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Items: 1 to 20 of 1896

1.
Separating the Wheat from the Chaff: The Use of Upstream Regulator Analysis to Identify True Differential Expression of Single Genes within Transcriptomic Datasets
Jeremiah Hadwen, Sarah Schock, Faraz Farooq, Alex MacKenzie, Julio Plaza-Diaz
Int J Mol Sci. 2021 Jun; 22(12): 6295. Published online 2021 Jun 11. doi: 10.3390/ijms22126295
PMCID:
PMC8231191
ArticlePubReaderPDF–2.4MCite
2.
Upstream Regulator Analysis of Wooden Breast Myopathy Proteomics in Commercial Broilers and Comparison to Feed Efficiency Proteomics in Pedigree Male Broilers
Walter G. Bottje, Kentu R. Lassiter, Vivek A. Kuttappan, Nicholas J. Hudson, Casey M. Owens, Behnam Abasht, Sami Dridi, Byungwhi C. Kong
Foods. 2021 Jan; 10(1): 104. Published online 2021 Jan 6. doi: 10.3390/foods10010104
PMCID:
PMC7825620
ArticlePubReaderPDF–8.6MCite
3.
Long non-coding RNA AC099850.4 correlates with advanced disease state and predicts worse prognosis in triple-negative breast cancer
Radhakrishnan Vishnubalaji, Nehad M. Alajez
Front Med (Lausanne) 2023; 10: 1149860. Published online 2023 Aug 31. doi: 10.3389/fmed.2023.1149860
PMCID:
PMC10505935
ArticlePubReaderPDF–5.1MCite
4.
Identification of Key Pathways and Genes in the Dynamic Progression of HCC Based on WGCNA
Li Yin, Zhihui Cai, Baoan Zhu, Cunshuan Xu
Genes (Basel) 2018 Feb; 9(2): 92. Published online 2018 Feb 14. doi: 10.3390/genes9020092
PMCID:
PMC5852588
ArticlePubReaderPDF–2.6MCite
5.
Functional Interfaces, Biological Pathways, and Regulations of Interferon-Related DNA Damage Resistance Signature (IRDS) Genes
Monikaben Padariya, Alicja Sznarkowska, Sachin Kote, Maria Gómez-Herranz, Sara Mikac, Magdalena Pilch, Javier Alfaro, Robin Fahraeus, Ted Hupp, Umesh Kalathiya
Biomolecules. 2021 May; 11(5): 622. Published online 2021 Apr 22. doi: 10.3390/biom11050622
PMCID:
PMC8143464
ArticlePubReaderPDF–4.5MCite
6.
Old blood from heterochronic parabionts accelerates vascular aging in young mice: transcriptomic signature of pathologic smooth muscle remodeling
Tamas Kiss, Ádám Nyúl-Tóth, Rafal Gulej, Stefano Tarantini, Tamas Csipo, Peter Mukli, Anna Ungvari, Priya Balasubramanian, Andriy Yabluchanskiy, Zoltan Benyo, Shannon M. Conley, Jonathan D. Wren, Lori Garman, Derek M. Huffman, Anna Csiszar, Zoltan Ungvari
GeroScience. 2022 Apr; 44(2): 953–981. Published online 2022 Feb 5. doi: 10.1007/s11357-022-00519-1
PMCID:
PMC9135944
ArticlePubReaderPDF–3.6MCite
7.
Screening and Functional Prediction of Key Candidate Genes in Hepatitis B Virus-Associated Hepatocellular Carcinoma
Xia Chen, Ling Liao, Yuwei Li, Hengliu Huang, Qing Huang, Shaoli Deng
Biomed Res Int. 2020; 2020: 7653506. Published online 2020 Oct 9. doi: 10.1155/2020/7653506
PMCID:
PMC7568806
ArticlePubReaderPDF–3.1MCite
8.
Divergence in Morris Water Maze-Based Cognitive Performance under Chronic Stress Is Associated with the Hippocampal Whole Transcriptomic Modification in Mice
Seung H. Jung, Milene L. Brownlow, Matteo Pellegrini, Ryan Jankord
Front Mol Neurosci. 2017; 10: 275. Published online 2017 Aug 30. doi: 10.3389/fnmol.2017.00275
PMCID:
PMC5582454
ArticlePubReaderPDF–3.6MCite
9.
Comparative Gene Expression Profiling of Primary and Metastatic Renal Cell Carcinoma Stem Cell-Like Cancer Cells
Mohammed I. Khan, Anna M. Czarnecka, Sławomir Lewicki, Igor Helbrecht, Klaudia Brodaczewska, Irena Koch, Robert Zdanowski, Magdalena Król, Cezary Szczylik
PLoS One. 2016; 11(11): e0165718. Published online 2016 Nov 3. doi: 10.1371/journal.pone.0165718
PMCID:
PMC5094751
ArticlePubReaderPDF–8.3MCite
10.
Transcriptomics analysis of hepatotoxicity induced by the pesticides imazalil, thiacloprid and clothianidin alone or in binary mixtures in a 28-day study in female Wistar rats
Jimmy Alarcan, Heike Sprenger, Julia Waizenegger, Dajana Lichtenstein, Claudia Luckert, Philip Marx-Stoelting, Alfonso Lampen, Albert Braeuning
Arch Toxicol. 2021; 95(3): 1039–1053. Published online 2021 Jan 11. doi: 10.1007/s00204-020-02969-y
PMCID:
PMC7904562
ArticlePubReaderPDF–3.4MCite
11.
