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Select item 110096701.

A region of suppressed recombination misleads neoavian phylogenomics

Siavash Mirarab, Iker Rivas-González, Shaohong Feng, Josefin Stiller, Qi Fang, Uyen Mai, Glenn Hickey, Guangji Chen, Nadolina Brajuka, Olivier Fedrigo, Giulio Formenti, Jochen B. W. Wolf, Kerstin Howe, Agostinho Antunes, Mikkel H. Schierup, Benedict Paten, Erich D. Jarvis, Guojie Zhang, Edward L. Braun

Proc Natl Acad Sci U S A. 2024 Apr 9; 121(15): e2319506121. Published online 2024 Apr 1. doi: 10.1073/pnas.2319506121

PMCID:: PMC11009670

Article PDF–15M

Select item 105927832.

Assembly and annotation of two high-quality columbid reference genomes from sequencing of a Columba livia x Columba guinea F₁ hybrid

Emily T. Maclary, Carson Holt, Gregory T. Concepcion, Ivan Sović, Anna I. Vickrey, Mark Yandell, Zev Kronenberg, Michael D. Shapiro

Version 1. bioRxiv. Preprint. 2023 Oct 14. doi: 10.1101/2023.10.11.561892

Published in:: G3 (Bethesda). 2024 Feb; 14(2): jkad280.

PMCID:: PMC10592783

Article PDF–816K

Select item 88933153.

Reconstructing Macroevolutionary Patterns in Avian MHC Architecture With Genomic Data

Ke He, Chun-hong Liang, Ying Zhu, Peter Dunn, Ayong Zhao, Piotr Minias

Front Genet. 2022; 13: 823686. Published online 2022 Feb 17. doi: 10.3389/fgene.2022.823686

PMCID:: PMC8893315

Article PDF–1.7M

Select item 78750004.

Long-Read Genome Assemblies Reveal Extraordinary Variation in the Number and Structure of MHC Loci in Birds

Ke He, Piotr Minias, Peter O Dunn

Genome Biol Evol. 2021 Feb; 13(2): evaa270. Published online 2020 Dec 26. doi: 10.1093/gbe/evaa270

PMCID:: PMC7875000

Article PDF–1.0M

Select item 61319645.

Changes in the appendicular skeleton during metamorphosis in the axolotl salamander (Ambystoma mexicanum)

Parvathy Thampi, Jinpeng Liu, Zheng Zeng, James N. MacLeod

J Anat. 2018 Oct; 233(4): 468–477. Published online 2018 Jul 10. doi: 10.1111/joa.12846

PMCID:: PMC6131964

Article PDF–486K

Select item 46734956.

Gekko japonicus genome reveals evolution of adhesive toe pads and tail regeneration

Yan Liu, Qian Zhou, Yongjun Wang, Longhai Luo, Jian Yang, Linfeng Yang, Mei Liu, Yingrui Li, Tianmei Qian, Yuan Zheng, Meiyuan Li, Jiang Li, Yun Gu, Zujing Han, Man Xu, Yingjie Wang, Changlai Zhu, Bin Yu, Yumin Yang, Fei Ding, Jianping Jiang, Huanming Yang, Xiaosong Gu

Nat Commun. 2015; 6: 10033. Published online 2015 Nov 24. doi: 10.1038/ncomms10033

PMCID:: PMC4673495

Article PDF–2.4M

Select item 45952377.

Gene loss, adaptive evolution and the co-evolution of plumage coloration genes with opsins in birds

Rui Borges, Imran Khan, Warren E. Johnson, M. Thomas P. Gilbert, Guojie Zhang, Erich D. Jarvis, Stephen J. O’Brien, Agostinho Antunes

BMC Genomics. 2015; 16: 751. Published online 2015 Oct 6. doi: 10.1186/s12864-015-1924-3

PMCID:: PMC4595237

Article PDF–1.2M

Select item 45710638.

Evolution of the avian β-defensin and cathelicidin genes

Yuanyuan Cheng, Michael Dennis Prickett, Weronika Gutowska, Richard Kuo, Katherine Belov, David W. Burt

BMC Evol Biol. 2015; 15: 188. Published online 2015 Sep 15. doi: 10.1186/s12862-015-0465-3

PMCID:: PMC4571063

Article PDF–2.2M

Select item 58372909.

The Genome 10K Project: A Way Forward

Klaus-Peter Koepfli, Benedict Paten, the Genome 10K Community of Scientists, Stephen J. O’Brien

Annu Rev Anim Biosci. Author manuscript; available in PMC 2018 Mar 5.

Published in final edited form as: Annu Rev Anim Biosci. 2015; 3: 57–111. doi: 10.1146/annurev-animal-090414-014900

PMCID:: PMC5837290

Article PDF–883K

Select item 18435410.

Inter-familial relationships of the shorebirds (Aves: Charadriiformes) based on nuclear DNA sequence data

Per GP Ericson, Ida Envall, Martin Irestedt, Janette A Norman

BMC Evol Biol. 2003; 3: 16. Published online 2003 Jul 23. doi: 10.1186/1471-2148-3-16

PMCID:: PMC184354

Article PDF–470K

Select item 1098759511.

Archaeological and molecular evidence for ancient chickens in Central Asia

Carli Peters, Kristine K. Richter, Shevan Wilkin, Sören Stark, Basira Mir-Makhamad, Ricardo Fernandes, Farhod Maksudov, Sirojidin Mirzaakhmedov, Husniddin Rahmonov, Stefanie Schirmer, Kseniia Ashastina, Alisher Begmatov, Michael Frachetti, Sharof Kurbanov, Michael Shenkar, Taylor Hermes, Fiona Kidd, Andrey Omelchenko, Barbara Huber, Nicole Boivin, Shujing Wang, Pavel Lurje, Madelynn von Baeyer, Rita Dal Martello, Robert N. Spengler, III

Nat Commun. 2024; 15: 2697. Published online 2024 Apr 2. doi: 10.1038/s41467-024-46093-2

PMCID:: PMC10987595

Article PDF–8.7M

Select item 1084936312.

Assembly and annotation of 2 high-quality columbid reference genomes from sequencing of a Columba livia × Columba guinea F₁ hybrid

Emily T Maclary, Carson Holt, Gregory T Concepcion, Ivan Sović, Anna I Vickrey, Mark Yandell, Zev Kronenberg, Michael D Shapiro

G3 (Bethesda) 2024 Feb; 14(2): jkad280. Published online 2023 Dec 8. doi: 10.1093/g3journal/jkad280

PMCID:: PMC10849363

Article PDF–552K

Select item 1076672213.

In-house validation of an LC–MS method for the multiplexed quantitative determination of total allergenic food in chocolate

Rosa Pilolli, Antonella Lamonaca, Chiara Nitride, Elisabetta De Angelis, Christof van Poucke, Nathalie Gillard, Anne-Catherine Huet, Marc De Loose, Jean Henrottin, E. C. N. Mills, Linda Monaci

Anal Bioanal Chem. 2024; 416(3): 809–825. Published online 2023 Aug 24. doi: 10.1007/s00216-023-04894-2