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Items: 1 to 20 of 34

1.
The Mutational Landscape of SARS-CoV-2
Bryan Saldivar-Espinoza, Pol Garcia-Segura, Nil Novau-Ferré, Guillem Macip, Ruben Martínez, Pere Puigbò, Adrià Cereto-Massagué, Gerard Pujadas, Santiago Garcia-Vallve
Int J Mol Sci. 2023 May; 24(10): 9072. Published online 2023 May 22. doi: 10.3390/ijms24109072
PMCID:
PMC10219494
ArticlePDF–1.9M
2.
Rethinking the Intrinsic Sensitivity of Fungi to Glyphosate
Tuomas Tall, Pere Puigbò
BioTech (Basel) 2022 Sep; 11(3): 28. Published online 2022 Jul 26. doi: 10.3390/biotech11030028
PMCID:
PMC9394408
ArticlePDF–955K
3.
Why Is the UAG (Amber) Stop Codon Almost Absent in Highly Expressed Bacterial Genes?
Dominique Belin, Pere Puigbò
Life (Basel) 2022 Mar; 12(3): 431. Published online 2022 Mar 16. doi: 10.3390/life12030431
PMCID:
PMC8954436
ArticlePDF–1.2M
4.
Alterations in Metabolome and Microbiome Associated with an Early Stress Stage in Male Wistar Rats: A Multi-Omics Approach
Julia Hernandez-Baixauli, Pere Puigbò, Nerea Abasolo, Hector Palacios-Jordan, Elisabet Foguet-Romero, David Suñol, Mar Galofré, Antoni Caimari, Laura Baselga-Escudero, Josep M. Del Bas, Miquel Mulero
Int J Mol Sci. 2021 Dec; 22(23): 12931. Published online 2021 Nov 29. doi: 10.3390/ijms222312931
PMCID:
PMC8657954
ArticlePDF–4.5M
5.
An Unsupervised Algorithm for Host Identification in Flaviviruses
Phuoc Truong Nguyen, Santiago Garcia-Vallvé, Pere Puigbò
Life (Basel) 2021 May; 11(5): 442. Published online 2021 May 14. doi: 10.3390/life11050442
PMCID:
PMC8157105
ArticlePDF–982K
6.
A Pilot Study for Metabolic Profiling of Obesity-Associated Microbial Gut Dysbiosis in Male Wistar Rats
Julia Hernandez-Baixauli, Pere Puigbò, Helena Torrell, Hector Palacios-Jordan, Vicent J. Ribas Ripoll, Antoni Caimari, Josep M Del Bas, Laura Baselga-Escudero, Miquel Mulero
Biomolecules. 2021 Feb; 11(2): 303. Published online 2021 Feb 18. doi: 10.3390/biom11020303
PMCID:
PMC7922951
ArticlePDF–1.9M
7.
Six-Week Endurance Exercise Alters Gut Metagenome That Is not Reflected in Systemic Metabolism in Over-weight Women
Eveliina Munukka, Juha P. Ahtiainen, Pere Puigbó, Sirpa Jalkanen, Katja Pahkala, Anniina Keskitalo, Urho M. Kujala, Sami Pietilä, Maija Hollmén, Laura Elo, Pentti Huovinen, Giuseppe D'Auria, Satu Pekkala
Front Microbiol. 2018; 9: 2323. Published online 2018 Oct 3. doi: 10.3389/fmicb.2018.02323
PMCID:
PMC6178902
ArticlePDF–2.2M
8.
Reconstruction of the evolution of microbial defense systems
Pere Puigbò, Kira S. Makarova, David M. Kristensen, Yuri I. Wolf, Eugene V. Koonin
BMC Evol Biol. 2017; 17: 94. Published online 2017 Apr 4. doi: 10.1186/s12862-017-0942-y
PMCID:
PMC5379612
ArticlePDF–1.9M
9.
Inevitability of Genetic Parasites
Jaime Iranzo, Pere Puigbò, Alexander E. Lobkovsky, Yuri I. Wolf, Eugene V. Koonin
Genome Biol Evol. 2016 Sep; 8(9): 2856–2869. Published online 2016 Aug 8. doi: 10.1093/gbe/evw193
PMCID:
PMC5631039
ArticlePDF–447K
10.
Genomes in turmoil: quantification of genome dynamics in prokaryote supergenomes
Pere Puigbò, Alexander E Lobkovsky, David M Kristensen, Yuri I Wolf, Eugene V Koonin
BMC Biol. 2014; 12: 66. Published online 2014 Aug 21. doi: 10.1186/s12915-014-0066-4
PMCID:
PMC4166000
ArticlePDF–2.4M
11.
