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  1. Arvidson R, Kaiser M, Lee SS, Urenda JP, Dail C, Mohammed H, Nolan C, Pan S, Stajich JE, Libersat F, Adams ME. Parasitoid Jewel Wasp Mounts Multipronged Neurochemical Attack to Hijack a Host Brain. Mol Cell Proteomics. 2019 Jan;18(1):99-114. doi: 10.1074/mcp.RA118.000908. Epub 2018 Oct 6. PubMed PMID: 30293061; PubMed Central PMCID: PMC6317478.
  2. Romsdahl J, Blachowicz A, Chiang AJ, Chiang YM, Masonjones S, Yaegashi J, Countryman S, Karouia F, Kalkum M, Stajich JE, Venkateswaran K, Wang CCC. International Space Station conditions alter genomics, proteomics, and metabolomics in Aspergillus nidulans. Appl Microbiol Biotechnol. 2018 Dec 12;. doi: 10.1007/s00253-018-9525-0. [Epub ahead of print] PubMed PMID: 30539259.
  3. Chang Y, Desirò A, Na H, Sandor L, Lipzen A, Clum A, Barry K, Grigoriev IV, Martin FM, Stajich JE, Smith ME, Bonito G, Spatafora JW. Phylogenomics of Endogonaceae and evolution of mycorrhizas within Mucoromycota. New Phytol. 2018 Nov 28;. doi: 10.1111/nph.15613. [Epub ahead of print] PubMed PMID: 30485448.
  4. Demers EG, Biermann AR, Masonjones S, Crocker AW, Ashare A, Stajich JE, Hogan DA. Evolution of drug resistance in an antifungal-naive chronic Candida lusitaniae infection. Proc Natl Acad Sci U S A. 2018 Nov 20;115(47):12040-12045. doi: 10.1073/pnas.1807698115. Epub 2018 Nov 2. PubMed PMID: 30389707; PubMed Central PMCID: PMC6255150.
  5. Arnesen JA, Małagocka J, Gryganskyi A, Grigoriev IV, Voigt K, Stajich JE, De Fine Licht HH. Early Diverging Insect-Pathogenic Fungi of the Order Entomophthorales Possess Diverse and Unique Subtilisin-Like Serine Proteases. G3 (Bethesda). 2018 Oct 3;8(10):3311-3319. doi: 10.1534/g3.118.200656. PubMed PMID: 30111619; PubMed Central PMCID: PMC6169396.
  6. Romsdahl J, Blachowicz A, Chiang AJ, Singh N, Stajich JE, Kalkum M, Venkateswaran K, Wang CCC. Characterization of Aspergillus niger Isolated from the International Space Station. mSystems. 2018 Sep-Oct;3(5). doi: 10.1128/mSystems.00112-18. eCollection 2018 Sep-Oct. PubMed PMID: 30246146; PubMed Central PMCID: PMC6143729.
  7. Song Z, Stajich JE, Xie Y, Liu X, He Y, Chen J, Hicks GR, Wang G. Comparative analysis reveals unexpected genome features of newly isolated Thraustochytrids strains: on ecological function and PUFAs biosynthesis. BMC Genomics. 2018 Jul 17;19(1):541. doi: 10.1186/s12864-018-4904-6. PubMed PMID: 30016947; PubMed Central PMCID: PMC6050695.
  8. Coleine C, Stajich JE, Zucconi L, Onofri S, Pombubpa N, Egidi E, Franks A, Buzzini P, Selbmann L. Antarctic Cryptoendolithic Fungal Communities Are Highly Adapted and Dominated by Lecanoromycetes and Dothideomycetes. Front Microbiol. 2018;9:1392. doi: 10.3389/fmicb.2018.01392. eCollection 2018. PubMed PMID: 30008702; PubMed Central PMCID: PMC6033990.
