Homo sapiens complex locus RSAD1, encoding radical S-adenosyl methionine domain containing 1.
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SUMMARY back to top
RefSeq annotates one representative transcript (NM included in AceView variant.a), but Homo sapiens cDNA sequences in GenBank, dbEST, Trace and SRA, filtered against clone rearrangements, coaligned on the genome and clustered in a minimal non-redundant way by the manually supervised AceView program, support at least 9 spliced variants.

AceView synopsis, each blue text links to tables and details
Note that this locus is complex: it appears to produce several proteins with no sequence overlap.
Expression: According to AceView, this gene is expressed at high level, 3.2 times the average gene in this release. The sequence of this gene is defined by 367 GenBank accessions from 322 cDNA clones, some from brain (seen 39 times), lung (23), placenta (12), breast (10), eye (10), kidney (10), cerebellum (8) and 127 other tissues. We annotate structural defects or features in 63 cDNA clones.
Alternative mRNA variants and regulation: The gene contains 17 distinct gt-ag introns. Transcription produces 12 different mRNAs, 9 alternatively spliced variants and 3 unspliced forms. There are 2 probable alternative promotors, 2 non overlapping alternative last exons and 3 validated alternative polyadenylation sites (see the diagram). The mRNAs appear to differ by truncation of the 5' end, truncation of the 3' end, presence or absence of 9 cassette exons, overlapping exons with different boundaries.
2 variants were isolated in vivo, despite the fact that they are predicted targets of nonsense mediated mRNA decay (NMD).
Efficacy of translation may be reduced by the presence of a shorter translated product (uORF) initiating at an AUG upstream of the main open reading frame (in variant bAug10).
Function:. Functionally, the gene has been proposed to participate in processes (oxidation reduction, porphyrin biosynthetic process). Proteins are expected to have molecular functions (4 iron, 4 sulfur cluster binding, coproporphyrinogen oxidase activity, metal ion binding, oxidoreductase activity) and to localize in various compartments (cytoplasm, mitochondrion, nucleus).
Protein coding potential: 8 spliced and the unspliced mRNAs putatively encode good proteins, altogether 9 different isoforms (6 complete, 1 COOH complete, 2 partial), some containing domains HemN C-terminal region, Radical SAM superfamily [Pfam]. The remaining 3 mRNA variants (1 spliced, 2 unspliced; 2 partial) appear not to encode good proteins.

Please quote: AceView: a comprehensive cDNA-supported gene and transcripts annotation, Genome Biology 2006, 7(Suppl 1):S12.
Map on chromosome 17, links to other databases and other names
Map: This gene RSAD1 maps on chromosome 17, at 17q21.33 according to Entrez Gene. In AceView, it covers 7.19 kb, from 48556156 to 48563343 (NCBI 37, August 2010), on the direct strand.
Links to: the SNP view, gene overviews from Entrez Gene 55316, GeneCards, expression data from ECgene, UniGene, molecular and other annotations from UCSC, or our GOLD analysis.
The previous AceView annotation is here.
Other names: The gene is also known as RSAD1, FLJ11164 or FLJ20975, LOC55316. It has been described as radical S-adenosyl methionine domain-containing protein 1, mitochondrial, oxygen-independent coproporphyrinogen-III oxidase-like protein RSAD1.
EC number: This gene encodes protein number: 1.3.99.-.
Closest AceView homologs in other species ?
The closest mouse gene, according to BlastP, is the AceView gene Rsad1 (e=10-48).
The closest C.elegans genes, according to BlastP, are the AceView/WormGenes pqn-5 (e=0.42), 4F830 (e=0.93), which may contain interesting functional annotation.
