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Items: 1 to 20 of 3820624

1.
Systematic analysis of differential rhythmic liver gene expression mediated by the circadian clock and feeding rhythms
Benjamin D. Weger, Cédric Gobet, Fabrice P. A. David, Florian Atger, Eva Martin, Nicholas E. Phillips, Aline Charpagne, Meltem Weger, Felix Naef, Frédéric Gachon
Proc Natl Acad Sci U S A. 2021 Jan 19; 118(3): e2015803118. Published online 2021 Jan 15. doi: 10.1073/pnas.2015803118
PMCID:
PMC7826335
ArticlePDF–5.8M
2.
Benchmarking macaque brain gene expression for horizontal and vertical translation
Andrea I. Luppi, Zhen-Qi Liu, Justine Y. Hansen, Rodrigo Cofre, Meiqi Niu, Elena Kuzmin, Seán Froudist-Walsh, Nicola Palomero-Gallagher, Bratislav Misic
Sci Adv. 2025 Feb 28; 11(9): eads6967. Published online 2025 Feb 28. doi: 10.1126/sciadv.ads6967
PMCID:
PMC11870082
ArticlePDF–6.3M
3.
Widespread sex-dimorphism across single-cell transcriptomes of adult African turquoise killifish tissues
Bryan B. Teefy, Aaron J.J. Lemus, Ari Adler, Alan Xu, Rajyk Bhala, Katelyn Hsu, Bérénice A. Benayoun
Cell Rep. Author manuscript; available in PMC 2024 Feb 5.
Published in final edited form as: Cell Rep. 2023 Oct 31; 42(10): 113237. Published online 2023 Oct 12. doi: 10.1016/j.celrep.2023.113237
PMCID:
PMC10842523
ArticlePDF–2.9M
4.
Targeted gene expression profiling predicts meningioma outcomes and radiotherapy responses
William C. Chen, Abrar Choudhury, Mark W. Youngblood, Mei-Yin C. Polley, Calixto-Hope G. Lucas, Kanish Mirchia, Sybren L.N. Maas, Abigail K. Suwala, Minhee Won, James C. Bayley, Akdes S. Harmanci, Arif Harmanci, Tiemo J. Klisch, Minh P. Nguyen, Harish N. Vasudevan, Kathleen McCortney, Theresa J. Yu, Varun Bhave, Tai-Chung Lam, Jenny Kan-Suen Pu, Lai-Fung Li, Gilberto Ka-Kit Leung, Jason W. Chan, Haley K. Perlow, Joshua D. Palmer, Christine Haberler, Anna S. Berghoff, Matthias Preusser, Theodore P. Nicolaides, Christian Mawrin, Sameer Agnihotri, Adam Resnick, Brian R. Rood, Jessica Chew, Jacob S. Young, Lauren Boreta, Steve E. Braunstein, Jessica Schulte, Nicholas Butowski, Sandro Santagata, David Spetzler, Nancy Ann Oberheim Bush, Javier E. Villanueva-Meyer, James P. Chandler, David A. Solomon, C. Leland Rogers, Stephanie L. Pugh, Minesh P. Mehta, Penny K. Sneed, Mitchel S. Berger, Craig M. Horbinski, Michael W. McDermott, Arie Perry, Wenya Linda Bi, Akash J. Patel, Felix Sahm, Stephen T. Magill, David R. Raleigh
Nat Med. Author manuscript; available in PMC 2024 May 6.
Published in final edited form as: Nat Med. 2023 Dec; 29(12): 3067–3076. Published online 2023 Nov 9. doi: 10.1038/s41591-023-02586-z
PMCID:
PMC11073469
ArticlePDF–4.5M
5.