  9. Coleine C, Zucconi L, Onofri S, Pombubpa N, Stajich JE, Selbmann L. Sun Exposure Shapes Functional Grouping of Fungi in Cryptoendolithic Antarctic Communities. Life (Basel). 2018 Jun 2;8(2). doi: 10.3390/life8020019. PubMed PMID: 29865244; PubMed Central PMCID: PMC6027399.
  10. Gryganskyi AP, Golan J, Dolatabadi S, Mondo S, Robb S, Idnurm A, Muszewska A, Steczkiewicz K, Masonjones S, Liao HL, Gajdeczka MT, Anike F, Vuek A, Anishchenko IM, Voigt K, de Hoog GS, Smith ME, Heitman J, Vilgalys R, Stajich JE. Phylogenetic and Phylogenomic Definition of Rhizopus Species. G3 (Bethesda). 2018 May 31;8(6):2007-2018. doi: 10.1534/g3.118.200235. PubMed PMID: 29674435; PubMed Central PMCID: PMC5982828.
  11. Gostinčar C, Stajich JE, Zupančič J, Zalar P, Gunde-Cimerman N. Genomic evidence for intraspecific hybridization in a clonal and extremely halotolerant yeast. BMC Genomics. 2018 May 15;19(1):364. doi: 10.1186/s12864-018-4751-5. PubMed PMID: 29764372; PubMed Central PMCID: PMC5952469.
  12. Wang Y, Stata M, Wang W, Stajich JE, White MM, Moncalvo JM. Comparative Genomics Reveals the Core Gene Toolbox for the Fungus-Insect Symbiosis. MBio. 2018 May 15;9(3). doi: 10.1128/mBio.00636-18. PubMed PMID: 29764946; PubMed Central PMCID: PMC5954228.
  13. Collins CG, Stajich JE, Weber SE, Pombubpa N, Diez JM. Shrub range expansion alters diversity and distribution of soil fungal communities across an alpine elevation gradient. Mol Ecol. 2018 May;27(10):2461-2476. doi: 10.1111/mec.14694. Epub 2018 May 10. PubMed PMID: 29675967.
  14. Cissé OH, Ma L, Wei Huang D, Khil PP, Dekker JP, Kutty G, Bishop L, Liu Y, Deng X, Hauser PM, Pagni M, Hirsch V, Lempicki RA, Stajich JE, Cuomo CA, Kovacs JA. Comparative Population Genomics Analysis of the Mammalian Fungal Pathogen Pneumocystis. MBio. 2018 May 8;9(3). doi: 10.1128/mBio.00381-18. PubMed PMID: 29739910; PubMed Central PMCID: PMC5941068.
  15. Beaudet D, Chen ECH, Mathieu S, Yildirir G, Ndikumana S, Dalpé Y, Séguin S, Farinelli L, Stajich JE, Corradi N. Ultra-low input transcriptomics reveal the spore functional content and phylogenetic affiliations of poorly studied arbuscular mycorrhizal fungi. DNA Res. 2018 Apr 1;25(2):217-227. doi: 10.1093/dnares/dsx051. PubMed PMID: 29211832; PubMed Central PMCID: PMC5909441.
  16. Kirkland TN, Muszewska A, Stajich JE. Analysis of Transposable Elements in Coccidioides Species. J Fungi (Basel). 2018 Jan 19;4(1). doi: 10.3390/jof4010013. PubMed PMID: 29371508; PubMed Central PMCID: PMC5872316.
  17. Leonard G, Labarre A, Milner DS, Monier A, Soanes D, Wideman JG, Maguire F, Stevens S, Sain D, Grau-Bové X, Sebé-Pedrós A, Stajich JE, Paszkiewicz K, Brown MW, Hall N, Wickstead B, Richards TA. Comparative genomic analysis of the 'pseudofungus' Hyphochytrium catenoides. Open Biol. 2018 Jan;8(1). doi: 10.1098/rsob.170184. PubMed PMID: 29321239; PubMed Central PMCID: PMC5795050.