The closest A.thaliana gene, according to BlastP, is the AceView gene AT5G63290 (e=10-08), which may contain interesting functional annotation
RNA_seq discoveries back to top
Expression/conservation in primates tissues evaluated by cross-mapping to human. back to top
RSAD1 Gene expression in 15 primates, 16 tissues, from the NHPRTR project in sFPKM BAB SkeletalMuscle WholeBlood CHP Kidney Liver Lung Spleen CMC CMM Cerebellum HUM Brain Colon Heart LymphNode Ovary Testis JMI BoneMarrow MLM OWL PTM RMC RMI Pituitary SQM Thymus MST SMY RTL 8.19 4.10 30.6 15.3 11.6 6.65 26.6 15.3 2.70 10.1 3.82 11.6 8.78 21.6 26.6 12.4 8.19 24.8 16.4 16.4 10.1 10.1 2.52 1.35 1.18 0.96 2.35 0.89 3.57 4.71 5.04 1.91 0.96 8.78 5.04 2.70 61.1 30.6 65.5 3.57 21.6 8.78 6.65 10.1 37.6 13.3 5.40 4.10 26.6 3.10 4.10 14.3 6.21 14.3 9.41 5.79 6.21 5.79 3.10 10.8 10.1 21.6 15.3 21.6 11.6 21.6 6.65 10.8 15.3 4.10 37.6 5.79 7.64 5.79 5.40 5.40 6.65 3.10 9.41 6.65 61.1 9.41 5.40 4.71 10.1 6.21 8.19 5.40 6.21 9.41 8.19 10.1 8.78 53.2 24.8 4.71 6.65 7.64 4.39 5.40 4.71 3.10 5.04 2.52 1.35 4.39 5.04 4.10 0.96 2.05 4.10 6.21 40.3 5.79 6.65 18.8 5.40 2.90 4.10 6.65 13.3 6.21 8.19 8.19 6.21 32.8 5.79 5.40 2.52 8.78 4.10 13.3 4.71 7.64 8.19 4.10 0.68 1.45 0.96 1.45 7.13 5.40 40.3 26.6 5.04 7.64 4.10 5.04 7.64 1.91 1.55 10.8 8.78 5.40 1.55 8.19 2.90 Expression quantiles None Weak 1 2 3 4 5 6 7 8 10 20 This gene All genes log2 distributions RNA-seq gene expression profile across 16 selected tissues from the Non-Human Primates Reference Transcriptome Resource (link to NHPRTR project).
- Primates: Apes (HUM: Human (Illumina BodyMap 2), CHP: Chimpanzee), Old World monkeys (PTM: Pig-Tailed Macaque, JMI Japanese Macaque, RMI Rhesus Macaque Indian, RMC Rhesus Macaque Chinese, CMM Cynomolgus Macaque Mauritian, CMC Cynomolgus Macaque Chinese, BAB Olive Baboon, SMY Sooty Mangabey); New World monkeys (MST common Marmoset, SQM Squirrel Monkey, OWL Owl Monkey); and Lemurs (MLM Mouse Lemur, RTL Ring-Tailed Lemur).
- The level for significantly expressed genes is color coded in 8 equal sized bins (light to dark green). Light gray is for weak not-accurately measured expression (2 to 8 reads above intergenic background); dark gray for no expression or no sequence conservation (0 read in gene). The plot to the right shows the distribution of measured expression values in all tissues for all genes (blue) and for this gene (green), in Magic index = log2(1000 sFPKM).
You may also examine the strand-specific genome coverage plots on the experimental AceView/Magic hub at UCSC, by tissue or by species. Tracks may be slow to load; please reload if some tracks come up yellow-greenish, and thanks to UCSC for the great work!.
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          Complete gene on genome diagram: back to top
Please choose between the zoomable GIF version., and the HTML5/SVG version.
This diagram shows in true scale the gene on the genome, the mRNAs and the cDNA clones.
