txid1237874[Organism:exp] - PMC

Select item 99980351.

Increased Sampling and Intracomplex Homologies Favor Vertical Over Horizontal Inheritance of the Dam1 Complex

Laura E van Rooijen, Eelco C Tromer, Jolien J E van Hooff, Geert J P L Kops, Berend Snel

Genome Biol Evol. 2023 Mar; 15(3): evad017. Published online 2023 Feb 15. doi: 10.1093/gbe/evad017

Correction in:: Genome Biol Evol. 2024 Apr; 16(4): evae072.

PMCID:: PMC9998035

Article PDF–5.9M

Select item 101838292.

Shuffled ATG8 interacting motifs form an ancestral bridge between UFMylation and autophagy

Lorenzo Picchianti, Víctor Sánchez de Medina Hernández, Ni Zhan, Nicholas AT Irwin, Roan Groh, Madlen Stephani, Harald Hornegger, Rebecca Beveridge, Justyna Sawa‐Makarska, Thomas Lendl, Nenad Grujic, Christin Naumann, Sascha Martens, Thomas A Richards, Tim Clausen, Silvia Ramundo, G Elif Karagöz, Yasin Dagdas

EMBO J. 2023 May; 42(10): e112053. Published online 2023 Feb 10. doi: 10.15252/embj.2022112053

PMCID:: PMC10183829

Article PDF–3.3M

Select item 92503593.

Phylogenetic profiling and cellular analyses of ARL16 reveal roles in traffic of IFT140 and INPP5E

Skylar I. Dewees, Romana Vargová, Katherine R. Hardin, Rachel E. Turn, Saroja Devi, Joshua Linnert, Uwe Wolfrum, Tamara Caspary, Marek Eliáš, Richard A. Kahn

Mol Biol Cell. 2022 Apr 1; 33(4): ar33. Published online 2022 Mar 17. doi: 10.1091/mbc.E21-10-0509-T

PMCID:: PMC9250359

Article PDF–3.1M

Select item 90103564.

Ciliary transition zone evolution and the root of the eukaryote tree: implications for opisthokont origin and classification of kingdoms Protozoa, Plantae, and Fungi

Thomas Cavalier-Smith

Protoplasma. 2022; 259(3): 487–593. Published online 2021 Dec 23. doi: 10.1007/s00709-021-01665-7

PMCID:: PMC9010356

Article PDF–26M

Select item 64920065.

Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes

Sina M. Adl, David Bass, Christopher E. Lane, Julius Lukeš, Conrad L. Schoch, Alexey Smirnov, Sabine Agatha, Cedric Berney, Matthew W. Brown, Fabien Burki, Paco Cárdenas, Ivan Čepička, Lyudmila Chistyakova, Javier del Campo, Micah Dunthorn, Bente Edvardsen, Yana Eglit, Laure Guillou, Vladimír Hampl, Aaron A. Heiss, Mona Hoppenrath, Timothy Y. James, Anna Karnkowska, Sergey Karpov, Eunsoo Kim, Martin Kolisko, Alexander Kudryavtsev, Daniel J.G. Lahr, Enrique Lara, Line Le Gall, Denis H. Lynn, David G. Mann, Ramon Massana, Edward A.D. Mitchell, Christine Morrow, Jong Soo Park, Jan W. Pawlowski, Martha J. Powell, Daniel J. Richter, Sonja Rueckert, Lora Shadwick, Satoshi Shimano, Frederick W. Spiegel, Guifré Torruella, Noha Youssef, Vasily Zlatogursky, Qianqian Zhang

J Eukaryot Microbiol. 2019 Jan-Feb; 66(1): 4–119. Published online 2019 Jan 19. doi: 10.1111/jeu.12691

PMCID:: PMC6492006

Article PDF–1.5M

Select item 60526326.

Enigmatic Diphyllatea eukaryotes: culturing and targeted PacBio RS amplicon sequencing reveals a higher order taxonomic diversity and global distribution

Russell J. S. Orr, Sen Zhao, Dag Klaveness, Akinori Yabuki, Keiji Ikeda, Watanabe M. Makoto, Kamran Shalchian-Tabrizi

BMC Evol Biol. 2018; 18: 115. Published online 2018 Jul 18. doi: 10.1186/s12862-018-1224-z

Correction in:: BMC Evol Biol. 2018; 18: 118.

PMCID:: PMC6052632

Article PDF–1.1M

Select item 34838727.

The revised classification of eukaryotes

Sina M. Adl, Alastair. G. Simpson, Christopher E. Lane, Julius Lukeš, David Bass, Samuel S. Bowser, Matt Brown, Fabien Burki, Micah Dunthorn, Vladimir Hampl, Aaron Heiss, Mona Hoppenrath, Enrique Lara, Line leGall, Denis H. Lynn, Hilary McManus, Edward A. D. Mitchell, Sharon E. Mozley-Stanridge, Laura Wegener Parfrey, Jan Pawlowski, Sonja Rueckert, Lora Shadwick, Conrad Schoch, Alexey Smirnov, Frederick W. Spiegel

J Eukaryot Microbiol. Author manuscript; available in PMC 2013 Sep 1.

