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Items: 15

Select item 83867401.

Mammalian BCAS3 and C16orf70 associate with the phagophore assembly site in response to selective and non-selective autophagy

Waka Kojima, Koji Yamano, Hidetaka Kosako, Kenichiro Imai, Reika Kikuchi, Keiji Tanaka, Noriyuki Matsuda

Autophagy. 2021; 17(8): 2011–2036. Published online 2021 Jan 26. doi: 10.1080/15548627.2021.1874133

PMCID:: PMC8386740

Article PDF–13M

Select item 61525022.

6-Hydroxydopamine induces secretion of PARK7/DJ-1 via autophagy-based unconventional secretory pathway

Yasuomi Urano, Chinatsu Mori, Ayano Fuji, Keito Konno, Takayuki Yamamoto, Shohei Yashirogi, Mayu Ando, Yoshiro Saito, Noriko Noguchi

Autophagy. 2018; 14(11): 1943–1958. Published online 2018 Aug 16. doi: 10.1080/15548627.2018.1493043

PMCID:: PMC6152502

Article PDF–2.0M

Select item 98971943.

WDR45 variants cause ferrous iron loss due to impaired ferritinophagy associated with nuclear receptor coactivator 4 and WD repeat domain phosphoinositide interacting protein 4 reduction

Kiwako Tsukida, Shin-ichi Muramatsu, Hitoshi Osaka, Takanori Yamagata, Kazuhiro Muramatsu

Brain Commun. 2022; 4(6): fcac304. Published online 2022 Nov 23. doi: 10.1093/braincomms/fcac304

PMCID:: PMC9897194

Article PDF–1.7M

Select item 93038244.

A Robust Nanoparticle-based Magnetic Separation Method for Intact Lysosomes

The Son Le, Mari Takahashi, Shinya Maenosono

Bio Protoc. 2022 Jul 5; 12(13): e4453 . Published online 2022 Jul 5. doi: 10.21769/BioProtoc.4453

PMCID:: PMC9303824

Article

Select item 37043265.

Using LC3 to Monitor Autophagy Flux in the Retinal Pigment Epithelium

Ai Ling Wang, Michael E Boulton, William A Dunn, Jr, Harripriya Vittal Rao, Jun Cai, Thomas J. Lukas, Arthur H. Neufeld

Autophagy. Author manuscript; available in PMC 2013 Jul 8.

Published in final edited form as: Autophagy. 2009 Nov; 5(8): 1190–1193. Published online 2009 Nov 16. doi: 10.4161/auto.5.8.10087

PMCID:: PMC3704326

Article PDF–448K

Select item 120063726.

Fragile X messenger ribonucleoprotein 1 (FMRP) regulates glycolytic gene expression under chronic hypoxia in HCT116 cells

Yoko Ogura, Xiaoning Sun, Zaijun Zhang, Kentaro Kawata, Jinyu Wu, Ryuma Matsubara, Atsuko Nakanishi Ozeki, Kenzui Taniue, Rena Onoguchi-Mizutani, Shungo Adachi, Koh Nakayama, Nobuhito Goda, Nobuyoshi Akimitsu

Sci Rep. 2025; 15: 13273. Published online 2025 Apr 17. doi: 10.1038/s41598-025-91828-w

PMCID:: PMC12006372

Article PDF–7.7M

Select item 58562427.

The RiboPuromycylation Method (RPM): an Immunofluorescence Technique to Map Translation Sites at the Sub-cellular Level

Amandine Bastide, Jonathan W. Yewdell, Alexandre David

Bio Protoc. 2018 Jan 5; 8(1): e2669. Published online 2018 Jan 5. doi: 10.21769/BioProtoc.2669

PMCID:: PMC5856242

Article PDF–1.1M

Select item 74801018.

Critical role of mitochondrial ubiquitination and the OPTN–ATG9A axis in mitophagy

Koji Yamano, Reika Kikuchi, Waka Kojima, Ryota Hayashida, Fumika Koyano, Junko Kawawaki, Takuji Shoda, Yosuke Demizu, Mikihiko Naito, Keiji Tanaka, Noriyuki Matsuda

J Cell Biol. 2020 Sep 7; 219(9): e201912144. Published online 2020 Jun 17. doi: 10.1083/jcb.201912144

PMCID:: PMC7480101

Article PDF–9.9M

Select item 100687679.