Compact gene diagram back to top
Gene RSAD1 5' 3' encoded on plus strand of chromosome 17 from 48,556,156 to 48,563,343 34707 46469 47401 67908 83135 a [NM] 34707 1100 67908 83135 b 934 1339 350 c 34707 46469 d f-u l-u i 34707 46469 301 67908 83135 e g 47 46469 j 2 h k-u 1 2kb 0 213 bp exon 213 bp exon 609 bp [gt-ag] intron 114 GenBank accessions 34593 RNA-seq supporting reads 3390 UHR pooled cells 3479 Brain 511 Blood 27110 Neuroblastoma 103 Other (also 787 Primates bodymap) 134 bp exon 117 bp [gt-ag] intron 127 GenBank accessions 46342 RNA-seq supporting reads 4947 UHR pooled cells 5361 Brain 2108 Blood 33719 Neuroblastoma 207 Other (also 2036 Primates bodymap) 205 bp exon 2006 bp [gt-ag] intron 98 GenBank accessions 47303 RNA-seq supporting reads 5126 UHR pooled cells 5355 Brain 1886 Blood 34643 Neuroblastoma 293 Other (also 1730 Primates bodymap) 366 bp exon 186 bp [gt-ag] intron 35 GenBank accessions 50627 RNA-seq supporting reads 6989 UHR pooled cells 6418 Brain 2823 Blood 34137 Neuroblastoma 260 Other (also 2151 Primates bodymap) 64 bp exon 633 bp [gt-ag] intron 37 GenBank accessions 67871 RNA-seq supporting reads 8984 UHR pooled cells 8735 Brain 3035 Blood 46849 Neuroblastoma 268 Other (also 3012 Primates bodymap) 148 bp exon 218 bp [gt-ag] intron 35 GenBank accessions 57770 RNA-seq supporting reads 7251 UHR pooled cells 7142 Brain 2623 Blood 40443 Neuroblastoma 311 Other (also 2994 Primates bodymap) 55 bp exon 681 bp [gt-ag] intron 34 GenBank accessions 83101 RNA-seq supporting reads 10811 UHR pooled cells 10091 Brain 2530 Blood 59259 Neuroblastoma 410 Other (also 3620 Primates bodymap) 104 bp exon 198 bp [gt-ag] intron 37 GenBank accessions 42734 RNA-seq supporting reads 6382 UHR pooled cells 5090 Brain 1275 Blood 29657 Neuroblastoma 330 Other (also 1366 Primates bodymap) 1232 bp exon 151 accessions, NM_018346.1 some from brain (seen 26 times) neuroblastoma cells (6) placenta (6), hippocampus (5) hypothalamus (5) capped 5' end, 59 accessions Validated 3' end, 5 accessions 1232 bp exon 161 bp exon 161 bp exon 276 bp uORF 609 bp [gt-ag] intron 114 GenBank accessions 34593 RNA-seq supporting reads 3390 UHR pooled cells 3479 Brain 511 Blood 27110 Neuroblastoma 103 Other (also 787 Primates bodymap) 134 bp exon 276 bp uORF 2328 bp [gt-ag] intron 4 GenBank accessions 1096 RNA-seq supporting reads 89 UHR pooled cells 72 Brain 22 Blood 906 Neuroblastoma 7 Other (also 29 Primates bodymap) 276 bp uORF 366 bp exon 366 bp exon 366 bp exon 186 bp [gt-ag] intron 35 GenBank accessions 50627 RNA-seq supporting reads 6989 UHR pooled cells 6418 Brain 2823 Blood 34137 Neuroblastoma 260 Other (also 2151 Primates bodymap) 64 bp exon 64 bp exon 633 bp [gt-ag] intron 37 GenBank accessions 67871 RNA-seq supporting reads 8984 UHR pooled cells 8735 Brain 3035 Blood 46849 Neuroblastoma 268 Other (also 3012 Primates bodymap) 148 bp exon 148 bp exon 218 bp [gt-ag] intron 35 GenBank accessions 57770 RNA-seq supporting reads 7251 UHR pooled cells 7142 Brain 2623 Blood 40443 Neuroblastoma 311 Other (also 2994 Primates bodymap) 55 bp exon 55 bp exon 681 bp [gt-ag] intron 34 GenBank accessions 83101 RNA-seq supporting reads 10811 UHR pooled cells 10091 Brain 2530 Blood 59259 Neuroblastoma 410 Other (also 3620 Primates bodymap) 104 bp exon 104 bp exon 198 bp [gt-ag] intron 37 GenBank accessions 42734 RNA-seq