Published in final edited form as: J Eukaryot Microbiol. 2012 Sep; 59(5): 429–493. doi: 10.1111/j.1550-7408.2012.00644.x

Correction in:: volume 60 on page 321

PMCID:: PMC3483872

Article PDF–1.0M

Select item 104928468.

One high quality genome and two transcriptome datasets for new species of Mantamonas, a deep-branching eukaryote clade

Jazmin Blaz, Luis Javier Galindo, Aaron A. Heiss, Harpreet Kaur, Guifré Torruella, Ashley Yang, L. Alexa Thompson, Alexander Filbert, Sally Warring, Apurva Narechania, Takashi Shiratori, Ken-ichiro Ishida, Joel B. Dacks, Purificación López-García, David Moreira, Eunsoo Kim, Laura Eme

Sci Data. 2023; 10: 603. Published online 2023 Sep 9. doi: 10.1038/s41597-023-02488-2

PMCID:: PMC10492846

Article PDF–3.1M

Select item 93666299.

Phylogenomic Analyses of 2,786 Genes in 158 Lineages Support a Root of the Eukaryotic Tree of Life between Opisthokonts and All Other Lineages

Mario A Cerón-Romero, Miguel M Fonseca, Leonardo de Oliveira Martins, David Posada, Laura A Katz

Genome Biol Evol. 2022 Aug; 14(8): evac119. Published online 2022 Jul 26. doi: 10.1093/gbe/evac119

PMCID:: PMC9366629

Article PDF–322K

Select item 866567710.

Ubiquity and Origins of Structural Maintenance of Chromosomes (SMC) Proteins in Eukaryotes

Mari Yoshinaga, Yuji Inagaki

Genome Biol Evol. 2021 Dec; 13(12): evab256. Published online 2021 Nov 19. doi: 10.1093/gbe/evab256

PMCID:: PMC8665677

Article PDF–835K

Select item 702848311.

Phytochrome Evolution in 3D: Deletion, Duplication, and Diversification

Nathan C. Rockwell, J. Clark Lagarias

New Phytol. Author manuscript; available in PMC 2021 Mar 1.

Published in final edited form as: New Phytol. 2020 Mar; 225(6): 2283–2300. Published online 2019 Nov 2. doi: 10.1111/nph.16240

PMCID:: PMC7028483

Article PDF–1.6M

Select item 613309012.

Multigene phylogeny and cell evolution of chromist infrakingdom Rhizaria: contrasting cell organisation of sister phyla Cercozoa and Retaria

Thomas Cavalier-Smith, Ema E. Chao, Rhodri Lewis

Protoplasma. 2018; 255(5): 1517–1574. Published online 2018 Apr 17. doi: 10.1007/s00709-018-1241-1

PMCID:: PMC6133090

Article PDF–7.4M

Select item 579381313.

Phylogenomics Places Orphan Protistan Lineages in a Novel Eukaryotic Super-Group

Matthew W Brown, Aaron A Heiss, Ryoma Kamikawa, Yuji Inagaki, Akinori Yabuki, Alexander K Tice, Takashi Shiratori, Ken-Ichiro Ishida, Tetsuo Hashimoto, Alastair G B Simpson, Andrew J Roger

Genome Biol Evol. 2018 Feb; 10(2): 427–433. Published online 2018 Jan 19. doi: 10.1093/gbe/evy014

PMCID:: PMC5793813

Article PDF–455K

Select item 398217414.

Palpitomonas bilix represents a basal cryptist lineage: insight into the character evolution in Cryptista

Akinori Yabuki, Ryoma Kamikawa, Sohta A. Ishikawa, Martin Kolisko, Eunsoo Kim, Akifumi S. Tanabe, Keitaro Kume, Ken-ichiro Ishida, Yuji Inagki

Sci Rep. 2014; 4: 4641. Published online 2014 Apr 10. doi: 10.1038/srep04641

PMCID:: PMC3982174

Article PDF–916K

Select item 376831715.

Phylogenomics demonstrates that breviate flagellates are related to opisthokonts and apusomonads

Matthew W. Brown, Susan C. Sharpe, Jeffrey D. Silberman, Aaron A. Heiss, B. Franz Lang, Alastair G. B. Simpson, Andrew J. Roger

Proc Biol Sci. 2013 Oct 22; 280(1769): 20131755. doi: 10.1098/rspb.2013.1755

PMCID:: PMC3768317

Article PDF–1.1M

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