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  1. Brennan-Krohn T, Kirby JE. Antimicrobial Synergy Testing by the Inkjet Printer-Assisted Automated Checkerboard Array and the Manual Time-Kill Method. Journal of visualized experiments : JoVE. Forthcoming;
  2. Riedel S, Vijayakumar D, Berg G, Kang AD, Smith KP, Kirby JE. Evaluation of apramycin against spectinomycin-resistant and -susceptible strains of Neisseria gonorrhoeae. J Antimicrob Chemother. 2019 Jan 27;. doi: 10.1093/jac/dkz012. [Epub ahead of print] PubMed PMID: 30689929.
  3. Kang YS, Brown DA, Kirby JE. Brucella neotomae Recapitulates Attributes of Zoonotic Human Disease in a Murine Infection Model. Infect Immun. 2019 Jan;87(1). doi: 10.1128/IAI.00255-18. Print 2019 Jan. PubMed PMID: 30373892; PubMed Central PMCID: PMC6300638.
  4. Brennan-Krohn T, Pironti A, Kirby JE. Synergistic Activity of Colistin-Containing Combinations against Colistin-Resistant Enterobacteriaceae. Antimicrob Agents Chemother. 2018 Oct;62(10). doi: 10.1128/AAC.00873-18. Print 2018 Oct. PubMed PMID: 30061285; PubMed Central PMCID: PMC6153801.
  5. Truelson KA, Brennan-Krohn T, Smith KP, Kirby JE. Evaluation of apramycin activity against methicillin-resistant, methicillin-sensitive, and vancomycin-intermediate Staphylococcus aureus clinical isolates. Diagn Microbiol Infect Dis. 2018 Oct;92(2):168-171. doi: 10.1016/j.diagmicrobio.2018.05.018. Epub 2018 May 29. PubMed PMID: 29934071; PubMed Central PMCID: PMC6131043.
  6. Smith KP, Kirby JE. The Inoculum Effect in the Era of Multidrug Resistance: Minor Differences in Inoculum Have Dramatic Effect on MIC Determination. Antimicrob Agents Chemother. 2018 Aug;62(8). doi: 10.1128/AAC.00433-18. Print 2018 Aug. PubMed PMID: 29784837; PubMed Central PMCID: PMC6105823.
  7. Gite S, Archambault D, Cappillino MP, Cunha D, Dorich V, Shatova T, Tempesta A, Walsh B, Walsh JA, Williams A, Kirby JE, Bowers J, Straus D. A Rapid, Accurate, Single Molecule Counting Method Detects Clostridium difficile Toxin B in Stool Samples. Sci Rep. 2018 May 30;8(1):8364. doi: 10.1038/s41598-018-26353-0. PubMed PMID: 29849171; PubMed Central PMCID: PMC5976643.
  8. Kang AD, Smith KP, Berg AH, Truelson KA, Eliopoulos GM, McCoy C, Kirby JE. Efficacy of Apramycin against Multidrug-Resistant Acinetobacter baumannii in the Murine Neutropenic Thigh Model. Antimicrob Agents Chemother. 2018 Apr;62(4). doi: 10.1128/AAC.02585-17. Print 2018 Apr. PubMed PMID: 29339396; PubMed Central PMCID: PMC5913965.
  9. Smith KP, Kang AD, Kirby JE. Automated Interpretation of Blood Culture Gram Stains by Use of a Deep Convolutional Neural Network. J Clin Microbiol. 2018 Mar;56(3). doi: 10.1128/JCM.01521-17. Print 2018 Mar. PubMed PMID: 29187563; PubMed Central PMCID: PMC5824030.
  10. Brennan-Krohn T, Yoon E, Nishino M, Kirby JE, Riedel S. Arthroconidia in lung tissue: an unusual histopathological finding in pulmonary coccidioidomycosis. Hum Pathol. 2018 Jan;71:55-59. doi: 10.1016/j.humpath.2017.07.013. Epub 2017 Aug 1. PubMed PMID: 28778515; PubMed Central PMCID: PMC5936468.