supporting reads 6382 UHR pooled cells 5090 Brain 1275 Blood 29657 Neuroblastoma 330 Other (also 1366 Primates bodymap) 49 bp exon 4 accessions, some from amygdala (seen once) cerebellum (once), large cell carcinoma (once) leukopheresis (once) lung (once) capped 5' end, 2 accessions 49 bp exon 160 bp exon 160 bp exon 3071 bp [gt-ag] intron 2 GenBank accessions 932 RNA-seq supporting reads 57 UHR pooled cells 32 Brain 6 Blood 837 Neuroblastoma (also 27 Primates bodymap) 366 bp exon 883 bp [gt-ag] intron 2 GenBank accessions 1337 RNA-seq supporting reads 74 UHR pooled cells 286 Brain 19 Blood 951 Neuroblastoma 7 Other (also 281 Primates bodymap) 148 bp exon 148 bp exon 954 bp [gt-ag] intron 1 GenBank accession 349 RNA-seq supporting reads 82 UHR pooled cells 74 Brain 8 Blood 180 Neuroblastoma 5 Other (also 18 Primates bodymap) 201 bp exon 101 bp [gt-ag] intron 3 GenBank accessions 1524 RNA-seq supporting reads 217 UHR pooled cells 321 Brain 22 Blood 941 Neuroblastoma 23 Other (also 120 Primates bodymap) 8 accessions, some from brain (seen 2 times) embryonal carcinoma, cell line (once) eyeball (once), head neck (once) lung (once) 884 bp exon 160 bp exon 160 bp exon 609 bp [gt-ag] intron 114 GenBank accessions 34593 RNA-seq supporting reads 3390 UHR pooled cells 3479 Brain 511 Blood 27110 Neuroblastoma 103 Other (also 787 Primates bodymap) 134 bp exon 117 bp [gt-ag] intron 127 GenBank accessions 46342 RNA-seq supporting reads 4947 UHR pooled cells 5361 Brain 2108 Blood 33719 Neuroblastoma 207 Other (also 2036 Primates bodymap) 750 bp exon 2 accessions, some from cerebellum (seen 2 times) 750 bp exon 1349 bp exon 1349 bp exon 162 bp uORF 1349 bp exon 1349 bp exon 24 accessions, some from carcinoid (seen 3 times) colon est (3), lung (3) anaplastic oligodendroglioma (2) brain (2) capped 5' end, 1 accession 1349 bp exon 584 bp exon 584 bp exon 3 accessions, some from adipose (seen once) amygdala (once), hepatoblastoma (once) capped 5' end, 1 accession 584 bp exon 688 bp exon 688 bp exon 688 bp exon 101 bp [gt-ag] intron 3 GenBank accessions 1524 RNA-seq supporting reads 217 UHR pooled cells 321 Brain 22 Blood 941 Neuroblastoma 23 Other (also 120 Primates bodymap) 4 accessions, some from breast (seen 2 times) ascites (once), pooled lung and spleen (once) stomach (once) 69 bp exon 225 bp exon 609 bp [gt-ag] intron 114 GenBank accessions 34593 RNA-seq supporting reads 3390 UHR pooled cells 3479 Brain 511 Blood 27110 Neuroblastoma 103 Other (also 787 Primates bodymap) 134 bp exon 117 bp [gt-ag] intron 127 GenBank accessions 46342 RNA-seq supporting reads 4947 UHR pooled cells 5361 Brain 2108 Blood 33719 Neuroblastoma 207 Other (also 2036 Primates bodymap) 186 bp exon 2025 bp [gt-ag] intron 1 GenBank accession 300 RNA-seq supporting reads 10 UHR pooled cells 26 Brain 2 Blood 262 Neuroblastoma 366 bp exon 366 bp exon 186 bp [gt-ag] intron 35 GenBank accessions 50627 RNA-seq supporting reads 6989 UHR pooled cells 6418 Brain 2823 Blood 34137 Neuroblastoma 260 Other (also 2151 Primates bodymap) 64 bp exon 633 bp [gt-ag] intron 37 GenBank accessions 67871 RNA-seq supporting reads 8984 UHR pooled cells 8735 Brain 3035 Blood 46849 Neuroblastoma 268 Other (also 3012 Primates bodymap) 92 bp exon 274 bp [gt-ag] intron 1 GenBank accession 132 RNA-seq supporting reads 3 UHR pooled cells 13 Brain 2 