"Genome Biol"[journal] - PMC

Wei Ge, Yi-Lin Niu, Yu-Kang Li, Li Li, Han Wang, Wen-Wen Li, Tian Qiao, Yan-Ni Feng, Yu-Qing Feng, Jing Liu, Jun-Jie Wang, Xiao-Feng Sun, Shun-Feng Cheng, Lan Li, Wei Shen

Genome Biol. 2025; 26: 2. Published online 2025 Jan 2. doi: 10.1186/s13059-024-03464-8

PMCID:: PMC11694410

Abstract Article PDF–6.5M

Select item 116870744.

Chromatin-based memory as a self-stabilizing influence on cell identity

Charles C. Bell, Geoffrey J. Faulkner, Omer Gilan

Genome Biol. 2024; 25: 320. Published online 2024 Dec 30. doi: 10.1186/s13059-024-03461-x

PMCID:: PMC11687074

Abstract Article PDF–1.2M

Select item 116870235.

vmrseq: probabilistic modeling of single-cell methylation heterogeneity

Ning Shen, Keegan Korthauer

Genome Biol. 2024; 25: 321. Published online 2024 Dec 30. doi: 10.1186/s13059-024-03457-7

PMCID:: PMC11687023

Abstract Article PDF–3.0M

Select item 116609286.

Multi-omics approaches reveal that diffuse midline gliomas present altered DNA replication and are susceptible to replication stress therapy

Anastasia E. Hains, Kashish Chetal, Tsunetoshi Nakatani, Joana G. Marques, Andreas Ettinger, Carlos A. O. Biagi Junior, Adriana Gonzalez-Sandoval, Renjitha Pillai, Mariella G. Filbin, Maria-Elena Torres-Padilla, Ruslan I. Sadreyev, Capucine Van Rechem

Genome Biol. 2024; 25: 319. Published online 2024 Dec 20. doi: 10.1186/s13059-024-03460-y

PMCID:: PMC11660928

Abstract Article PDF–3.7M

Select item 116606817.

Systematic evaluation of methylation-based cell type deconvolution methods for plasma cell-free DNA

Tongyue Sun, Jinqi Yuan, Yacheng Zhu, Jingqi Li, Shen Yang, Junpeng Zhou, Xinzhou Ge, Susu Qu, Wei Li, Jingyi Jessica Li, Yumei Li

Genome Biol. 2024; 25: 318. Published online 2024 Dec 19. doi: 10.1186/s13059-024-03456-8

PMCID:: PMC11660681

Abstract Article PDF–7.6M

Select item 116581318.

SyntheVAEiser: augmenting traditional machine learning methods with VAE-based gene expression sample generation for improved cancer subtype predictions

Brian Karlberg, Raphael Kirchgaessner, Jordan Lee, Matthew Peterkort, Liam Beckman, Jeremy Goecks, Kyle Ellrott

Genome Biol. 2024; 25: 309. Published online 2024 Dec 18. doi: 10.1186/s13059-024-03431-3

PMCID:: PMC11658131

Abstract Article PDF–2.8M

Select item 116191519.

Systemic evaluation of various CRISPR/Cas13 orthologs for knockdown of targeted transcripts in plants

Lu Yu, Jiawei Zou, Amjad Hussain, Ruoyu Jia, Yibo Fan, Jinhang Liu, Xinhui Nie, Xianlong Zhang, Shuangxia Jin

Genome Biol. 2024; 25: 307. Published online 2024 Dec 5. doi: 10.1186/s13059-024-03448-8

PMCID:: PMC11619151

Abstract Article PDF–7.2M

Select item 1161391610.

Chromatin loops gather targets of upstream regulators together for efficient gene transcription regulation during vernalization in wheat

Yanyan Liu, Xintong Xu, Chao He, Liujie Jin, Ziru Zhou, Jie Gao, Minrong Guo, Xin Wang, Chuanye Chen, Mohammed H. Ayaad, Xingwang Li, Wenhao Yan

Genome Biol. 2024; 25: 306. Published online 2024 Dec 3. doi: 10.1186/s13059-024-03437-x

PMCID:: PMC11613916

Abstract Article PDF–7.7M

Select item 1161019711.

SMART: spatial transcriptomics deconvolution using marker-gene-assisted topic model

Chen Xi Yang, Don D. Sin, Raymond T. Ng

Genome Biol. 2024; 25: 304. Published online 2024 Dec 2. doi: 10.1186/s13059-024-03441-1

PMCID:: PMC11610197

Abstract Article PDF–9.5M

Select item 1161016412.

HTAD: a human-in-the-loop framework for supervised chromatin domain detection

Wei Shen, Ping Zhang, Yiwei Jiang, Hailin Tao, Zhike Zi, Li Li

Genome Biol. 2024; 25: 302. Published online 2024 Dec 2. doi: 10.1186/s13059-024-03445-x

PMCID:: PMC11610164

Abstract Article PDF–3.2M

Select item 1160608813.

