RefSeq summary
[PLEC] Plectin is a prominent member of an important family of structurally and in part functionally related proteins, termed plakins or cytolinkers, that are capable of interlinking different elements of the cytoskeleton. Plakins, with their multi-domain structure and enormous size, not only play crucial roles in maintaining cell and tissue integrity and orchestrating dynamic changes in cytoarchitecture and cell shape, but also serve as scaffolding platforms for the assembly, positioning, and regulation of signaling complexes (for reviews see PMID: 9701547, 11854008, and 17499243). Plectin is expressed as several protein isoforms in a wide range of cell types and tissues from a single gene located on chromosome 8 in humans (PMID: 8633055, 8698233). Until 2010, this locus was named plectin 1 (symbol PLEC1 in human; Plec1 in mouse and rat) and the gene product had been referred to as 'hemidesmosomal protein 1' or 'plectin 1, intermediate filament binding 500kDa'. These names have been superseded by plectin. The plectin gene locus in mouse on chromosome 15 has been analyzed in detail (PMID: 10556294, 14559777), revealing a genomic exon-intron organization with well over 40 exons spanning over 62 kb and an unusual 5' transcript complexity of plectin isoforms. Eleven exons (1-1j) have been identified that alternatively splice directly into a common exon 2 which is the first exon to encode plectin's highly conserved actin binding domain (ABD). Three additional exons (-1, 0a, and 0) splice into an alternative first coding exon (1c), and two additional exons (2alpha and 3alpha) are optionally spliced within the exons encoding the acting binding domain (exons 2-8). Analysis of the human locus has identified eight of the eleven alternative 5' exons found in mouse and rat (PMID: 14672974); exons 1i, 1j and 1h have not been confirmed in human. Furthermore, isoforms lacking the central rod domain encoded by exon 31 have been detected in mouse (PMID:10556294), rat (PMID: 9177781), and human (PMID: 11441066, 10780662, 20052759). It has been shown that the short alternative amino-terminal sequences encoded by the different first exons direct the targeting of the various isoforms to distinct subcellular locations (PMID: 14559777). As the expression of specific plectin isoforms was found to be dependent on cell type (tissue) and stage of development (PMID: 10556294, 12542521, 17389230) it appears that each cell type (tissue) contains a unique set (proportion and composition) of plectin isoforms, as if custom-made for specific requirements of the particular cells. Concordantly, individual isoforms were found to carry out distinct and specific functions (PMID: 14559777, 12542521, 18541706). In 1996, a number of groups reported that patients suffering from epidermolysis bullosa simplex with muscular dystrophy (EBS-MD) lacked plectin expression in skin and muscle tissues due to defects in the plectin gene (PMID: 8698233, 8941634, 8636409, 8894687, 8696340). Two other subtypes of plectin-related EBS have been described: EBS-pyloric atresia (PA) and EBS-Ogna. For reviews of plectin-related diseases see PMID: 15810881, 19945614. Mutations in the plectin gene related to human diseases should be named based on the position in NM 000445 (variant 1, isoform 1c), unless the mutation is located within one of the other alternative first exons, in which case the position in the respective Reference Sequence should be used.
RefSeq annotates 8 representative transcripts (NM included in AceView variants .a, .b, .c, .d, .e, .f, .g and .h), but Homo sapiens cDNA sequences in GenBank, dbEST, Trace and SRA, filtered against clone rearrangements, coaligned on the genome and clustered in a minimal non-redundant way by the manually supervised AceView program, support at least 14 spliced variants .
AceView synopsis, each blue text links to tables and details
Expression: According to AceView, this gene is
expressed at high level , 2.6 times the average gene in this release. The
sequence of this gene is defined by
295 GenBank accessions from 271 cDNA clones, some from skin (seen 38 times), pancreas (32), ductal carcinoma, cell line (24), melanotic melanoma, cell line (16), eye (13), prostate (11), brain (9) and 95 other
tissues . We annotate
structural defects or features in one cDNA clone.
Alternative mRNA variants and regulation: The gene contains
43 distinct introns (41 gt-ag, 2 gc-ag). Transcription produces
15 different mRNAs , 14 alternatively spliced variants and 1 unspliced form. There are 10 probable
alternative promotors , 2 non overlapping alternative last exons and 8 validated
alternative polyadenylation sites (see the
diagram ). The mRNAs appear to differ by truncation of the 5' end, truncation of the 3' end, presence or absence of 2
cassette exons , overlapping exons with different boundaries.