Blood 113 Neuroblastoma 1 Other (also 4 Primates bodymap) 55 bp exon 681 bp [gt-ag] intron 34 GenBank accessions 83101 RNA-seq supporting reads 10811 UHR pooled cells 10091 Brain 2530 Blood 59259 Neuroblastoma 410 Other (also 3620 Primates bodymap) 104 bp exon 104 bp exon 198 bp [gt-ag] intron 37 GenBank accessions 42734 RNA-seq supporting reads 6382 UHR pooled cells 5090 Brain 1275 Blood 29657 Neuroblastoma 330 Other (also 1366 Primates bodymap) 7 accessions, some from brain (seen 2 times) breast (once), mammary adenocarcinoma cell line (once), rectum (once) trachea (once) 238 bp exon 517 bp exon 517 bp exon 198 bp [gt-ag] intron 37 GenBank accessions 42734 RNA-seq supporting reads 6382 UHR pooled cells 5090 Brain 1275 Blood 29657 Neuroblastoma 330 Other (also 1366 Primates bodymap) 113 bp exon 1 accession from adrenal gland 113 bp exon 568 bp exon 568 bp exon 200 bp [gt-ag] intron 1 GenBank accession 46 RNA-seq supporting reads 5 UHR pooled cells 5 Brain 1 Blood 35 Neuroblastoma (also 9 Primates bodymap) 134 bp exon 117 bp [gt-ag] intron 127 GenBank accessions 46342 RNA-seq supporting reads 4947 UHR pooled cells 5361 Brain 2108 Blood 33719 Neuroblastoma 207 Other (also 2036 Primates bodymap) 2 accessions, some from thalamus (seen once) thymus (once) capped 5' end, 2 accessions 39 bp exon 20 bp exon 20 bp exon 1425 bp [gt-ag] intron 2 GenBank accessions 1124 bp exon 129 accessions, some from lung (seen 16 times) brain (7), eye (7), parathyroid gland (6) parathyroid tumor (6) Validated 3' end, 48 accessions 1124 bp exon 632 bp exon 1 accession from t-lymphocytes 632 bp exon Alternative mRNAs are shown aligned from 5' to 3' on a virtual genome where introns have been shrunk to a minimal length. Exon size is proportional to length, intron height reflects the number of cDNAs supporting each intron, the small numbers show the support of the introns in deep sequencing (with details in mouse-over) . Introns of the same color are identical, of different colors are different. 'Good proteins' are pink, partial or not-good proteins are yellow, uORFs are green. 5' cap or3' poly A flags show completeness of the transcript.
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Sequences: click on the numbers to get the DNA back to top
mRNA variant mRNA matching the genome Best predicted protein 5' UTR 3' UTR uORF Upstream sequence Transcription
unit
pre-mRNA
Downstream sequence
aAug10 2521 bp 442 aa 78 bp 1114 bp 2kb including Promoter 7169 bp 1kb
bAug10 1081 bp 307 aa 409 bp 273 bp 2kb including Promoter 5934 bp 1kb
cAug10 1759 bp 195 aa 25 bp 1146 bp 2kb probably including promoter 6768 bp 1kb
dAug10 1044 bp 187 aa 25 bp 455 bp 2kb probably including promoter 1770 bp 1kb
eAug10 1464 bp 159 aa 659 bp 325 bp 2kb possibly including promoter 6187 bp 1kb
fAug10-unspliced 1349 bp 155 aa 195 bp 686 bp 159 bp 2kb including Promoter 1349 bp 1kb
gAug10 630 bp 112 aa 293 bp 2kb possibly including promoter 828 bp 1kb
hAug10 1144 bp 103 aa 830 bp 2kb 2569 bp 1kb
iAug10 757 bp 105 aa 367 bp 72 bp 2kb possibly including promoter 858 bp 1kb
jAug10 741 bp 58 aa 567 bp 2kb including Promoter 1058 bp 1kb
kAug10-unspliced 632 bp 90 aa 359 bp 2kb 632 bp 1kb
lAug10-unspliced 584 bp 64 aa 217 bp 172 bp 2kb including Promoter 584 bp 1kb

Gene neighbors and Navigator on chromosome 17q21.33 back to top