  11. Smith KP, Richmond DL, Brennan-Krohn T, Elliott HL, Kirby JE. Development of MAST: A Microscopy-Based Antimicrobial Susceptibility Testing Platform. SLAS Technol. 2017 Dec;22(6):662-674. doi: 10.1177/2472630317727721. Epub 2017 Aug 24. PubMed PMID: 28837780; PubMed Central PMCID: PMC5744253.
  12. Sabhachandani P, Sarkar S, Zuchhi PC, Whitfield BA, Kirby JE, Hirsch EB, Konry T. Integrated microfluidic platform for rapid antimicrobial susceptibility testing and bacterial growth analysis using bead-based biosensors via fluorescence imaging. Microchimica Acta. 2017 December; 184(12):4619-4628. doi: 10.1007/s00604-017-2492-9.
  13. Brennan-Krohn T, Truelson KA, Smith KP, Kirby JE. Screening for synergistic activity of antimicrobial combinations against carbapenem-resistant Enterobacteriaceae using inkjet printer-based technology. J Antimicrob Chemother. 2017 Oct 1;72(10):2775-2781. doi: 10.1093/jac/dkx241. PubMed PMID: 29091221; PubMed Central PMCID: PMC5890738.
  14. Brennan-Krohn T, Smith KP, Kirby JE. The Poisoned Well: Enhancing the Predictive Value of Antimicrobial Susceptibility Testing in the Era of Multidrug Resistance. J Clin Microbiol. 2017 Aug;55(8):2304-2308. doi: 10.1128/JCM.00511-17. Epub 2017 May 3. PubMed PMID: 28468856; PubMed Central PMCID: PMC5527407.
  15. Chen A, Smith KP, Whitfield BA, Zucchi PC, Lasco TM, Bias TE, Kirby JE, Hirsch EB. Activity of minocycline against Klebsiella pneumoniae carbapenemase (KPC)-producing Enterobacteriaceae clinical isolates, with comparison to doxycycline and tigecycline. Diagn Microbiol Infect Dis. 2017 Aug;88(4):365-367. doi: 10.1016/j.diagmicrobio.2017.05.004. Epub 2017 May 11. PubMed PMID: 28535946.
  16. Kang AD, Smith KP, Eliopoulos GM, Berg AH, McCoy C, Kirby JE. Invitro Apramycin Activity against multidrug-resistant Acinetobacter baumannii and Pseudomonas aeruginosa. Diagn Microbiol Infect Dis. 2017 Jun;88(2):188-191. doi: 10.1016/j.diagmicrobio.2017.03.006. Epub 2017 Mar 16. PubMed PMID: 28341099.
  17. Kang YS, Kirby JE. Promotion and Rescue of Intracellular Brucella neotomae Replication during Coinfection with Legionella pneumophila. Infect Immun. 2017 May;85(5). doi: 10.1128/IAI.00991-16. Print 2017 May. PubMed PMID: 28264909; PubMed Central PMCID: PMC5400850.
  18. Tsang J. Bacterial plasmid addiction systems and their implications for antibiotic drug development. Postdoc J. 2017 May;5(5):3-9. PubMed PMID: 28781980; PubMed Central PMCID: PMC5542005.
  19. Kirby JE, Branch-Elliman W, LaSalvia MT, Longhi L, MacKechnie M, Urman G, Baldini LM, Muriel FR, Sullivan B, Yassa DS, Gold HS, Wagner TK, Diekema DJ, Wright SB. Investigation of a Candida guilliermondii Pseudo-outbreak Reveals a Novel Source of Laboratory Contamination. J Clin Microbiol. 2017 Apr;55(4):1080-1089. doi: 10.1128/JCM.02336-16. Epub 2017 Jan 18. PubMed PMID: 28100597; PubMed Central PMCID: PMC5377835.
  20. Bryan AW Jr, Qian Q, Kirby JE. Photo Quiz: A Man with Fever and Headache. J Clin Microbiol. 2017 Feb;55(2):351. doi: 10.1128/JCM.00193-15. PubMed PMID: 28122992; PubMed Central PMCID: PMC5277501.