Note that mRNA .lAug10 was found
in vivo , although it is a predicted target of
nonsense mediated mRNA decay (NMD).
Function: There are
65 articles specifically referring to this gene in PubMed. Functionally, the gene has been tested for association to
diseases (OMIM: epidermolysis bullosa simplex with muscular dystrophy; Epidermolysis bullosa simplex with pyloric atresia; Epidermolysis bullosa simplex, Ogna type; Other sources: Alexander disease; Cardiomyopathy, dilated; Epidermolysis Bullosa; Intestinal Pseudo-Obstruction; Muscle Weakness; Muscular Dystrophies; Muscular dystrophy with epidermolysis bullosa simplex; Nuclear Family; Syndrome) and proposed to participate in a
process (hemidesmosome assembly). Proteins are expected to have molecular
functions (structural constituent of muscle, actin binding) and to
localize in various compartments (cytosol, plasma membrane, contractile fiber, cytoplasm, cytoskeleton, insoluble fraction). Putative
protein interactors have been described (ACTC1, ACTG1, CASP8, CDK1, COL17A1, EGFR, GNB2L1ANDSNORD95ANDSNORD96A, GRB2, ITGA6, ITGB4, KCTD13, LMNB1, MAP2, MSN, PAN2ANDCNPY2ANDCS, SMAD9, SPTA1, SPTAN1, USP20, VIM).
Protein coding potential: 14 spliced mRNAs putatively encode
good proteins , altogether
14 different isoforms (4 complete, 5 COOH complete, 5 partial ), some containing
domains Calponin homology (CH) domain, Plectin repeat, Plectin/S10 domain [Pfam], some transmembrane domains, a vacuolar domain, a coiled coil stretch
[Psort2] . The remaining mRNA variant (unspliced; partial) appears not to encode a good protein. Finally proteins from this gene may be modulated by
acetylation; di-methylation; mono-methylation; phosphorylation; ubiquitination , as detailed at PhosphoSite.
Please quote:
AceView: a comprehensive cDNA-supported gene and transcripts annotation, Genome Biology 2006, 7(Suppl 1):S12 .
Map on chromosome 8, links to other databases and other names
Map: This gene PLEC maps on chromosome 8, at 8q24 according to Entrez Gene. In AceView, it covers
61.60 kb , from 145050917 to 144989320 (NCBI 37, August 2010), on the reverse strand.
Links to: manual annotations from
OMIM_131950 ,
OMIM_226670 ,
OMIM_612138 ,
PhosphoSite , the
SNP view, gene overviews from
Entrez Gene 5339 ,
GeneCards , expression data from
ECgene ,
UniGene , molecular and other annotations from
UCSC , or our
GOLD analysis.
The previous AceView annotation is
here .
Other names: The gene is also known as PLEC, HD1, PCN, EBS1, EBSO, PLTN, PLEC1 or PLEC1b, LOC5339. It has been described as plectin, plectin-1, hemidesmosomal protein 1, plectin 1, intermediate filament binding protein 500kDa.
Closest AceView homologs in other species
?
The closest mouse gene , according to BlastP, is the AceView gene
Plec1 (e=0.0).
The closest C.elegans gene , according to BlastP, is the AceView/WormGene
vab-10 (e= 10
-130 ), which may contain interesting functional annotation.