ITGA3 D C I R P PDK2 C I R P R SGCA D C I R P R R TMEM92 R P XYLT2 D C R P EME1 C I R P R ACSF2 C R P RSAD1 C R MYCBPAP C I R P EPN3 D C I R P SPATA20 C I R P CACNA1G D C I R P ABCC3 D C R P LUC7L3 C I R P WFIKKN2 C I R P R R C R SAMD14 D C I R P PPP1R9B R P HILS1 D C I R P COL1A1 R R C R P MRPL27 C I R P LRRC59 C I R P CHAD R R R C R ANKRD40 C R C17orf73 R C I R P TOB1 R 100kb 0 ITGA3, 364 accessions 18 variants PDK2, 528 accessions, 16 variants chawrey, 2 accessions 2 variants SGCA, 109 accessions, 12 variants vygla, 1 accession zorrey, 1 accession TMEM92, 72 accessions 5 variants XYLT2, 169 accessions 7 variants EME1, 113 accessions, 9 variants zeegla, 1 accession ACSF2, 328 accessions 31 variants RSAD1, 347 accessions 12 variants MYCBPAP, 125 accessions 16 variants EPN3, 196 accessions, 15 variants SPATA20, 455 accessions 20 variants CACNA1G, 134 accessions 34 variants ABCC3, 329 accessions 24 variants LUC7L3, 545 accessions 25 variants WFIKKN2, 65 accessions 2 variants blyrey, 39 accessions 6 variants blarrey, 3 accessions 2 variants sharzu, 2 accessions, 2 variants sleeslee, 1 accession roturi, 1 accession smyslee, 5 accessions slerslee, 1 accession sloyslee, 3 accessions foploy, 1 accession bloyzu, 1 accession smawslee, 1 accession smeyslee, 2 accessions reywee, 4 accessions smoyslee, 2 accessions snawslee, 1 accession sneeslee, 1 accession tormee, 1 accession snerslee, 1 accession snorslee, 1 accession glyvorbu, 1 accession spaslee, 2 accessions vamee, 1 accession karploy, 1 accession gluvorbu, 1 accession yuturi, 1 accession flarzu, 1 accession raya, 2 accessions sposlee, 3 accessions sparslee, 4 accessions glervorbu, 2 accessions luploy, 1 accession glarzu, 1 accession maturi, 1 accession sperslee, 1 accession sporslee, 1 accession spoyslee, 3 accessions skorda, 1 accession styslee, 1 accession stuslee, 2 accessions mituri, 3 accessions, 2 variants fawserbo, 1 accession kluvorbu, 1 accession pyploy, 1 accession stawslee, 1 accession chamee, 2 accessions sterslee, 1 accession steyslee, 1 accession storslee, 1 accession klarvorbu, 2 accessions porploy, 1 accession klervorbu, 1 accession swyslee, 1 accession shumee, 1 accession swarslee, 1 accession shorey, 2 accessions swawslee, 1 accession sweeslee, 1 accession rerploy, 1 accession sweyslee, 1 accession sworslee, 1 accession plyvorbu, 1 accession busler, 3 accessions pluvorbu, 1 accession plovorbu, 1 accession plarvorbu, 2 accessions plawvorbu, 1 accession soyploy, 1 accession blymee, 2 accessions werploy, 1 accession pleevorbu, 2 accessions dosler, 1 accession plervorbu, 1 accession sheyploy, 1 accession plorvorbu, 1 accession seewee, 4 accessions doysler, 1 accession fysler, 3 accessions blermee, 2 accessions flaploy, 1 accession fleyploy, 1 accession klomee, 1 accession skavorbu, 1 accession klaploy, 1 accession gasler, 2 accessions lerzo, 6 accessions gawsler, 2 accessions klarmee, 2 accessions plamee, 1 accession gorsler, 1 accession jasler, 2 accessions plorploy, 1 accession sloslee, 1 accession teemee, 1 accession slarslee, 1 accession seteru, 6 accessions derploy, 1 accession slawslee, 2 accessions sleyslee, 1 accession slorslee, 2 accessions smaslee, 2 accessions foserbo, 1 accession smeeslee, 2 accessions garploy, 1 accession fleyvorbu, 2 accessions farserbo, 1 accession termee, 1 accession rorwee, 2 accessions snaslee, 1 accession