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Select item 23732921.

Efficiency of the immunome protein interaction network increases during evolution

Csaba Ortutay, Mauno Vihinen

Immunome Res. 2008; 4: 4. Published online 2008 Apr 22. doi: 10.1186/1745-7580-4-4

PMCID:: PMC2373292

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Select item 12870632.

Immunome Research

Nikolai Petrovsky

Immunome Res. 2005; 1: 1. Published online 2005 Sep 20. doi: 10.1186/1745-7580-1-1

PMCID:: PMC1287063

Article PubReader PDF–164K Cite

Select item 30099563.

Human immunome, bioinformatic analyses using HLA supermotifs and the parasite genome, binding assays, studies of human T cell responses, and immunization of HLA-A*1101 transgenic mice including novel adjuvants provide a foundation for HLA-A03 restricted CD8⁺T cell epitope based, adjuvanted vaccine protective against Toxoplasma gondii

Hua Cong, Ernest J Mui, William H Witola, John Sidney, Jeff Alexander, Alessandro Sette, Ajesh Maewal, Rima McLeod

Immunome Res. 2010; 6: 12. Published online 2010 Dec 3. doi: 10.1186/1745-7580-6-12

PMCID:: PMC3009956

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Select item 18548874.

IDR knowledge base for primary immunodeficiencies

Crina Samarghitean, Jouni Väliaho, Mauno Vihinen

Immunome Res. 2007; 3: 6. Published online 2007 Mar 29. doi: 10.1186/1745-7580-3-6

PMCID:: PMC1854887

Article PubReader PDF–744K Cite

Select item 18451405.

ImmTree: Database of evolutionary relationships of genes and proteins in the human immune system

Csaba Ortutay, Markku Siermala, Mauno Vihinen

Immunome Res. 2007; 3: 4. Published online 2007 Mar 21. doi: 10.1186/1745-7580-3-4

PMCID:: PMC1845140

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Select item 29467826.

Clustering-based identification of clonally-related immunoglobulin gene sequence sets

Zhiliang Chen, Andrew M Collins, Yan Wang, Bruno A Gaëta

Immunome Res. 2010; 6(Suppl 1): S4. Published online 2010 Sep 27. doi: 10.1186/1745-7580-6-S1-S4

PMCID:: PMC2946782

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Select item 29467797.

Stacking and energetic contribution of aromatic islands at the binding interface of antibody proteins

Di Wu, Jing Sun, Tianlei Xu, Shuning Wang, Guoqing Li, Yixue Li, Zhiwei Cao

Immunome Res. 2010; 6(Suppl 1): S1. Published online 2010 Sep 27. doi: 10.1186/1745-7580-6-S1-S1

PMCID:: PMC2946779

Article PubReader PDF–1021K Cite

Select item 29467818.

Model refinement through high-performance computing: an agent-based HIV example

Dimitri Perrin, Heather J Ruskin, Martin Crane

Immunome Res. 2010; 6(Suppl 1): S3. Published online 2010 Sep 27. doi: 10.1186/1745-7580-6-S1-S3

PMCID:: PMC2946781

Article PubReader PDF–381K Cite

Select item 29818809.

Computer aided selection of candidate vaccine antigens

Darren R Flower, Isabel K Macdonald, Kamna Ramakrishnan, Matthew N Davies, Irini A Doytchinova

Immunome Res. 2010; 6(Suppl 2): S1. Published online 2010 Nov 3. doi: 10.1186/1745-7580-6-S2-S1

PMCID:: PMC2981880

Article PubReader PDF–717K Cite

Select item 297466410.

Identification of conformational B-cell Epitopes in an antigen from its primary sequence

Hifzur Rahman Ansari, Gajendra PS Raghava

Immunome Res. 2010; 6: 6. Published online 2010 Oct 20. doi: 10.1186/1745-7580-6-6

PMCID:: PMC2974664

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Select item 294678411.

