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Select item 114644221.

A next-generation dynamic programming language Julia: Its features and applications in biological science

Soumen Pal, Manojit Bhattacharya, Snehasish Dash, Sang-Soo Lee, Chiranjib Chakraborty

J Adv Res. 2024 Oct; 64: 143–154. Published online 2023 Nov 21. doi: 10.1016/j.jare.2023.11.015

PMCID:: PMC11464422

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Level up your coding: a systematic review of personalized, cognitive, and gamified learning in programming education

Kashif Ishaq, Atif Alvi, Muhammad Ikram ul Haq, Fadhilah Rosdi, Abubakar Nazeer Choudhry, Arslan Anjum, Fawad Ali Khan

PeerJ Comput Sci. 2024; 10: e2310. Published online 2024 Nov 29. doi: 10.7717/peerj-cs.2310

PMCID:: PMC11623090

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Annotation Query (AnnoQ): an integrated and interactive platform for large-scale genetic variant annotation

Zhu Liu, Tremayne Mushayahama, Bryan Queme, Dustin Ebert, Anushya Muruganujan, Caitlin Mills, Paul D Thomas, Huaiyu Mi

Nucleic Acids Res. 2022 Jul 5; 50(W1): W57–W65. Published online 2022 May 30. doi: 10.1093/nar/gkac418

PMCID:: PMC9252745

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Development and Teaching Application of Interactive Virtual Algorithm Animation of C Language Program

Lei Wan, Yongli Cao, Lili Shi, Ying An

Comput Intell Neurosci. 2022; 2022: 7082914. Published online 2022 Jul 30. doi: 10.1155/2022/7082914

Retraction in:: Comput Intell Neurosci. 2023; 2023: 9805650.

PMCID:: PMC9356821

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A qualitative assessment of using ChatGPT as large language model for scientific workflow development

Mario Sänger, Ninon De Mecquenem, Katarzyna Ewa Lewińska, Vasilis Bountris, Fabian Lehmann, Ulf Leser, Thomas Kosch

Gigascience. 2024; 13: giae030. Published online 2024 Jun 19. doi: 10.1093/gigascience/giae030

PMCID:: PMC11186067

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A Query Language for Exploratory Analysis of Video-Based Tracking Data in Padel Matches

Mohammadreza Javadiha, Carlos Andujar, Enrique Lacasa

Sensors (Basel) 2023 Jan; 23(1): 441. Published online 2022 Dec 31. doi: 10.3390/s23010441

PMCID:: PMC9824851

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Python as a Federation Tool for GENESIS 3.0

Hugo Cornelis, Armando L. Rodriguez, Allan D. Coop, James M. Bower

PLoS One. 2012; 7(1): e29018. Published online 2012 Jan 20. doi: 10.1371/journal.pone.0029018

PMCID:: PMC3262781

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The C++ programming language in cheminformatics and computational chemistry

Dmitrii Rassokhin

J Cheminform. 2020; 12: 10. Published online 2020 Feb 7. doi: 10.1186/s13321-020-0415-y

PMCID:: PMC7006409

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Development and evaluation of a training curriculum to engage researchers on accessing and analyzing the All of Us data

Julie R Coleman, Jasmine N Baker, Shamika Ketkar, Ashley M Butler, LaTerrica Williams, Latanya Hammonds-Odie, Elizabeth G Atkinson, Debra D Murray, Brendan Lee, Kim C Worley

J Am Med Inform Assoc. 2024 Dec; 31(12): 2857–2868. Published online 2024 Sep 12. doi: 10.1093/jamia/ocae240

PMCID:: PMC11631121

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Using interactive digital notebooks for bioscience and informatics education

Alan Davies, Frances Hooley, Peter Causey-Freeman, Iliada Eleftheriou, Georgina Moulton

PLoS Comput Biol. 2020 Nov; 16(11): e1008326. Published online 2020 Nov 5. doi: 10.1371/journal.pcbi.1008326

PMCID:: PMC7643937

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Effect of semantic distance on learning structured query language: An empirical study

Shin-Shing Shin

Front Psychol. 2022; 13: 996363. Published online 2022 Nov 9. doi: 10.3389/fpsyg.2022.996363

PMCID:: PMC9682009

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Towards computational reproducibility: researcher perspectives on the use and sharing of software

Yasmin AlNoamany, John A. Borghi

PeerJ Comput Sci. 2018; 4: e163. Published online 2018 Sep 17. doi: 10.7717/peerj-cs.163

PMCID:: PMC7924683

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The Ensembl REST API: Ensembl Data for Any Language