The closest A.thaliana genes , according to BlastP, are the AceView genes
ATFIM1 (e=2 10
-07 ),
AT2G04750 (e=5 10
-07 ),
FIM2 (e=10
-06 ),
AT5G55400 (e=5 10
-06 ), which may contain interesting functional annotation
PLEC
Gene expression in 15 primates, 16 tissues, from the NHPRTR project in sFPKM
BAB
SkeletalMuscle
WholeBlood
CHP
Kidney
Liver
Lung
Spleen
CMC
CMM
Cerebellum
HUM
Brain
Colon
Heart
LymphNode
Ovary
Testis
JMI
BoneMarrow
MLM
OWL
PTM
RMC
RMI
Pituitary
SQM
Thymus
MST
SMY
RTL
35.1
11.6
17.6
7.64
24.8
65.5
53.2
61.1
17.6
32.8
15.3
86.5
75.3
114
46.3
32.8
40.3
61.1
489
131
75.3
92.7
4.39
4.71
6.21
12.4
13.3
7.13
26.6
8.78
13.3
14.3
6.21
5.79
3.82
10.1
43.2
40.3
37.6
37.6
14.3
16.4
28.5
26.6
10.8
6.65
9.41
10.1
43.2
23.2
13.3
2.70
37.6
21.6
57.1
151
18.8
80.7
5.40
11.6
10.8
40.3
11.6
8.19
40.3
9.41
12.4
14.3
13.3
16.4
10.1
17.6
46.3
15.3
7.64
14.3
28.5
11.6
40.3
28.5
8.78
35.1
8.78
8.19
5.79
8.19
18.8
23.2
13.3
21.6
7.13
46.3
23.2
5.79
4.39
14.3
8.78
24.8
12.4
18.8
3.10
21.6
13.3
49.7
122
13.3
20.2
21.6
57.1
9.41
17.6
28.5
4.39
10.8
4.10
3.57
32.8
12.4
11.6
24.8
10.1
10.8
28.5
10.1
37.6
10.8
5.79
37.6
26.6
35.1
13.3
10.8
17.6
26.6
8.19
17.6
1.26
4.39
20.2
106
7.13
11.6
3.57
2.35
17.6
24.8
6.65
5.40
5.40
0.89
5.04
11.6
10.8
10.1
7.64
20.2
8.78
Expression
quantiles
None
Weak
1
2
3
4
5
6
7
8
10
20
This gene
All genes
log2 distributions
RNA-seq gene expression profile across 16 selected tissues from the Non-Human Primates Reference Transcriptome Resource (link to
NHPRTR project ).
- Primates:
Apes (
HUM : Human (Illumina BodyMap 2),
CHP : Chimpanzee),
Old World monkeys (
PTM : Pig-Tailed Macaque,
JMI Japanese Macaque,
RMI Rhesus Macaque Indian,
RMC Rhesus Macaque Chinese,
CMM Cynomolgus Macaque Mauritian,
CMC Cynomolgus Macaque Chinese,
BAB Olive Baboon,
SMY Sooty Mangabey);
New World monkeys (
MST common Marmoset,
SQM Squirrel Monkey,
OWL Owl Monkey); and
Lemurs (
MLM Mouse Lemur,
RTL Ring-Tailed Lemur).
- The level for significantly expressed genes is color coded in 8 equal sized bins (light to dark green). Light gray is for weak not-accurately measured expression (2 to 8 reads above intergenic background); dark gray for no expression or no sequence conservation (0 read in gene). The plot to the right shows the distribution of measured expression values in all tissues for
all genes (blue) and for
this gene (green) , in Magic index = log
2 (1000 sFPKM).
You may also examine the strand-specific
genome coverage plots on the experimental AceView/Magic hub at UCSC , by tissue or by species. Tracks may be
slow to load ; please reload if some tracks come up yellow-greenish, and thanks to UCSC for the great work!.
Read more...
About UCSC tracks: you may enjoy the plots for the summed coverage over all primates' libraries (top track), summarizing 3 terabases of stranded RNA-seq. Fragments mapping on the + strand of the genome (from genes on the + strand) are red (or dark), on minus strand blue (or light) and antisense transcribed areas are black or overlaid. The vertical scale for each track is self-adapting. Homozygous SNPs tracks are also presented.
About mapping: Primates body map RNA-seq data were stringently mapped to the human genome using the NCBI Magic pipeline. Normalized results are shown as significant FPKM (sFPKM), which includes corrections on F, K and M, computed from parameters measured directly in each RNA-seq experiment, to render the expression measures more significant and more robust to experimental biases. Only fragments with both reads mapped uniquely and over at least 80+80 bases ending with 8 exact bases on each side of each read, and facing each other in a single site or gene, are included in the computation of the sFPKM/index, in the coverage plots, and in the determination of homozygous SNPs (minimum coverage 10, minimum allele frequency 95%). But be aware that genes whose sequence evolved to become too distant from Human cannot be measured well, this bias can be appreciated in the per-species coverage plots at UCSC.