A novel computational pipeline for var gene expression augments the discovery of changes in the Plasmodium falciparum transcriptome during transition from in vivo to short-term in vitro culture
Clare Andradi-Brown, Jan Stephan Wichers-Misterek, Heidrun von Thien, Yannick D Höppner, Judith AM Scholz, Helle Hansson, Emma Filtenborg Hocke, Tim Wolf Gilberger, Michael F Duffy, Thomas Lavstsen, Jake Baum, Thomas D Otto, Aubrey J Cunnington, Anna Bachmann
eLife. 2024; 12: RP87726. Published online 2024 Jan 25. doi: 10.7554/eLife.87726
PMCID:
PMC10945709
ArticlePDF–3.6M
6.
BRG1 HSA domain interactions with BCL7 proteins are critical for remodeling and gene expression
Nicholas Dietrich, Kevin Trotter, James M Ward, Trevor K Archer
Life Sci Alliance. 2023 May; 6(5): e202201770. Published online 2023 Feb 17. doi: 10.26508/lsa.202201770
PMCID:
PMC9939006
ArticlePDF–2.6M
7.
Neural circuit-wide analysis of changes to gene expression during deafening-induced birdsong destabilization
Bradley M Colquitt, Kelly Li, Foad Green, Robert Veline, Michael S Brainard
eLife. 2023; 12: e85970. Published online 2023 Jun 7. doi: 10.7554/eLife.85970
PMCID:
PMC10259477
ArticlePDF–12M
8.
A concise guide to choosing suitable gene expression systems for recombinant protein production
Anja Schütz, Frank Bernhard, Nick Berrow, Johannes F. Buyel, Frederico Ferreira-da-Silva, Jurgen Haustraete, Joop van den Heuvel, Jan-Erik Hoffmann, Ario de Marco, Yoav Peleg, Sabine Suppmann, Tamar Unger, Martine Vanhoucke, Susanne Witt, Kim Remans
STAR Protoc. 2023 Dec 15; 4(4): 102572. Published online 2023 Oct 31. doi: 10.1016/j.xpro.2023.102572
PMCID:
PMC10643540
ArticlePDF–3.1M
9.
Powerful mapping of cis-genetic effects on gene expression across diverse populations reveals novel disease-critical genes
Kai Akamatsu, Stephen Golzari, Tiffany Amariuta
Version 1. medRxiv. Preprint. 2024 Sep 26. doi: 10.1101/2024.09.25.24314410
PMCID:
PMC11469471
ArticlePDF–6.4M
10.
Variation in histone configurations correlates with gene expression across nine inbred strains of mice
Anna L. Tyler, Catrina Spruce, Romy Kursawe, Annat Haber, Robyn L. Ball, Wendy A. Pitman, Alexander D. Fine, Narayanan Raghupathy, Michael Walker, Vivek M. Philip, Christopher L. Baker, J. Matthew Mahoney, Gary A. Churchill, Jennifer J. Trowbridge, Michael L. Stitzel, Kenneth Paigen, Petko M. Petkov, Gregory W. Carter
Genome Res. 2023 Jun; 33(6): 857–871. doi: 10.1101/gr.277467.122
PMCID:
PMC10519406
ArticlePDF–1.6M
11.
A single-cell atlas of spatial and temporal gene expression in the mouse cranial neural plate
Eric R Brooks, Andrew R Moorman, Bhaswati Bhattacharya, Ian S Prudhomme, Max Land, Heather L Alcorn, Roshan Sharma, Dana Pe'er, Jennifer A Zallen
eLife. 2025; 13: RP102819. Published online 2025 Apr 7. doi: 10.7554/eLife.102819
PMCID:
PMC11975377
ArticlePDF–15M
12.
Transcriptional outcomes and kinetic patterning of gene expression in response to NF-κB activation
Mingming Zhao, Jaimy Joy, Weiqiang Zhou, Supriyo De, William H. Wood, III, Kevin G. Becker, Hongkai Ji, Ranjan Sen
PLoS Biol. 2018 Sep; 16(9): e2006347. Published online 2018 Sep 10. doi: 10.1371/journal.pbio.2006347
PMCID:
PMC6147668
ArticlePDF–3.6M
13.