  21. Smith KP, Brennan-Krohn T, Weir S, Kirby JE. Improved Accuracy of Cefepime Susceptibility Testing for Extended-Spectrum-Beta-Lactamase-Producing Enterobacteriaceae with an On-Demand Digital Dispensing Method. J Clin Microbiol. 2017 Feb;55(2):470-478. doi: 10.1128/JCM.02128-16. Epub 2016 Nov 30. PubMed PMID: 27903600; PubMed Central PMCID: PMC5277516.
  22. Bryan AW Jr, Qian Q, Kirby JE. Answer to February 2017 Photo Quiz. J Clin Microbiol. 2017 Feb;55(2):660-661. doi: 10.1128/JCM.00194-15. PubMed PMID: 28122997; PubMed Central PMCID: PMC5277542.
  23. Cerqueira GC, Earl AM, Ernst CM, Grad YH, Dekker JP, Feldgarden M, Chapman SB, Reis-Cunha JL, Shea TP, Young S, Zeng Q, Delaney ML, Kim D, Peterson EM, O'Brien TF, Ferraro MJ, Hooper DC, Huang SS, Kirby JE, Onderdonk AB, Birren BW, Hung DT, Cosimi LA, Wortman JR, Murphy CI, Hanage WP. Multi-institute analysis of carbapenem resistance reveals remarkable diversity, unexplained mechanisms, and limited clonal outbreaks. Proc Natl Acad Sci U S A. 2017 Jan 31;114(5):1135-1140. doi: 10.1073/pnas.1616248114. Epub 2017 Jan 17. PubMed PMID: 28096418; PubMed Central PMCID: PMC5293017.
  24. Smith KP, Kirby JE. Evaluation of apramycin activity against carbapenem-resistant and -susceptible strains of Enterobacteriaceae. Diagn Microbiol Infect Dis. 2016 Dec;86(4):439-441. doi: 10.1016/j.diagmicrobio.2016.09.002. Epub 2016 Sep 8. PubMed PMID: 27745736.
  25. Chiaraviglio L, Kang YS, Kirby JE. High Throughput, Real-time, Dual-readout Testing of Intracellular Antimicrobial Activity and Eukaryotic Cell Cytotoxicity. J Vis Exp. 2016 Nov 16;(117). doi: 10.3791/54841. PubMed PMID: 27911388; PubMed Central PMCID: PMC5226247.
  26. Smith KP, Kirby JE. How inkjet printing technology can defeat multidrug-resistant pathogens. Future Microbiol. 2016 Oct;11:1375-1377. doi: 10.2217/fmb-2016-0163. Epub 2016 Oct 27. PubMed PMID: 27785916.
  27. Smith KP, Kirby JE. Verification of an Automated, Digital Dispensing Platform for At-Will Broth Microdilution-Based Antimicrobial Susceptibility Testing. J Clin Microbiol. 2016 Sep;54(9):2288-93. doi: 10.1128/JCM.00932-16. Epub 2016 Jun 22. PubMed PMID: 27335151; PubMed Central PMCID: PMC5005478.
  28. Hale AJ, LaSalvia M, Kirby JE, Kimball A, Baden R. Fatal purpura fulminans and Waterhouse-Friderichsen syndrome from fulminant Streptococcus pneumoniae sepsis in an asplenic young adult. IDCases. 2016;6:1-4. doi: 10.1016/j.idcr.2016.08.004. eCollection 2016. PubMed PMID: 27583208; PubMed Central PMCID: PMC4995527.
  29. Yang L, Kirby JE, Sunwoo H, Lee JT. Female mice lacking Xist RNA show partial dosage compensation and survive to term. Genes Dev. 2016 Aug 1;30(15):1747-60. doi: 10.1101/gad.281162.116. PubMed PMID: 27542829; PubMed Central PMCID: PMC5002979.