Oxidative stress induces MUC5AC expression through mitochondrial damage‐dependent STING signaling in human bronchial epithelial cells

Yutaka Nishida, Hisako Yagi, Masaya Ota, Atsushi Tanaka, Koichiro Sato, Takaharu Inoue, Satoshi Yamada, Naoya Arakawa, Takashi Ishige, Yasuko Kobayashi, Hirokazu Arakawa, Takumi Takizawa

FASEB Bioadv. 2023 Apr; 5(4): 171–181. Published online 2023 Feb 17. doi: 10.1096/fba.2022-00081

PMCID:: PMC10068767

Article PDF–1.1M

Select item 459066310.

Expression of a ULK1/2 binding-deficient ATG13 variant can partially restore autophagic activity in ATG13-deficient cells

Nora Hieke, Antje S Löffler, Takeshi Kaizuka, Niklas Berleth, Philip Böhler, Stefan Drießen, Fabian Stuhldreier, Olena Friesen, Kaivon Assani, Katharina Schmitz, Christoph Peter, Britta Diedrich, Jörn Dengjel, Petter Holland, Anne Simonsen, Sebastian Wesselborg, Noboru Mizushima, Björn Stork

Autophagy. 2015 Sep; 11(9): 1471–1483. Published online 2015 Jul 25. doi: 10.1080/15548627.2015.1068488

PMCID:: PMC4590663

Article PDF–1.0M

Select item 751934711.

Concanamycin A counteracts HIV-1 Nef to enhance immune clearance of infected primary cells by cytotoxic T lymphocytes

Mark M. Painter, Gretchen E. Zimmerman, Madeline S. Merlino, Andrew W. Robertson, Valeri H. Terry, Xuefeng Ren, Megan R. McLeod, Lyanne Gomez-Rodriguez, Kirsten A. Garcia, Jolie A. Leonard, Kay E. Leopold, Andrew J. Neevel, Jay Lubow, Eli Olson, Alicja Piechocka-Trocha, David R. Collins, Ashootosh Tripathi, Malini Raghavan, Bruce D. Walker, James H. Hurley, David H. Sherman, Kathleen L. Collins

Proc Natl Acad Sci U S A. 2020 Sep 22; 117(38): 23835–23846. Published online 2020 Sep 8. doi: 10.1073/pnas.2008615117

PMCID:: PMC7519347

Article PDF–2.5M

Select item 1192276812.

Subcellular proteomics and iPSC modeling uncover reversible mechanisms of axonal pathology in Alzheimer’s disease

Yifei Cai, Jean Kanyo, Rashaun Wilson, Shveta Bathla, Pablo Leal Cardozo, Lei Tong, Shanshan Qin, Lukas A. Fuentes, Iguaracy Pinheiro-de-Sousa, Tram Huynh, Liyuan Sun, Mohammad Shahid Mansuri, Zichen Tian, Hao-Ran Gan, Amber Braker, Hoang Kim Trinh, Anita Huttner, TuKiet T. Lam, Evangelia Petsalaki, Kristen J. Brennand, Angus C. Nairn, Jaime Grutzendler

Nat Aging. 2025; 5(3): 504–527. Published online 2025 Mar 10. doi: 10.1038/s43587-025-00823-3

PMCID:: PMC11922768

Article PDF–17M

Select item 872661613.

Direct homophilic interaction of LAMP2A with the two-domain architecture revealed by site-directed photo-crosslinks and steric hindrances in mammalian cells

Kazue Terasawa, Yuji Kato, Yuta Ikami, Kensaku Sakamoto, Kazumasa Ohtake, Seisuke Kusano, Yuri Tomabechi, Mutsuko Kukimoto-Niino, Mikako Shirouzu, Jun-Lin Guan, Toshihide Kobayashi, Takanori Iwata, Tetsuro Watabe, Shigeyuki Yokoyama, Miki Hara-Yokoyama

Autophagy. 2021; 17(12): 4286–4304. Published online 2021 Apr 14. doi: 10.1080/15548627.2021.1911017