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Items: 1 to 20 of 799

1.
DeepMicroClass sorts metagenomic contigs into prokaryotes, eukaryotes and viruses
Shengwei Hou, Tianqi Tang, Siliangyu Cheng, Yuanhao Liu, Tian Xia, Ting Chen, Jed A Fuhrman, Fengzhu Sun
NAR Genom Bioinform. 2024 Jun; 6(2): lqae044. Published online 2024 May 6. doi: 10.1093/nargab/lqae044
PMCID:
PMC11071121
ArticlePDF–1.9M
2.
18S rDNA sequence-structure phylogeny of the eukaryotes simultaneously inferred from sequences and their individual secondary structures
Eva Rapp, Matthias Wolf
BMC Res Notes. 2024; 17: 124. Published online 2024 May 1. doi: 10.1186/s13104-024-06786-9
PMCID:
PMC11064340
ArticlePDF–1.2M
3.
Complete Mitochondrial Genome and Its Phylogenetic Position in Red Algae Fushitsunagia catenata from South Korea
Maheshkumar Prakash Patil, Nur Indradewi Oktavitri, Young-Ryun Kim, Seokjin Yoon, In-Cheol Lee, Jong-Oh Kim, Kyunghoi Kim
Life (Basel) 2024 Apr; 14(4): 534. Published online 2024 Apr 22. doi: 10.3390/life14040534
PMCID:
PMC11050817
ArticlePDF–1.2M
4.
The Evolutionary Origins and Ancestral Features of Septins
Samed Delic, Brent Shuman, Shoken Lee, Shirin Bahmanyar, Michelle Momany, Masayuki Onishi
Version 1. bioRxiv. Preprint. 2024 Mar 27. doi: 10.1101/2024.03.25.586683
Published in:
Front Cell Dev Biol. 2024; 12: 1406966.
PMCID:
PMC10996617
ArticlePDF–8.6M
5.
Identification of plants’ functional counterpart of the metazoan mediator of DNA Damage checkpoint 1
Zdravko J Lorković, Michael Klingenbrunner, Chung Hyun Cho, Frédéric Berger
EMBO Rep. 2024 Apr; 25(4): 1936–1961. Published online 2024 Mar 4. doi: 10.1038/s44319-024-00107-8
PMCID:
PMC11014961
ArticlePDF–4.8M
6.
Microeukaryotic plankton evolutionary constraints in a subtropical river explained by environment and bacteria along differing taxonomic resolutions
Kexin Ren, Yuanyuan Mo, Peng Xiao, Regin Rønn, Zijie Xu, Yuanyuan Xue, Huihuang Chen, Windell L Rivera, Christopher Rensing, Jun Yang
ISME Commun. 2024 Jan; 4(1): ycae026. Published online 2024 Feb 24. doi: 10.1093/ismeco/ycae026
PMCID:
PMC10980835
ArticlePDF–1.1M
7.
Evolutionary trajectory of pattern recognition receptors in plants
Bruno Pok Man Ngou, Michele Wyler, Marc W. Schmid, Yasuhiro Kadota, Ken Shirasu
Nat Commun. 2024; 15: 308. Published online 2024 Feb 1. doi: 10.1038/s41467-023-44408-3
PMCID:
PMC10834447
ArticlePDF–7.5M
8.
Hypothetical chloroplast reading frame 51 encodes a photosystem I assembly factor in cyanobacteria
Guo-Zheng Dai, Wei-Yu Song, Hai-Feng Xu, Miao Tu, Chen Yu, Zheng-Ke Li, Jin-Long Shang, Chun-Lei Jin, Chao-Shun Ding, Ling-Zi Zuo, Yan-Ru Liu, Wei-Wei Yan, Sha-Sha Zang, Ke Liu, Zheng Zhang, Ralph Bock, Bao-Sheng Qiu
Plant Cell. 2024 May; 36(5): 1844–1867. Published online 2023 Dec 26. doi: 10.1093/plcell/koad330
PMCID:
PMC11062458
ArticlePDF–7.0M
9.
Functional Prokaryotic-Like Deoxycytidine Triphosphate Deaminases and Thymidylate Synthase in Eukaryotic Social Amoebae: Vertical, Endosymbiotic, or Horizontal Gene Transfer?
Heng Liang, Jeffrey P Mower, Catherine P Chia
Mol Biol Evol. 2023 Dec; 40(12): msad268. Published online 2023 Dec 8. doi: 10.1093/molbev/msad268
PMCID:
PMC10733785
ArticlePDF–2.5M
10.
The divergent ER-mitochondria encounter structures (ERMES) are conserved in parabasalids but lost in several anaerobic lineages with hydrogenosomes
Jitka Kučerová, Alois Zdrha, Abhishek Shinde, Karel Harant, Ivan Hrdý, Jan Tachezy
BMC Biol. 2023; 21: 259. Published online 2023 Nov 15. doi: 10.1186/s12915-023-01765-1
PMCID:
PMC10648710
ArticlePDF–4.6M
11.