nita, 1 accession snyslee, 2 accessions 2 variants snoslee, 2 accessions snarslee, 2 accessions jorploy, 1 accession zerrey, 3 accessions glavorbu, 4 accessions spyslee, 1 accession glarvorbu, 1 accession sinoma, 3 accessions, 2 variants glawvorbu, 2 accessions cheyrey, 3 accessions gleevorbu, 2 accessions yoturi, 2 accessions larploy, 1 accession tisuri, 3 accessions norploy, 2 accessions speyslee, 1 accession sunoma, 1 accession womee, 1 accession steeslee, 1 accession skazu, 2 accessions puploy, 2 accessions swaslee, 1 accession skoyda, 2 accessions charmee, 1 accession swoslee, 3 accessions kleyvorbu, 2 accessions klorvorbu, 1 accession sowee, 1 accession bysler, 3 accessions sorploy, 1 accession bosler, 1 accession barsler, 3 accessions sneezu, 6 accessions sheerey, 2 accessions typloy, 2 accessions bersler, 1 accession beysler, 1 accession borsler, 1 accession woyploy, 1 accession boysler, 1 accession zeyploy, 1 accession senoma, 3 accessions dasler, 1 accession pleyvorbu, 1 accession darsler, 1 accession blomee, 4 accessions dorsler, 1 accession fasler, 1 accession blyploy, 2 accessions serwee, 2 accessions fosler, 1 accession seywee, 1 accession blarmee, 4 accessions feesler, 1 accession floymee, 1 accession glarmee, 1 accession fersler, 1 accession foysler, 2 accessions klorploy, 1 accession gusler, 1 accession gosler, 1 accession garsler, 1 accession geesler, 2 accessions geysler, 1 accession feeserbo, 1 accession jysler, 1 accession bleerey, 1 accession jusler, 1 accession DLX3, 102 accessions, 2 variants SAMD14, 150 accessions 11 variants PPP1R9B, 218 accessions 3 variants HILS1, 19 accessions, 3 variants COL1A1, 595 accessions 12 variants mihori, 1 accession tasuri, 5 accessions, 2 variants MRPL27, 382 accessions 8 variants LRRC59, 277 accessions 4 variants CHAD, 78 accessions, 4 variants suwee, 3 accessions, 2 variants shurey, 8 accessions, 2 variants tesuri, 5 accessions ANKRD40, 244 accessions 4 variants C17orf73, 19 accessions 5 variants chargla, 2 accessions 2 variants TOB1, 339 accessions, 4 variants blorey, 8 accessions, 2 variants ZOOM IN                D:disease,C:conserved,I:interactions,R:regulation,P:publications         Read more...
Annotated mRNA diagrams back to top
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f-u, .g, .h, .i, .j, .k-u, .l-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C

To mine knowledge about the gene, please click the 'Gene Summary' or the 'Function, regulation, related genes ' tab at the top of the page. The 'Gene Summary' page includes all we learnt about the gene, functional annotations of neighboring genes, maps, links to other sites and the bibliography. The 'Function, regulation, related genes ' page includes Diseases (D), Pathways, GO annotations, conserved domains (C), interactions (I) reference into function, and pointers to all genes with the same functional annotation.
To compare alternative variants, their summarized annotations, predicted proteins, introns and exons, or to access any sequence, click the 'Alternative mRNAs features' tab. To see a specific mRNA variant diagram, sequence and annotation, click the variant name in the 'mRNA' tab. To examine expression data from all cDNAs clustered in this gene by AceView, click the 'Expression tissue'.

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