  18. Lu L, Chen J, Robb SMC, Okumoto Y, Stajich JE, Wessler SR. Tracking the genome-wide outcomes of a transposable element burst over decades of amplification. Proc Natl Acad Sci U S A. 2017 Dec 5;114(49):E10550-E10559. doi: 10.1073/pnas.1716459114. Epub 2017 Nov 20. PubMed PMID: 29158416; PubMed Central PMCID: PMC5724284.
  19. Aryal SK, Carter-House D, Stajich JE, Dillman AR. Microbial associates of the southern mole cricket (Scapteriscus borellii) are highly pathogenic. J Invertebr Pathol. 2017 Nov;150:54-62. doi: 10.1016/j.jip.2017.09.008. Epub 2017 Sep 12. PubMed PMID: 28916147.
  20. Park SY, Scranton MA, Stajich JE, Yee A, Walling LL. Chlorophyte aspartyl aminopeptidases: Ancient origins, expanded families, new locations, and secondary functions. PLoS One. 2017;12(10):e0185492. doi: 10.1371/journal.pone.0185492. eCollection 2017. PubMed PMID: 29023459; PubMed Central PMCID: PMC5638241.
  21. Spatafora JW, Aime MC, Grigoriev IV, Martin F, Stajich JE, Blackwell M. The Fungal Tree of Life: from Molecular Systematics to Genome-Scale Phylogenies. Microbiol Spectr. 2017 Sep;5(5). doi: 10.1128/microbiolspec.FUNK-0053-2016. Review. PubMed PMID: 28917057.
  22. Torres-Cruz TJ, Billingsley Tobias TL, Almatruk M, Hesse CN, Kuske CR, Desirò A, Benucci GMN, Bonito G, Stajich JE, Dunlap C, Arnold AE, Porras-Alfaro A. Bifiguratus adelaidae, gen. et sp. nov., a new member of Mucoromycotina in endophytic and soil-dwelling habitats. Mycologia. 2017 May-Jun;109(3):363-378. doi: 10.1080/00275514.2017.1364958. Epub 2017 Aug 8. PubMed PMID: 28876195.
  23. Coleine C, Masonjones S, Selbmann L, Zucconi L, Onofri S, Pacelli C, Stajich JE. Draft Genome Sequences of the Antarctic Endolithic Fungi Rachicladosporium antarcticum CCFEE 5527 and Rachicladosporium sp. CCFEE 5018. Genome Announc. 2017 Jul 6;5(27). doi: 10.1128/genomeA.00397-17. PubMed PMID: 28684563; PubMed Central PMCID: PMC5502844.
  24. Sinha S, Flibotte S, Neira M, Formby S, Plemenitaš A, Cimerman NG, Lenassi M, Gostinčar C, Stajich JE, Nislow C. Insight into the Recent Genome Duplication of the Halophilic Yeast Hortaea werneckii: Combining an Improved Genome with Gene Expression and Chromatin Structure. G3 (Bethesda). 2017 Jul 5;7(7):2015-2022. doi: 10.1534/g3.117.040691. PubMed PMID: 28500048; PubMed Central PMCID: PMC5499112.
  25. Stajich JE. Fungal Genomes and Insights into the Evolution of the Kingdom. Microbiol Spectr. 2017 Jul;5(4). doi: 10.1128/microbiolspec.FUNK-0055-2016. PubMed PMID: 28820125; PubMed Central PMCID: PMC6078396.
  26. Mondo SJ, Dannebaum RO, Kuo RC, Louie KB, Bewick AJ, LaButti K, Haridas S, Kuo A, Salamov A, Ahrendt SR, Lau R, Bowen BP, Lipzen A, Sullivan W, Andreopoulos BB, Clum A, Lindquist E, Daum C, Northen TR, Kunde-Ramamoorthy G, Schmitz RJ, Gryganskyi A, Culley D, Magnuson J, James TY, O'Malley MA, Stajich JE, Spatafora JW, Visel A, Grigoriev IV. Widespread adenine N6-methylation of active genes in fungi. Nat Genet. 2017 Jun;49(6):964-968. doi: 10.1038/ng.3859. Epub 2017 May 8. PubMed PMID: 28481340.