Genetic-by-age interaction analyses on complex traits in UK Biobank and their potential to identify effects on longitudinal trait change

Thomas W. Winkler, Simon Wiegrebe, Janina M. Herold, Klaus J. Stark, Helmut Küchenhoff, Iris M. Heid

Genome Biol. 2024; 25: 300. Published online 2024 Nov 28. doi: 10.1186/s13059-024-03439-9

PMCID:: PMC11606088

Abstract Article PDF–3.9M

Select item 1158044014.

The genomic portrait of the Picene culture provides new insights into the Italic Iron Age and the legacy of the Roman Empire in Central Italy

Francesco Ravasini, Helja Kabral, Anu Solnik, Luciana de Gennaro, Francesco Montinaro, Ruoyun Hui, Chiara Delpino, Stefano Finocchi, Pierluigi Giroldini, Oscar Mei, Michael Allen Beck De Lotto, Elisabetta Cilli, Mogge Hajiesmaeil, Letizia Pistacchia, Flavia Risi, Chiara Giacometti, Christiana Lyn Scheib, Kristiina Tambets, Mait Metspalu, Fulvio Cruciani, Eugenia D’Atanasio, Beniamino Trombetta

Genome Biol. 2024; 25: 292. Published online 2024 Nov 21. doi: 10.1186/s13059-024-03430-4

PMCID:: PMC11580440

Abstract Article PDF–2.2M

Select item 1156612415.

VI-VS: calibrated identification of feature dependencies in single-cell multiomics

Pierre Boyeau, Stephen Bates, Can Ergen, Michael I. Jordan, Nir Yosef

Genome Biol. 2024; 25: 294. Published online 2024 Nov 15. doi: 10.1186/s13059-024-03419-z

PMCID:: PMC11566124

Abstract Article PDF–2.8M

Select item 1156690516.

Cohesin distribution alone predicts chromatin organization in yeast via conserved-current loop extrusion

Tianyu Yuan, Hao Yan, Kevin C. Li, Ivan Surovtsev, Megan C. King, Simon G. J. Mochrie

Genome Biol. 2024; 25: 293. Published online 2024 Nov 14. doi: 10.1186/s13059-024-03432-2

PMCID:: PMC11566905

Abstract Article PDF–5.2M

Select item 1155214517.

SpottedPy quantifies relationships between spatial transcriptomic hotspots and uncovers environmental cues of epithelial-mesenchymal plasticity in breast cancer

Eloise Withnell, Maria Secrier

Genome Biol. 2024; 25: 289. Published online 2024 Nov 11. doi: 10.1186/s13059-024-03428-y

PMCID:: PMC11552145

Abstract Article PDF–4.8M

Select item 1154656018.

scDOT: optimal transport for mapping senescent cells in spatial transcriptomics

Nam D. Nguyen, Lorena Rosas, Timur Khaliullin, Peiran Jiang, Euxhen Hasanaj, Jose A. Ovando-Ricardez, Marta Bueno, Irfan Rahman, Gloria S. Pryhuber, Dongmei Li, Qin Ma, Toren Finkel, Melanie Königshoff, Oliver Eickelberg, Mauricio Rojas, Ana L. Mora, Jose Lugo-Martinez, Ziv Bar-Joseph

Genome Biol. 2024; 25: 288. Published online 2024 Nov 8. doi: 10.1186/s13059-024-03426-0

PMCID:: PMC11546560

Abstract Article PDF–26M

Select item 1154573919.

GraphPCA: a fast and interpretable dimension reduction algorithm for spatial transcriptomics data

Jiyuan Yang, Lu Wang, Lin Liu, Xiaoqi Zheng

Genome Biol. 2024; 25: 287. Published online 2024 Nov 7. doi: 10.1186/s13059-024-03429-x

PMCID:: PMC11545739

Abstract Article PDF–3.6M

Select item 1153337920.

TDFPS-Designer: an efficient toolkit for barcode design and selection in nanopore sequencing

Junhai Qi, Zhengyi Li, Yao-zhong Zhang, Guojun Li, Xin Gao, Renmin Han

Genome Biol. 2024; 25: 285. Published online 2024 Nov 4. doi: 10.1186/s13059-024-03423-3

PMCID:: PMC11533379

Abstract Article PDF–4.1M

<< First< Prev

Page of 321

Next >Last >>

PMC

Result Filters

Article attributes

Text availability

Publication date

Custom date range

Research Funder

Additional filters

Display Settings:

Send to:

PMC Full-Text Search Results

Items: 1 to 20 of 6409

Display Settings:

Send to:

Supplemental Content

Find related data

Search details

Recent activity