PRYNT: a tool for prioritization of disease candidates from proteomics data using a combination of shortest-path and random walk algorithms
Franck Boizard, Bénédicte Buffin-Meyer, Julien Aligon, Olivier Teste, Joost P. Schanstra, Julie Klein
Sci Rep. 2021; 11: 5764. Published online 2021 Mar 11. doi: 10.1038/s41598-021-85135-3
PMCID:
PMC7952700
ArticlePubReaderPDF–3.8MCite
12.
Alcohol-and-HIV-Induced Lysosomal Dysfunction Regulates Extracellular Vesicles Secretion in Vitro and in Liver-Humanized Mice
Raghubendra Singh Dagur, Moses New-Aaron, Murali Ganesan, Weimin Wang, Svetlana Romanova, Srivatsan Kidambi, Kusum K. Kharbanda, Larisa Y. Poluektova, Natalia A. Osna
Biology (Basel) 2021 Jan; 10(1): 29. Published online 2021 Jan 5. doi: 10.3390/biology10010029
PMCID:
PMC7824801
ArticlePubReaderPDF–2.7MCite
13.
Identification of Upstream Transcriptional Regulators of Ischemic Cardiomyopathy Using Cardiac RNA-Seq Meta-Analysis
Ahmad Alimadadi, Sachin Aryal, Ishan Manandhar, Bina Joe, Xi Cheng
Int J Mol Sci. 2020 May; 21(10): 3472. Published online 2020 May 14. doi: 10.3390/ijms21103472
PMCID:
PMC7278960
ArticlePubReaderPDF–6.3MCite
14.
2D DIGE proteomic analysis reveals fasting‐induced protein remodeling through organ‐specific transcription factor(s) in mice
Shotaro Kamata, Junya Yamamoto, Haruka Ohtani, Yuka Tosaka, Sayumi Yoshikawa, Noriyuki Akahoshi, Isao Ishii
FEBS Open Bio. 2018 Sep; 8(9): 1524–1543. Published online 2018 Aug 13. doi: 10.1002/2211-5463.12497
PMCID:
PMC6120221
ArticlePubReaderPDF–1.8MCite
15.
Identification of novel biomarker and therapeutic target candidates for acute intracerebral hemorrhage by quantitative plasma proteomics
Guo-chun Li, Lina Zhang, Ming Yu, Haiyu Jia, Ting Tian, Junqin Wang, Fuqiang Wang, Ling Zhou
Clin Proteomics. 2017; 14: 14. Published online 2017 Apr 26. doi: 10.1186/s12014-017-9149-x
PMCID:
PMC5406897
ArticlePubReaderPDF–1.6MCite
16.
Novel Host Pathways Govern Epithelial Cell Invasion of Aspergillus fumigatus
Hong Liu, Amol C. Shetty, Ashraf S. Ibrahim, Scott G. Filler, Vincent M. Bruno
Microbiol Spectr. 2023 Jul-Aug; 11(4): e00084-23. Published online 2023 May 31. doi: 10.1128/spectrum.00084-23
PMCID:
PMC10434228
ArticlePubReaderPDF–2.8MCite
17.
Hypothesis-generating analysis of the impact of non-damaging metabolic acidosis on the transcriptome of different cell types: Integrated stress response (ISR) modulation as general transcriptomic reaction to non-respiratory acidic stress?
Virginie Dubourg, Marie-Christin Schulz, Philipp Terpe, Stefanie Ruhs, Michael Kopf, Michael Gekle
PLoS One. 2023; 18(8): e0290373. Published online 2023 Aug 25. doi: 10.1371/journal.pone.0290373
PMCID:
PMC10456223
ArticlePubReaderPDF–2.6MCite
18.
Global Gene Expression Profiling in Omental Adipose Tissue of Morbidly Obese Diabetic African Americans
Ayo P. Doumatey, Huichun Xu, Hanxia Huang, Niraj S. Trivedi, Lin Lei, Abdel Elkahloun, Adebowale Adeyemo, Charles N. Rotimi
J Endocrinol Metab. Author manuscript; available in PMC 2015 Oct 24.
Published in final edited form as: J Endocrinol Metab. 2015 Jun; 5(3): 199–210. doi: 10.14740/jem286w
PMCID:
PMC4618674
ArticlePubReaderPDF–1.4MCite
19.
G2/M checkpoint plays a vital role at the early stage of HCC by analysis of key pathways and genes
Li Yin, Cuifang Chang, Cunshuan Xu
Oncotarget. 2017 Sep 29; 8(44): 76305–76317. Published online 2017 Jul 18. doi: 10.18632/oncotarget.19351
PMCID:
PMC5652707
ArticlePubReaderPDF–4.5MCite
20.
Natural aging and ovariectomy induces parallel phosphoproteomic alterations in skeletal muscle of female mice
Mina P. Peyton, Tzu-Yi Yang, LeeAnn Higgins, Todd W. Markowski, Kevin Murray, Cha Vue, Laurie L. Parker, Dawn A. Lowe
Aging (Albany NY) 2023 Aug 15; 15(15): 7362–7380. Published online 2023 Aug 14. doi: 10.18632/aging.204959
PMCID:
PMC10457050
ArticlePubReaderPDF–1.9MCite

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