  27. Ahrendt SR, Medina EM, Chang CA, Stajich JE. Exploring the binding properties and structural stability of an opsin in the chytrid Spizellomyces punctatus using comparative and molecular modeling. PeerJ. 2017;5:e3206. doi: 10.7717/peerj.3206. eCollection 2017. PubMed PMID: 28462022; PubMed Central PMCID: PMC5410147.
  28. Nguyen TA, Cissé OH, Yun Wong J, Zheng P, Hewitt D, Nowrousian M, Stajich JE, Jedd G. Innovation and constraint leading to complex multicellularity in the Ascomycota. Nat Commun. 2017 Feb 8;8:14444. doi: 10.1038/ncomms14444. PubMed PMID: 28176784; PubMed Central PMCID: PMC5309816.
  29. Chen J, Wrightsman TR, Wessler SR, Stajich JE. RelocaTE2: a high resolution transposable element insertion site mapping tool for population resequencing. PeerJ. 2017;5:e2942. doi: 10.7717/peerj.2942. eCollection 2017. PubMed PMID: 28149701; PubMed Central PMCID: PMC5274521.
  30. Spatafora JW, Chang Y, Benny GL, Lazarus K, Smith ME, Berbee ML, Bonito G, Corradi N, Grigoriev I, Gryganskyi A, James TY, O'Donnell K, Roberson RW, Taylor TN, Uehling J, Vilgalys R, White MM, Stajich JE. A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data. Mycologia. 2016 Sep;108(5):1028-1046. doi: 10.3852/16-042. PubMed PMID: 27738200; PubMed Central PMCID: PMC6078412.
  31. Stajich JE. Fungal Evolution: Mucor and Phycomyces See Double. Curr Biol. 2016 Aug 22;26(16):R775-7. doi: 10.1016/j.cub.2016.06.049. PubMed PMID: 27554660.
  32. Castanera R, López-Varas L, Borgognone A, LaButti K, Lapidus A, Schmutz J, Grimwood J, Pérez G, Pisabarro AG, Grigoriev IV, Stajich JE, Ramírez L. Transposable Elements versus the Fungal Genome: Impact on Whole-Genome Architecture and Transcriptional Profiles. PLoS Genet. 2016 Jun;12(6):e1006108. doi: 10.1371/journal.pgen.1006108. eCollection 2016 Jun. PubMed PMID: 27294409; PubMed Central PMCID: PMC4905642.
  33. U'Ren JM, Miadlikowska J, Zimmerman NB, Lutzoni F, Stajich JE, Arnold AE. Contributions of North American endophytes to the phylogeny, ecology, and taxonomy of Xylariaceae (Sordariomycetes, Ascomycota). Mol Phylogenet Evol. 2016 May;98:210-32. doi: 10.1016/j.ympev.2016.02.010. Epub 2016 Feb 20. PubMed PMID: 26903035.
  34. Lee MJ, Geller AM, Bamford NC, Liu H, Gravelat FN, Snarr BD, Le Mauff F, Chabot J, Ralph B, Ostapska H, Lehoux M, Cerone RP, Baptista SD, Vinogradov E, Stajich JE, Filler SG, Howell PL, Sheppard DC. Deacetylation of Fungal Exopolysaccharide Mediates Adhesion and Biofilm Formation. MBio. 2016 Apr 5;7(2):e00252-16. doi: 10.1128/mBio.00252-16. PubMed PMID: 27048799; PubMed Central PMCID: PMC4817252.
