of the gut microbiome by Prevotella spp. enhances host susceptibility to mucosal inflammation

Aida Iljazovic, Urmi Roy, Eric J. C. Gálvez, Till R. Lesker, Bei Zhao, Achim Gronow, Lena Amend, Sabine E. Will, Julia D. Hofmann, Marina C. Pils, Kerstin Schmidt-Hohagen, Meina Neumann-Schaal, Till Strowig

Mucosal Immunol. 2021; 14(1): 113–124. Published online 2020 May 20. doi: 10.1038/s41385-020-0296-4

PMCID:: PMC7790746

Article PDF–4.3M

Select item 715054216.

Deconvolute individual genomes from metagenome sequences through short read clustering

Kexue Li, Yakang Lu, Li Deng, Lili Wang, Lizhen Shi, Zhong Wang

PeerJ. 2020; 8: e8966. Published online 2020 Apr 8. doi: 10.7717/peerj.8966

PMCID:: PMC7150542

Article PDF–1.8M

Select item 715160717.

Single Mutation in Hammerhead Ribozyme Favors Cleavage Activity with Manganese over Magnesium

Mohammad Reza Naghdi, Emilie Boutet, Clarisse Mucha, Jonathan Ouellet, Jonathan Perreault

Noncoding RNA. 2020 Mar; 6(1): 14. Published online 2020 Mar 20. doi: 10.3390/ncrna6010014

PMCID:: PMC7151607

Article PDF–2.4M

Select item 671227818.

Mouse Gut Microbiome-Encoded β-Glucuronidases Identified Using Metagenome Analysis Guided by Protein Structure

Benjamin C. Creekmore, Josh H. Gray, William G. Walton, Kristen A. Biernat, Michael S. Little, Yongmei Xu, Jian Liu, Raad Z. Gharaibeh, Matthew R. Redinbo

mSystems. 2019 Jul-Aug; 4(4): e00452-19. Published online 2019 Aug 27. doi: 10.1128/mSystems.00452-19