Uncoupled evolution of the Polycomb system and deep origin of non-canonical PRC1
Bastiaan de Potter, Maximilian W. D. Raas, Michael F. Seidl, C. Peter Verrijzer, Berend Snel
Commun Biol. 2023; 6: 1144. Published online 2023 Nov 10. doi: 10.1038/s42003-023-05501-x
PMCID:
PMC10638273
ArticlePDF–2.3M
12.
Components of iron–Sulfur cluster assembly machineries are robust phylogenetic markers to trace the origin of mitochondria and plastids
Pierre Simon Garcia, Frédéric Barras, Simonetta Gribaldo
PLoS Biol. 2023 Nov; 21(11): e3002374. Published online 2023 Nov 8. doi: 10.1371/journal.pbio.3002374
PMCID:
PMC10631705
ArticlePDF–3.6M
13.
Genome-Wide Identification and Analysis of MYB Transcription Factors in Pyropia yezoensis
Xinzi Yu, Lei Tang, Xianghai Tang, Yunxiang Mao
Plants (Basel) 2023 Oct; 12(20): 3613. Published online 2023 Oct 19. doi: 10.3390/plants12203613
PMCID:
PMC10609806
ArticlePDF–5.3M
14.
Generation and physiological characterization of genome-edited Nicotiana benthamiana plants containing zeaxanthin as the only leaf xanthophyll
Maria Sulli, Luca Dall’Osto, Paola Ferrante, Zeno Guardini, Rodrigo Lionel Gomez, Paola Mini, Olivia Costantina Demurtas, Giuseppe Aprea, Alessandro Nicolia, Roberto Bassi, Giovanni Giuliano
Planta. 2023; 258(5): 93. Published online 2023 Oct 5. doi: 10.1007/s00425-023-04248-3
PMCID:
PMC10556183
ArticlePDF–1.8M
15.
GTPase Era at the heart of ribosome assembly
Christelle Gruffaz, Alexandre Smirnov
Front Mol Biosci. 2023; 10: 1263433. Published online 2023 Oct 4. doi: 10.3389/fmolb.2023.1263433
PMCID:
PMC10582724
ArticlePDF–3.4M
16.
Phylotranscriptomics unveil a Paleoproterozoic-Mesoproterozoic origin and deep relationships of the Viridiplantae
Zhiping Yang, Xiaoya Ma, Qiuping Wang, Xiaolin Tian, Jingyan Sun, Zhenhua Zhang, Shuhai Xiao, Olivier De Clerck, Frederik Leliaert, Bojian Zhong
Nat Commun. 2023; 14: 5542. Published online 2023 Sep 11. doi: 10.1038/s41467-023-41137-5
PMCID:
PMC10495350
ArticlePDF–1.2M
17.
Bioinformatics Analysis of MSH1 Genes of Green Plants: Multiple Parallel Length Expansions, Intron Gains and Losses, Partial Gene Duplications, and Alternative Splicing
Ming-Zhu Bai, Yan-Yan Guo
Int J Mol Sci. 2023 Sep; 24(17): 13620. Published online 2023 Sep 3. doi: 10.3390/ijms241713620
PMCID:
PMC10487979
ArticlePDF–4.6M
18.
Updated Phylogeny and Protein Structure Predictions Revise the Hypothesis on the Origin of MADS-box Transcription Factors in Land Plants
Yichun Qiu, Zhen Li, Dirk Walther, Claudia Köhler
Mol Biol Evol. 2023 Sep; 40(9): msad194. Published online 2023 Aug 31. doi: 10.1093/molbev/msad194
PMCID:
PMC10484287
ArticlePDF–1.2M
19.
Plant GARDEN: a portal website for cross-searching between different types of genomic and genetic resources in a wide variety of plant species
Hisako Ichihara, Manabu Yamada, Mitsuyo Kohara, Hideki Hirakawa, Andrea Ghelfi, Takuro Tamura, Akihiro Nakaya, Yasukazu Nakamura, Sachiko Shirasawa, Samatchaya Yamashita, Yosuke Toda, Daijiro Harada, Tsunakazu Fujishiro, Akiko Komaki, Jeffrey A. Fawcett, Eiji Sugihara, Satoshi Tabata, Sachiko N. Isobe
BMC Plant Biol. 2023; 23: 391. Published online 2023 Aug 12. doi: 10.1186/s12870-023-04392-8
PMCID:
PMC10422841
ArticlePDF–1.5M
20.
An RFX transcription factor regulates ciliogenesis in the closest living relatives of animals
Maxwell C. Coyle, Adia M. Tajima, Fredrick Leon, Semil P. Choksi, Ally Yang, Sarah Espinoza, Timothy R. Hughes, Jeremy F. Reiter, David S. Booth, Nicole King
Curr Biol. Author manuscript; available in PMC 2023 Sep 27.
Published in final edited form as: Curr Biol. 2023 Sep 11; 33(17): 3747–3758.e9. Published online 2023 Aug 7. doi: 10.1016/j.cub.2023.07.022
PMCID:
PMC10530576
ArticlePDF–1.9M

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