Seeing the Tree of Life behind the phylogenetic forest
Pere Puigbò, Yuri I Wolf, Eugene V Koonin
BMC Biol. 2013; 11: 46. Published online 2013 Apr 15. doi: 10.1186/1741-7007-11-46
PMCID:
PMC3626908
ArticlePDF–335K
12.
GENOME-WIDE COMPARATIVE ANALYSIS OF PHYLOGENETIC TREES: THE PROKARYOTIC FOREST OF LIFE
Pere Puigbò, Yuri I. Wolf, Eugene V. Koonin
Methods Mol Biol. Author manuscript; available in PMC 2013 Nov 28.
Published in final edited form as: Methods Mol Biol. 2012; 856: 10.1007/978-1-61779-585-5_3. doi: 10.1007/978-1-61779-585-5_3
PMCID:
PMC3842619
ArticlePDF–2.6M
13.
Fitness costs limit influenza A virus hemagglutinin glycosylation as an immune evasion strategy
Suman R. Das, Scott E. Hensley, Alexandre David, Loren Schmidt, James S. Gibbs, Pere Puigbò, William L. Ince, Jack R. Bennink, Jonathan W. Yewdell
Proc Natl Acad Sci U S A. 2011 Dec 20; 108(51): E1417–E1422. Published online 2011 Nov 21. doi: 10.1073/pnas.1108754108
PMCID:
PMC3251056
ArticlePDF–1.0M
14.
Glycosylation Focuses Sequence Variation in the Influenza A Virus H1 Hemagglutinin Globular Domain
Suman R. Das, Pere Puigbò, Scott E. Hensley, Darrell E. Hurt, Jack R. Bennink, Jonathan W. Yewdell
PLoS Pathog. 2010 Nov; 6(11): e1001211. Published online 2010 Nov 24. doi: 10.1371/journal.ppat.1001211
PMCID:
PMC2991263
ArticlePDF–1.4M
15.
Search for a 'Tree of Life' in the thicket of the phylogenetic forest
Pere Puigbò, Yuri I Wolf, Eugene V Koonin
J Biol. 2009; 8(6): 59. Published online 2009 Jul 13. doi: 10.1186/jbiol159
PMCID:
PMC2737373
ArticlePDF–3.3M
16.
HEG-DB: a database of predicted highly expressed genes in prokaryotic complete genomes under translational selection
Pere Puigbò, Antoni Romeu, Santiago Garcia-Vallvé
Nucleic Acids Res. 2008 Jan; 36(Database issue): D524–D527. Published online 2007 Oct 11. doi: 10.1093/nar/gkm831
PMCID:
PMC2238906
ArticlePDF–373K
17.
Use of Live Biopreservatives and Bacteriophages to Enhance the Safety of Meat Products
Cristina Rodríguez-Marca, Cristina Domenech-Coca, Miho Nakamura, Nàdia Ortega-Olivé, Pere Puigbò
Life (Basel) 2025 Feb; 15(2): 197. Published online 2025 Jan 28. doi: 10.3390/life15020197
PMCID:
PMC11856376
ArticlePDF–1.1M
18.
Use of the Phylobone database for the annotation of bone extracellular matrix proteins in reindeer (Rangifer tarandus)
Alba Sánchez-Reverté, Margalida Fontcuberta-Rigo, Miho Nakamura, Pere Puigbò
Sci Prog. 2024 Apr-Jun; 107(2): 00368504241244666. Published online 2024 Apr 13. doi: 10.1177/00368504241244666
PMCID:
PMC11024589
ArticlePDF–763K
19.
Phylobone: a comprehensive database of bone extracellular matrix proteins in human and model organisms
Margalida Fontcuberta-Rigo, Miho Nakamura, Pere Puigbò
Bone Res. 2023; 11: 44. Published online 2023 Aug 15. doi: 10.1038/s41413-023-00281-w
PMCID:
PMC10425349
ArticlePDF–1.5M
20.
Glyphosate and a glyphosate-based herbicide affect bumblebee gut microbiota
Marjo Helander, Aditya Jeevannavar, Kimmo Kaakinen, Suni A Mathew, Kari Saikkonen, Benjamin Fuchs, Pere Puigbò, Olli J Loukola, Manu Tamminen
FEMS Microbiol Ecol. 2023 Jul; 99(7): fiad065. Published online 2023 Jun 14. doi: 10.1093/femsec/fiad065
PMCID:
PMC10306328
ArticlePDF–1018K

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