  35. de Man TJ, Stajich JE, Kubicek CP, Teiling C, Chenthamara K, Atanasova L, Druzhinina IS, Levenkova N, Birnbaum SS, Barribeau SM, Bozick BA, Suen G, Currie CR, Gerardo NM. Small genome of the fungus Escovopsis weberi, a specialized disease agent of ant agriculture. Proc Natl Acad Sci U S A. 2016 Mar 29;113(13):3567-72. doi: 10.1073/pnas.1518501113. Epub 2016 Mar 14. PubMed PMID: 26976598; PubMed Central PMCID: PMC4822581.
  36. Momany M, Di Pietro A, Alexander WG, Barker BM, Harb OS, Kamoun S, Martin F, Pires JC, Stajich JE, Thomma BP, Unruh S. Meeting Report: Fungal Genomics Meets Social Media: Highlights of the 28th Fungal Genetics Conference at Asilomar. G3 (Bethesda). 2015 Dec;5(12):2523-5. PubMed PMID: 27034999; PubMed Central PMCID: PMC4683624.
  37. Pieuchot L, Lai J, Loh RA, Leong FY, Chiam KH, Stajich J, Jedd G. Cellular Subcompartments through Cytoplasmic Streaming. Dev Cell. 2015 Aug 24;34(4):410-20. doi: 10.1016/j.devcel.2015.07.017. PubMed PMID: 26305593.
  38. Wang Y, Smith KM, Taylor JW, Freitag M, Stajich JE. Endogenous Small RNA Mediates Meiotic Silencing of a Novel DNA Transposon. G3 (Bethesda). 2015 Jun 23;5(10):1949-60. doi: 10.1534/g3.115.017921. PubMed PMID: 26109355; PubMed Central PMCID: PMC4592977.
  39. Mélida H, Sain D, Stajich JE, Bulone V. Deciphering the uniqueness of Mucoromycotina cell walls by combining biochemical and phylogenomic approaches. Environ Microbiol. 2015 May;17(5):1649-62. doi: 10.1111/1462-2920.12601. Epub 2014 Sep 22. PubMed PMID: 25143134.
  40. Collins RA, Stajich JE, Field DJ, Olive JE, DeAbreu DM. The low information content of Neurospora splicing signals: implications for RNA splicing and intron origin. RNA. 2015 May;21(5):997-1004. doi: 10.1261/rna.047985.114. Epub 2015 Mar 24. PubMed PMID: 25805857; PubMed Central PMCID: PMC4408805.
  41. Willger SD, Liu Z, Olarte RA, Adamo ME, Stajich JE, Myers LC, Kettenbach AN, Hogan DA. Analysis of the Candida albicans Phosphoproteome. Eukaryot Cell. 2015 May;14(5):474-85. doi: 10.1128/EC.00011-15. Epub 2015 Mar 6. PubMed PMID: 25750214; PubMed Central PMCID: PMC4421004.
  42. Liu P, Stajich JE. Characterization of the Carbohydrate Binding Module 18 gene family in the amphibian pathogen Batrachochytrium dendrobatidis. Fungal Genet Biol. 2015 Apr;77:31-9. doi: 10.1016/j.fgb.2015.03.003. Epub 2015 Mar 25. PubMed PMID: 25819009.
  43. Kennedy P, Stajich J. Twenty-first century mycology: a diverse, collaborative, and highly relevant science. New Phytol. 2015 Jan;205(1):23-6. doi: 10.1111/nph.13165. PubMed PMID: 25427217.
  44. Teixeira MM, de Almeida LG, Kubitschek-Barreira P, Alves FL, Kioshima ES, Abadio AK, Fernandes L, Derengowski LS, Ferreira KS, Souza RC, Ruiz JC, de Andrade NC, Paes HC, Nicola AM, Albuquerque P, Gerber AL, Martins VP, Peconick LD, Neto AV, Chaucanez CB, Silva PA, Cunha OL, de Oliveira FF, dos Santos TC, Barros AL, Soares MA, de Oliveira LM, Marini MM, Villalobos-Duno H, Cunha MM, de Hoog S, da Silveira JF, Henrissat B, Niño-Vega GA, Cisalpino PS, Mora-Montes HM, Almeida SR, Stajich JE, Lopes-Bezerra LM, Vasconcelos AT, Felipe MS. Comparative genomics of the major fungal agents of human and animal Sporotrichosis: Sporothrix schenckii and Sporothrix brasiliensis. BMC Genomics. 2014 Oct 29;15:943. doi: 10.1186/1471-2164-15-943. PubMed PMID: 25351875; PubMed Central PMCID: PMC4226871.