About libraries: For non-human primates, total RNA libraries used TruSeq, ribozero and the stranded UDG protocol. The human 2010 libraries used the polyA selected non-stranded protocol, with short reads (50, 75 or 50+50 bases); furthermore the insert lengths are larger in human than in the non-human primates (average insert size 187 bp in non-human primates versus 232 bp in human). These protocol differences may impact expression measures for the non polyadenylated genes (or genes with shorter or occasional polyA tails), for the pseudogenes or close gene families (specificity is reduced in humans due to shorter reads), and for the very short genes.
Complete gene on genome diagram:
Compact gene diagram
Gene PLEC
5'
3'
encoded on minus strand of chromosome 8 from 145,050,917 to 144,989,320
2522
38860
a
[NM]
21117
38860
b
[NM]
2463
38860
c
[NM]
3758
38860
d
[NM]
2567
38860
e
[NM]
38860
f
[NM]
316
38860
g
[NM]
13075
38860
h
[NM]
33
38860
i
1
38860
j
13075
k
o-u
4
38860
l
21117
m
n
10kb
0
693 bp exon
693 bp exon
11491 bp [gt-ag] intron
2 GenBank accessions
2520 RNA-seq supporting reads
344 UHR pooled cells
135 Brain
528 Blood
1475 Neuroblastoma
38 Other
(also 895 Primates bodymap)
62 bp exon
390 bp [gt-ag] intron
39 GenBank accessions
42072 RNA-seq supporting reads
2325 UHR pooled cells
1799 Brain
15334 Blood
22290 Neuroblastoma
324 Other
(also 11097 Primates bodymap)
90 bp exon
908 bp [gt-ag] intron
31 GenBank accessions
38829 RNA-seq supporting reads
2859 UHR pooled cells
2804 Brain
14204 Blood
18409 Neuroblastoma
553 Other
(also 20816 Primates bodymap)
78 bp exon
93 bp [gt-ag] intron
35 GenBank accessions
57072 RNA-seq supporting reads
2863 UHR pooled cells
4293 Brain
13740 Blood
35300 Neuroblastoma
876 Other
(also 20016 Primates bodymap)
93 bp exon
964 bp [gt-ag] intron
35 GenBank accessions
55347 RNA-seq supporting reads
2549 UHR pooled cells
4271 Brain
11582 Blood
36078 Neuroblastoma
867 Other
(also 20399 Primates bodymap)
167 bp exon
534 bp [gt-ag] intron
24 GenBank accessions
69740 RNA-seq supporting reads
2855 UHR pooled cells
5492 Brain
15528 Blood
44909 Neuroblastoma
956 Other
(also 21386 Primates bodymap)
116 bp exon
80 bp [gt-ag] intron
22 GenBank accessions
57609 RNA-seq supporting reads
2282 UHR pooled cells
4393 Brain
11863 Blood
38226 Neuroblastoma
845 Other
(also 19329 Primates bodymap)
107 bp exon
81 bp [gt-ag] intron
21 GenBank accessions
39047 RNA-seq supporting reads
1521 UHR pooled cells
3133 Brain
7684 Blood
26139 Neuroblastoma
570 Other
(also 11087 Primates bodymap)
120 bp exon
79 bp [gt-ag] intron
17 GenBank accessions
51865 RNA-seq supporting reads
2513 UHR pooled cells
4576 Brain
8028 Blood
35924 Neuroblastoma
824 Other
(also 6677 Primates bodymap)
96 bp exon
189 bp [gt-ag] intron
17 GenBank accessions
65836 RNA-seq supporting reads
2722 UHR pooled cells
4988 Brain
16937 Blood
40464 Neuroblastoma
725 Other
(also 17109 Primates bodymap)
128 bp exon
226 bp [gt-ag] intron
17 GenBank accessions
56343 RNA-seq supporting reads
2508 UHR pooled cells
4817 Brain
6757 Blood
41548 Neuroblastoma
713 Other
(also 14773 Primates bodymap)
94 bp exon
646 bp [gt-ag] intron
17 GenBank accessions
55486 RNA-seq supporting reads