A single-cell atlas of spatial and temporal gene expression in the mouse cranial neural plate
Eric R. Brooks, Andrew R. Moorman, Bhaswati Bhattacharya, Ian S. Prudhomme, Max Land, Heather L. Alcorn, Roshan Sharma, Dana Pe’er, Jennifer A. Zallen
Version 3. bioRxiv. Preprint. 2024 Aug 25 [revised 2025 Mar 6]. doi: 10.1101/2024.08.25.609458
Published in:
eLife. 2025; 13: RP102819.
PMCID:
PMC11370589
ArticlePDF–6.9M
14.
Single-cell transcriptome profiles of Drosophila fruitless-expressing neurons from both sexes
Colleen M Palmateer, Catherina Artikis, Savannah G Brovero, Benjamin Friedman, Alexis Gresham, Michelle N Arbeitman
eLife. 2023; 12: e78511. Published online 2023 Feb 1. doi: 10.7554/eLife.78511
PMCID:
PMC9891730
ArticlePDF–18M
15.
Integration of estimated regional gene expression with neuroimaging and clinical phenotypes at biobank scale
Nhung Hoang, Neda Sardaripour, Grace D. Ramey, Kurt Schilling, Emily Liao, Yiting Chen, Jee Hyun Park, Xavier Bledsoe, Bennett A. Landman, Eric R. Gamazon, Mary Lauren Benton, John A. Capra, Mikail Rubinov
PLoS Biol. 2024 Sep; 22(9): e3002782. Published online 2024 Sep 13. doi: 10.1371/journal.pbio.3002782
PMCID:
PMC11424006
ArticlePDF–3.8M
16.
Characterizing the landscape of gene expression variance in humans
Scott Wolf, Diogo Melo, Kristina M. Garske, Luisa F. Pallares, Amanda J. Lea, Julien F. Ayroles
PLoS Genet. 2023 Jul; 19(7): e1010833. Published online 2023 Jul 6. doi: 10.1371/journal.pgen.1010833
PMCID:
PMC10353820
ArticlePDF–2.2M
17.
The genus Arachis: an excellent resource for studies on differential gene expression for stress tolerance
Dilip Kumar, Pulugurtha Bharadwaja Kirti
Front Plant Sci. 2023; 14: 1275854. Published online 2023 Oct 30. doi: 10.3389/fpls.2023.1275854
PMCID:
PMC10646159
ArticlePDF–1.6M
18.
Integrating spatial transcriptomics and bulk RNA-seq: predicting gene expression with enhanced resolution through graph attention networks
Sudipto Baul, Khandakar Tanvir Ahmed, Qibing Jiang, Guangyu Wang, Qian Li, Jeongsik Yong, Wei Zhang
Brief Bioinform. 2024 Jul; 25(4): bbae316. Published online 2024 Jul 3. doi: 10.1093/bib/bbae316
PMCID:
PMC11221891
ArticlePDF–2.0M
19.
Transcriptional regulators ensuring specific gene expression and decision-making at high TGFβ doses
Laura Hartmann, Panajot Kristofori, Congxin Li, Kolja Becker, Lorenz Hexemer, Stefan Bohn, Sonja Lenhardt, Sylvia Weiss, Björn Voss, Alexander Loewer, Stefan Legewie
Life Sci Alliance. 2025 Jan; 8(1): e202402859. Published online 2024 Nov 14. doi: 10.26508/lsa.202402859
PMCID:
PMC11565188
ArticlePDF–3.6M
20.
A novel geminivirus‐derived 3′ flanking sequence of terminator mediates the gene expression enhancement
Yi Zhang, Yibo Xian, Heng Yang, Xuangang Yang, Tianli Yu, Sai Liu, Minting Liang, Xianzhi Jiang, Shulin Deng
Plant Biotechnol J. 2025 Apr; 23(4): 1053–1066. Published online 2024 Dec 26. doi: 10.1111/pbi.14561
PMCID:
PMC11933866
ArticlePDF–1.8M

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