  30. Hale A, Kirby JE, Albrecht M. Fatal Spontaneous Clostridium bifermentans Necrotizing Endometritis: A Case Report and Literature Review of the Pathogen. Open Forum Infect Dis. 2016 Apr;3(2):ofw095. doi: 10.1093/ofid/ofw095. eCollection 2016 Apr. PubMed PMID: 27419167; PubMed Central PMCID: PMC4943541.
  31. Hirsch EB, Zucchi PC, Chen A, Raux BR, Kirby JE, McCoy C, Eliopoulos GM. Susceptibility of Multidrug-Resistant Gram-Negative Urine Isolates to Oral Antibiotics. Antimicrob Agents Chemother. 2016 May;60(5):3138-40. doi: 10.1128/AAC.02961-15. Print 2016 May. PubMed PMID: 26883704; PubMed Central PMCID: PMC4862536.
  32. Smith KP, Kirby JE. Validation of a High-Throughput Screening Assay for Identification of Adjunctive and Directly Acting Antimicrobials Targeting Carbapenem-Resistant Enterobacteriaceae. Assay Drug Dev Technol. 2016 Apr;14(3):194-206. doi: 10.1089/adt.2016.701. Epub 2016 Apr 5. PubMed PMID: 27045615; PubMed Central PMCID: PMC4841070.
  33. Qian Q, Urman G, Cederroth T, Najarian R, Kirby JE. Photo Quiz: A Man with Fever and Cough. J Clin Microbiol. 2016 Apr;54(4):825; discussion 1177. doi: 10.1128/JCM.00851-14. PubMed PMID: 27016589; PubMed Central PMCID: PMC4809913.
  34. Sells RE, Chen CA, Wong MT, Zimarowski MJ, Kirby JE, Joyce RM, Wu PA. Continuous positive airway pressure-associated cutaneous amoebiasis in an immunosuppressed patient. Br J Dermatol. 2016 Mar;174(3):625-8. doi: 10.1111/bjd.14231. Epub 2016 Jan 5. PubMed PMID: 26474324.
  35. Harris RM, Arnaout R, Koziel H, Folch E, Majid A, Kirby JE. Utility of microbiological testing of thoracic lymph nodes sampled by endobronchial ultrasound-guided transbronchial needle aspiration (EBUS-TBNA) in patients with mediastinal lymphadenopathy. Diagn Microbiol Infect Dis. 2016 Feb;84(2):170-4. doi: 10.1016/j.diagmicrobio.2015.10.013. Epub 2015 Oct 21. PubMed PMID: 26602949.
  36. Mupombwa T, Mulla BM, Kirby JE, O'Brien BM. Babesia microti infection in pregnancy mimicking HELLP syndrome. Journal of bacteriology & parasitology. 2016; 7(6). doi: 10.4172/2155-9597.1000297.
  37. Chiaraviglio L, Kirby JE. High-Throughput Intracellular Antimicrobial Susceptibility Testing of Legionella pneumophila. Antimicrob Agents Chemother. 2015 Dec;59(12):7517-29. doi: 10.1128/AAC.01248-15. Epub 2015 Sep 21. PubMed PMID: 26392509; PubMed Central PMCID: PMC4649152.
  38. Hirsch EB, Raux BR, Zucchi PC, Kim Y, McCoy C, Kirby JE, Wright SB, Eliopoulos GM. Activity of fosfomycin and comparison of several susceptibility testing methods against contemporary urine isolates. Int J Antimicrob Agents. 2015 Dec;46(6):642-7. doi: 10.1016/j.ijantimicag.2015.08.012. Epub 2015 Sep 30. PubMed PMID: 26498988.
  39. Kirby JE. Legionella and Bartonella, Reference Module in Biomedical Sciences. [Internet]. Elsevier; 2015 April. Available from: DOI: 10.1016/B978-0-12-801238-3.02296-0.