  45. Ouyang S, Park G, Atamian HS, Han CS, Stajich JE, Kaloshian I, Borkovich KA. MicroRNAs suppress NB domain genes in tomato that confer resistance to Fusarium oxysporum. PLoS Pathog. 2014 Oct;10(10):e1004464. doi: 10.1371/journal.ppat.1004464. eCollection 2014 Oct. PubMed PMID: 25330340; PubMed Central PMCID: PMC4199772.
  46. Treseder KK, Maltz MR, Hawkins BA, Fierer N, Stajich JE, McGuire KL. Evolutionary histories of soil fungi are reflected in their large-scale biogeography. Ecol Lett. 2014 Sep;17(9):1086-93. doi: 10.1111/ele.12311. Epub 2014 Jun 9. PubMed PMID: 24912000.
  47. Inglis DO, Skrzypek MS, Liaw E, Moktali V, Sherlock G, Stajich JE. Literature-based gene curation and proposed genetic nomenclature for cryptococcus. Eukaryot Cell. 2014 Jul;13(7):878-83. doi: 10.1128/EC.00083-14. Epub 2014 May 9. PubMed PMID: 24813190; PubMed Central PMCID: PMC4135733.
  48. Janbon G, Ormerod KL, Paulet D, Byrnes EJ 3rd, Yadav V, Chatterjee G, Mullapudi N, Hon CC, Billmyre RB, Brunel F, Bahn YS, Chen W, Chen Y, Chow EW, Coppée JY, Floyd-Averette A, Gaillardin C, Gerik KJ, Goldberg J, Gonzalez-Hilarion S, Gujja S, Hamlin JL, Hsueh YP, Ianiri G, Jones S, Kodira CD, Kozubowski L, Lam W, Marra M, Mesner LD, Mieczkowski PA, Moyrand F, Nielsen K, Proux C, Rossignol T, Schein JE, Sun S, Wollschlaeger C, Wood IA, Zeng Q, Neuvéglise C, Newlon CS, Perfect JR, Lodge JK, Idnurm A, Stajich JE, Kronstad JW, Sanyal K, Heitman J, Fraser JA, Cuomo CA, Dietrich FS. Analysis of the genome and transcriptome of Cryptococcus neoformans var. grubii reveals complex RNA expression and microevolution leading to virulence attenuation. PLoS Genet. 2014 Apr;10(4):e1004261. doi: 10.1371/journal.pgen.1004261. eCollection 2014 Apr. PubMed PMID: 24743168; PubMed Central PMCID: PMC3990503.
  49. Sachs JL, Skophammer RG, Bansal N, Stajich JE. Evolutionary origins and diversification of proteobacterial mutualists. Proc Biol Sci. 2014 Jan 22;281(1775):20132146. doi: 10.1098/rspb.2013.2146. Print 2014 Jan 22. PubMed PMID: 24285193; PubMed Central PMCID: PMC3866395.
  50. Glass EM, Dribinsky Y, Yilmaz P, Levin H, Van Pelt R, Wendel D, Wilke A, Eisen JA, Huse S, Shipanova A, Sogin M, Stajich J, Knight R, Meyer F, Schriml LM. MIxS-BE: a MIxS extension defining a minimum information standard for sequence data from the built environment. ISME J. 2014 Jan;8(1):1-3. doi: 10.1038/ismej.2013.176. Epub 2013 Oct 24. PubMed PMID: 24152717; PubMed Central PMCID: PMC3869023.