Andrew Yates, Kathryn Beal, Stephen Keenan, William McLaren, Miguel Pignatelli, Graham R. S. Ritchie, Magali Ruffier, Kieron Taylor, Alessandro Vullo, Paul Flicek

Bioinformatics. 2015 Jan 1; 31(1): 143–145. Published online 2014 Sep 17. doi: 10.1093/bioinformatics/btu613

PMCID:: PMC4271150

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Visualizing genome and systems biology: technologies, tools, implementation techniques and trends, past, present and future

Georgios A. Pavlopoulos, Dimitris Malliarakis, Nikolas Papanikolaou, Theodosis Theodosiou, Anton J. Enright, Ioannis Iliopoulos

Gigascience. 2015; 4: 38. Published online 2015 Aug 25. doi: 10.1186/s13742-015-0077-2

PMCID:: PMC4548842

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Has the time come to teach parallel programming to secondary school students?

Predrag Brođanac, Josip Novak, Ivica Boljat

Heliyon. 2022 Jan; 8(1): e08662. Published online 2021 Dec 27. doi: 10.1016/j.heliyon.2021.e08662

PMCID:: PMC8741467

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The Architecture of a Feasibility Query Portal for Distributed COVID-19 Fast Healthcare Interoperability Resources (FHIR) Patient Data Repositories: Design and Implementation Study

Julian Gruendner, Noemi Deppenwiese, Michael Folz, Thomas Köhler, Björn Kroll, Hans-Ulrich Prokosch, Lorenz Rosenau, Mathias Rühle, Marc-Anton Scheidl, Christina Schüttler, Brita Sedlmayr, Alexander Twrdik, Alexander Kiel, Raphael W Majeed

JMIR Med Inform. 2022 May; 10(5): e36709. Published online 2022 May 25. doi: 10.2196/36709

PMCID:: PMC9135115

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OnlineTED.com − a novel web-based audience response system for higher education. A pilot study to evaluate user acceptance

Felizian Kühbeck, Stefan Engelhardt, Antonio Sarikas

GMS Z Med Ausbild. 2014; 31(1): Doc5. Published online 2014 Feb 17. doi: 10.3205/zma000897

PMCID:: PMC3935166

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BioVisReport: A Markdown-based lightweight website builder for reproducible and interactive visualization of results from peer-reviewed publications

Jingcheng Yang, Yaqing Liu, Jun Shang, Yechao Huang, Ying Yu, Zhihui Li, Leming Shi, Zihan Ran

Comput Struct Biotechnol J. 2022; 20: 3133–3139. Published online 2022 Jun 8. doi: 10.1016/j.csbj.2022.06.009

PMCID:: PMC9233186

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An advanced web query interface for biological databases

Mario Latendresse, Peter D. Karp

Database (Oxford) 2010; 2010: baq006. Published online 2010 Mar 29. doi: 10.1093/database/baq006

PMCID:: PMC2911841

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Computational reproducibility of Jupyter notebooks from biomedical publications

Sheeba Samuel, Daniel Mietchen

Gigascience. 2024; 13: giad113. Published online 2024 Jan 11. doi: 10.1093/gigascience/giad113

PMCID:: PMC10783158

Abstract Article PDF–4.9M

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PMC Images search for interactive query language

Figure 3

Use Case 1: example TranQL query and answer KG. The TranQL query was manually translated into the TranQL query language from a natural language query that asked, “What diseases are differentially associated with males and females, and what genes and chemical substances are associated with those diseases?”.

Visualization Environment for Federated Knowledge Graphs: Development of an Interactive Biomedical Query Language and Web Application Interface

JMIR Med Inform. 2020 Nov;8(11):e17964.
Figure 6

Use Case 2: example TranQL query and resultant KG. The TranQL query was manually translated into the TranQL query language from a natural language query that asked, “What diseases are differentially expressed in patients who live in rural versus urban regions, and what genes and chemical substances are associated with those diseases?”.

Visualization Environment for Federated Knowledge Graphs: Development of an Interactive Biomedical Query Language and Web Application Interface

JMIR Med Inform. 2020 Nov;8(11):e17964.
Figure 1

Structure of the query language.

Visualization Environment for Federated Knowledge Graphs: Development of an Interactive Biomedical Query Language and Web Application Interface

JMIR Med Inform. 2020 Nov;8(11):e17964.
Figure 1

Top: a VISAGE query seeking three similar action films from the 1980’s along with a result, found from the Rotten-Tomatoes movie-similarity graph (an edge connects two movies if they are similar). Bottom: the equivalent query written in the Cypher querying language. VISAGE’s interactive graph querying approach significantly simplifies the query writing process.

VISAGE: Interactive Visual Graph Querying

AVI. ;2016:272-279.