2215 UHR pooled cells
4447 Brain
7811 Blood
40183 Neuroblastoma
830 Other
(also 9697 Primates bodymap)
155 bp exon
85 bp [gt-ag] intron
17 GenBank accessions
63428 RNA-seq supporting reads
2738 UHR pooled cells
5323 Brain
10530 Blood
43753 Neuroblastoma
1084 Other
(also 16426 Primates bodymap)
319 bp exon
80 bp [gt-ag] intron
17 GenBank accessions
48738 RNA-seq supporting reads
1944 UHR pooled cells
3414 Brain
10722 Blood
31960 Neuroblastoma
698 Other
(also 12419 Primates bodymap)
78 bp exon
73 bp [gt-ag] intron
17 GenBank accessions
52754 RNA-seq supporting reads
2534 UHR pooled cells
4162 Brain
10352 Blood
35036 Neuroblastoma
670 Other
(also 12644 Primates bodymap)
162 bp exon
165 bp [gt-ag] intron
17 GenBank accessions
64401 RNA-seq supporting reads
3047 UHR pooled cells
5048 Brain
16213 Blood
39274 Neuroblastoma
819 Other
(also 19097 Primates bodymap)
105 bp exon
97 bp [gt-ag] intron
17 GenBank accessions
56181 RNA-seq supporting reads
2661 UHR pooled cells
4509 Brain
12053 Blood
36225 Neuroblastoma
733 Other
(also 11517 Primates bodymap)
96 bp exon
277 bp [gt-ag] intron
17 GenBank accessions
60628 RNA-seq supporting reads
3178 UHR pooled cells
4949 Brain
10826 Blood
40765 Neuroblastoma
910 Other
(also 10283 Primates bodymap)
126 bp exon
997 bp [gt-ag] intron
17 GenBank accessions
69850 RNA-seq supporting reads
3438 UHR pooled cells
5433 Brain
14475 Blood
45479 Neuroblastoma
1025 Other
(also 12311 Primates bodymap)
153 bp exon
85 bp [gt-ag] intron
17 GenBank accessions
41783 RNA-seq supporting reads
2058 UHR pooled cells
3131 Brain
4453 Blood
31490 Neuroblastoma
651 Other
(also 6360 Primates bodymap)
155 bp exon
81 bp [gt-ag] intron
17 GenBank accessions
50228 RNA-seq supporting reads
2530 UHR pooled cells
3932 Brain
5358 Blood
37646 Neuroblastoma
762 Other
(also 6593 Primates bodymap)
127 bp exon
106 bp [gt-ag] intron
17 GenBank accessions
50198 RNA-seq supporting reads
2429 UHR pooled cells
3854 Brain
6929 Blood
36148 Neuroblastoma
838 Other
(also 7739 Primates bodymap)
184 bp exon
74 bp [gt-ag] intron
18 GenBank accessions
51171 RNA-seq supporting reads
2851 UHR pooled cells
4442 Brain
5008 Blood
38050 Neuroblastoma
820 Other
(also 5805 Primates bodymap)
158 bp exon
132 bp [gc-ag] intron
18 GenBank accessions
38616 RNA-seq supporting reads
2040 UHR pooled cells
2936 Brain
5596 Blood
27466 Neuroblastoma
578 Other
(also 2761 Primates bodymap)
179 bp exon
1110 bp [gt-ag] intron
18 GenBank accessions
47497 RNA-seq supporting reads
3241 UHR pooled cells
4287 Brain
4692 Blood
34683 Neuroblastoma
594 Other
(also 8925 Primates bodymap)
139 bp exon
87 bp [gt-ag] intron
17 GenBank accessions
51301 RNA-seq supporting reads
3078 UHR pooled cells
4483 Brain
3426 Blood
39694 Neuroblastoma
620 Other
(also 7955 Primates bodymap)
357 bp exon
74 bp [gt-ag] intron
17 GenBank accessions
50300 RNA-seq supporting reads
3222 UHR pooled cells
4174 Brain
4289 Blood
38001 Neuroblastoma
614 Other
(also 10462 Primates bodymap)
84 bp exon
170 bp [gt-ag] intron
17 GenBank accessions
55724 RNA-seq supporting reads
4154 UHR pooled cells
4858 Brain
9019 Blood
37057 Neuroblastoma
636 Other
(also 14590 Primates bodymap)
105 bp exon
94 bp [gt-ag] intron
17 GenBank accessions