  40. Harris RM, Stillman IE, Goldsmith JD, Qian Q, Kirby JE. Pathological rib fracture and soft tissue mass simulating malignancy--Cryptococcus, an unsuspected culprit. Diagn Microbiol Infect Dis. 2015 Mar;81(3):189-91. doi: 10.1016/j.diagmicrobio.2014.10.010. Epub 2014 Oct 31. PubMed PMID: 25583128.
  41. Chiaraviglio L, Kirby JE. Evaluation of impermeant, DNA-binding dye fluorescence as a real-time readout of eukaryotic cell toxicity in a high throughput screening format. Assay Drug Dev Technol. 2014 May;12(4):219-28. doi: 10.1089/adt.2014.577. PubMed PMID: 24831788; PubMed Central PMCID: PMC4026211.
  42. Cheng A, Kirby JE. Evaluation of the Hologic gen-probe PANTHER, APTIMA Combo 2 assay in a tertiary care teaching hospital. Am J Clin Pathol. 2014 Mar;141(3):397-403. doi: 10.1309/AJCPFQ25SQVZAWHZ. PubMed PMID: 24515768.
  43. Qian Q, Eichelberger K, Kirby JE. Rapid identification of Staphylococcus aureus directly from Bactec blood culture broth by the BinaxNOW S. aureus test. J Clin Microbiol. 2014 Jan;52(1):319-20. doi: 10.1128/JCM.02291-13. Epub 2013 Oct 23. PubMed PMID: 24153135; PubMed Central PMCID: PMC3911471.
  44. Yildirim E, Kirby JE, Brown DE, Mercier FE, Sadreyev RI, Scadden DT, Lee JT. Xist RNA is a potent suppressor of hematologic cancer in mice. Cell. 2013 Feb 14;152(4):727-42. doi: 10.1016/j.cell.2013.01.034. PubMed PMID: 23415223; PubMed Central PMCID: PMC3875356.
  45. Anguera MC, Sadreyev R, Zhang Z, Szanto A, Payer B, Sheridan SD, Kwok S, Haggarty SJ, Sur M, Alvarez J, Gimelbrant A, Mitalipova M, Kirby JE, Lee JT. Molecular signatures of human induced pluripotent stem cells highlight sex differences and cancer genes. Cell Stem Cell. 2012 Jul 6;11(1):75-90. doi: 10.1016/j.stem.2012.03.008. PubMed PMID: 22770242; PubMed Central PMCID: PMC3587778.
  46. Cheng A, Qian Q, Kirby JE. Evaluation of the Abbott RealTime CT/NG assay in comparison to the Roche Cobas Amplicor CT/NG assay. J Clin Microbiol. 2011 Apr;49(4):1294-300. doi: 10.1128/JCM.02595-10. Epub 2011 Feb 16. PubMed PMID: 21325546; PubMed Central PMCID: PMC3122843.
  47. Bieniek R, Kirby JE, Cheng A, Eichelberger K, Qian Q. Effective Use of PCR for the Detection of Cytomegalovirus Viremia and Monitoring Therapy in Immunocompromised Patients. LabMedicine. 2011; 42:339-343. doi: 10.1309/LMP4IL3XGU6MQJCE.
  48. Chiaraviglio L, Duong S, Brown DA, Birtles RJ, Kirby JE. An immunocompromised murine model of chronic Bartonella infection. Am J Pathol. 2010 Jun;176(6):2753-63. doi: 10.2353/ajpath.2010.090862. Epub 2010 Apr 15. PubMed PMID: 20395436; PubMed Central PMCID: PMC2877837.
  49. Qian Q, Venkataraman L, Kirby JE, Gold HS, Yamazumi T. Direct detection of methicillin resistance in Staphylococcus aureus in blood culture broth by use of a penicillin binding protein 2a latex agglutination test. J Clin Microbiol. 2010 Apr;48(4):1420-1. doi: 10.1128/JCM.01517-09. Epub 2010 Feb 3. PubMed PMID: 20129965; PubMed Central PMCID: PMC2849551.
  50. Qian Q, Kirby JE. Technical Advances in Laboratory Diagnosis of Fungal Infections. Journal of Microbes and Infection. 2010 March; 5(1):2-25.