[dbsnp-announce] dbSNP Build 138 Release Phase III: Mouse, Arabidopsis, Fruitfly, Bee, and Nematode

Public announcements regarding dbSNP dbsnp-announce at ncbi.nlm.nih.gov
Thu Aug 15 15:54:31 EDT 2013


Build Summary by Organism
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organism:	Mus musculus		
tax_id:	10090		
Assembly:	GRCm38.p1 (GCF_000001635.21)		
Annotation:	Mus musculus Annotation Release 103 (GCF_000296565.1)		
total_ss_cnt:	122723771		
total_rs_cnt:	71105894		
new_ss_cnt:	5240636		
new_rs_cnt:	1069044		
FTP:	ftp://ftp.ncbi.nih.gov/snp/organisms/mouse_10090		
Entrez:	http://www.ncbi.nlm.nih.gov/snp/?term=txid10090		
---------------------------------------------------------------------------------------------------------------------			
organism:	Arabidopsis thaliana		
tax_id:	3702		
Assembly:	TAIR10 (GCF_000001735.3)		
Annotation:	Arabidopsis thaliana Annotation Release 101 (GCF_000003475.2)		
total_ss_cnt:	1163172		
total_rs_cnt:	1069597		
new_ss_cnt:	1162871		
new_rs_cnt:	1069296		
FTP:	ftp://ftp.ncbi.nih.gov/snp/organisms/arabidopsis_3702		
Entrez:	http://www.ncbi.nlm.nih.gov/snp/?term=txid3702		
---------------------------------------------------------------------------------------------------------------------			
organism:	Apis mellifera		
tax_id:	7460		
Assembly:	Amel_4.5 (GCF_000002195.4)		
Annotation:	Apis mellifera Annotation Release 101 (GCF_000194595.1)		
total_ss_cnt:	1121589		
total_rs_cnt:	1119078		
new_ss_cnt:	1536		
new_rs_cnt:	995		
FTP:	ftp://ftp.ncbi.nih.gov/snp/organisms/bee_7460		
Entrez:	http://www.ncbi.nlm.nih.gov/snp/?term=txid7460		
---------------------------------------------------------------------------------------------------------------------			
organism:	Caenorhabditis elegans		
tax_id:	6239		
Assembly:	WS195 (GCF_000002985.4)		
Annotation:	Caenorhabditis elegans Annotation Release 101 (GCF_000006465.3)		
total_ss_cnt:	308165		
total_rs_cnt:	192044		
new_ss_cnt:	-40272*		
new_rs_cnt:	-139392*		
FTP:	ftp://ftp.ncbi.nih.gov/snp/organisms/nematode_6239		
Entrez:	http://www.ncbi.nlm.nih.gov/snp/?term=txid6239		
*Decreased due to submission withdrawn.		
---------------------------------------------------------------------------------------------------------------------		
organism:	Oryza sativa		
tax_id:	4530		
Assembly:	Build_4.0 (GCF_000005425.2)		
Annotation:	Oryza sativa Annotation Release 100 (GCF_000234515.1)		
total_ss_cnt:	12571151		
total_rs_cnt:	10966784		
new_ss_cnt:	6698845		
new_rs_cnt:	5607215		
FTP:	ftp://ftp.ncbi.nih.gov/snp/organisms/rice_4530		
Entrez:	http://www.ncbi.nlm.nih.gov/snp/?term=txid4530	
---------------------------------------------------------------------------------------------------------------------

Updates:
*	Entrez search for Reference SNP (RS) with the 'rs' prefix (ie. rs328) has been restored.   Searching can also be done without the 'rs' prefix (ie. 328).
*	The human b138_MapLink.bcp.gz file on the FTP site has been updated to fix the strand orientation for 66K  rs.   The reported NM allele was wrong when rs and mrna are both in reverse orientationto the genome.
ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/database/organism_data/b138_MapLink.bcp.gz
	



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