TAP Hunter: a SVM-based system for predicting TAP ligands using local description of amino acid sequence

Tze Hau Lam, Hiroshi Mamitsuka, Ee Chee Ren, Joo Chuan Tong

Immunome Res. 2010; 6(Suppl 1): S6. Published online 2010 Sep 27. doi: 10.1186/1745-7580-6-S1-S6

PMCID:: PMC2946784

Article PubReader PDF–457K Cite

Select item 180376512.

Protein sequence database for pathogenic arenaviruses

Huynh-Hoa Bui, Jason Botten, Nicolas Fusseder, Valerie Pasquetto, Bianca Mothe, Michael J Buchmeier, Alessandro Sette

Immunome Res. 2007; 3: 1. Published online 2007 Feb 8. doi: 10.1186/1745-7580-3-1

PMCID:: PMC1803765

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Select item 298187513.

Applying bioinformatics for antibody epitope prediction using affinity-selected mimotopes – relevance for vaccine design

Galina F Denisova, Dimitri A Denisov, Jonathan L Bramson

Immunome Res. 2010; 6(Suppl 2): S6. Published online 2010 Nov 3. doi: 10.1186/1745-7580-6-S2-S6

PMCID:: PMC2981875

Article PubReader PDF–257K Cite

Select item 266906414.

Genetic correlates of autoreactivity and autoreactive potential in human Ig heavy chains

Joseph M Volpe, Thomas B Kepler

Immunome Res. 2009; 5: 1. Published online 2009 Feb 27. doi: 10.1186/1745-7580-5-1

PMCID:: PMC2669064

Article PubReader PDF–453K Cite

Select item 181024015.

EpitopeViewer: a Java application for the visualization and analysis of immune epitopes in the Immune Epitope Database and Analysis Resource (IEDB)

John E Beaver, Philip E Bourne, Julia V Ponomarenko

Immunome Res. 2007; 3: 3. Published online 2007 Feb 21. doi: 10.1186/1745-7580-3-3

PMCID:: PMC1810240

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Select item 128706416.

An ontology for immune epitopes: application to the design of a broad scope database of immune reactivities

Muthuraman Sathiamurthy, Bjoern Peters, Huynh-Hoa Bui, John Sidney, John Mokili, Stephen S Wilson, Ward Fleri, Deborah L McGuinness, Philip E Bourne, Alessandro Sette

Immunome Res. 2005; 1: 2. Published online 2005 Sep 20. doi: 10.1186/1745-7580-1-2

PMCID:: PMC1287064

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Select item 147932317.

Improved method for predicting linear B-cell epitopes

Jens Erik Pontoppidan Larsen, Ole Lund, Morten Nielsen

Immunome Res. 2006; 2: 2. Published online 2006 Apr 24. doi: 10.1186/1745-7580-2-2

PMCID:: PMC1479323

Article PubReader PDF–305K Cite

Select item 204013718.

In silico characterization of immunogenic epitopes presented by HLA-Cw*0401

Joo Chuan Tong, Zong Hong Zhang, J Thomas August, Vladimir Brusic, Tin Wee Tan, Shoba Ranganathan

Immunome Res. 2007; 3: 7. Published online 2007 Aug 20. doi: 10.1186/1745-7580-3-7

PMCID:: PMC2040137

Article PubReader PDF–514K Cite

Select item 283466219.

A novel paradigm for cell and molecule interaction ontology: from the CMM model to IMGT-ONTOLOGY

Francesco Pappalardo, Marie-Paule Lefranc, Pier-Luigi Lollini, Santo Motta

Immunome Res. 2010; 6: 1. Published online 2010 Feb 18. doi: 10.1186/1745-7580-6-1

PMCID:: PMC2834662

Article PubReader PDF–939K Cite

Select item 270235120.

Of mice and humans: how good are HLA transgenic mice as a model of human immune responses?

Maya F Kotturi, Erika Assarsson, Bjoern Peters, Howard Grey, Carla Oseroff, Valerie Pasquetto, Alessandro Sette

Immunome Res. 2009; 5: 3. Published online 2009 Jun 17. doi: 10.1186/1745-7580-5-3

PMCID:: PMC2702351

Article PubReader PDF–305K Cite

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