70071 RNA-seq supporting reads
5417 UHR pooled cells
7150 Brain
9980 Blood
46712 Neuroblastoma
812 Other
(also 16805 Primates bodymap)
99 bp exon
899 bp [gt-ag] intron
17 GenBank accessions
28041 RNA-seq supporting reads
2488 UHR pooled cells
3540 Brain
3775 Blood
17837 Neuroblastoma
401 Other
(also 7068 Primates bodymap)
3381 bp exon
108 bp [gt-ag] intron
17 GenBank accessions
54195 RNA-seq supporting reads
6088 UHR pooled cells
6291 Brain
4302 Blood
36414 Neuroblastoma
1100 Other
(also 8046 Primates bodymap)
7243 bp exon
2 accessions, NM_201380.2
Validated 3' end, 1 accession
7243 bp exon
47 bp exon
1327 bp [gc-ag] intron
11 GenBank accessions
11534 RNA-seq supporting reads
271 UHR pooled cells
1085 Brain
3335 Blood
6711 Neuroblastoma
132 Other
(also 1316 Primates bodymap)
199 bp exon
199 bp exon
36484 bp [gt-ag] intron
10 GenBank accessions
21107 RNA-seq supporting reads
713 UHR pooled cells
2100 Brain
4705 Blood
13310 Neuroblastoma
279 Other
(also 3384 Primates bodymap)
62 bp exon
390 bp [gt-ag] intron
39 GenBank accessions
42072 RNA-seq supporting reads
2325 UHR pooled cells
1799 Brain
15334 Blood
22290 Neuroblastoma
324 Other
(also 11097 Primates bodymap)
90 bp exon
908 bp [gt-ag] intron
31 GenBank accessions
38829 RNA-seq supporting reads
2859 UHR pooled cells
2804 Brain
14204 Blood
18409 Neuroblastoma
553 Other
(also 20816 Primates bodymap)
78 bp exon
93 bp [gt-ag] intron
35 GenBank accessions
57072 RNA-seq supporting reads
2863 UHR pooled cells
4293 Brain
13740 Blood
35300 Neuroblastoma
876 Other
(also 20016 Primates bodymap)
93 bp exon
964 bp [gt-ag] intron
35 GenBank accessions
55347 RNA-seq supporting reads
2549 UHR pooled cells
4271 Brain
11582 Blood
36078 Neuroblastoma
867 Other
(also 20399 Primates bodymap)
167 bp exon
534 bp [gt-ag] intron
24 GenBank accessions
69740 RNA-seq supporting reads
2855 UHR pooled cells
5492 Brain
15528 Blood
44909 Neuroblastoma
956 Other
(also 21386 Primates bodymap)
116 bp exon
80 bp [gt-ag] intron
22 GenBank accessions
57609 RNA-seq supporting reads
2282 UHR pooled cells
4393 Brain
11863 Blood
38226 Neuroblastoma
845 Other
(also 19329 Primates bodymap)
107 bp exon
81 bp [gt-ag] intron
21 GenBank accessions
39047 RNA-seq supporting reads
1521 UHR pooled cells
3133 Brain
7684 Blood
26139 Neuroblastoma
570 Other
(also 11087 Primates bodymap)
120 bp exon
79 bp [gt-ag] intron
17 GenBank accessions
51865 RNA-seq supporting reads
2513 UHR pooled cells
4576 Brain
8028 Blood
35924 Neuroblastoma
824 Other
(also 6677 Primates bodymap)
96 bp exon
189 bp [gt-ag] intron
17 GenBank accessions
65836 RNA-seq supporting reads
2722 UHR pooled cells
4988 Brain
16937 Blood
40464 Neuroblastoma
725 Other
(also 17109 Primates bodymap)
128 bp exon
226 bp [gt-ag] intron
17 GenBank accessions
56343 RNA-seq supporting reads
2508 UHR pooled cells
4817 Brain
6757 Blood
41548 Neuroblastoma
713 Other
(also 14773 Primates bodymap)
94 bp exon
646 bp [gt-ag] intron
17 GenBank accessions
55486 RNA-seq supporting reads
2215 UHR pooled cells
4447 Brain
7811 Blood
40183 Neuroblastoma
830 Other
(also 9697 Primates bodymap)
155 bp exon
85 bp [gt-ag] intron
17 GenBank accessions
63428 RNA-seq supporting reads
2738 UHR pooled cells
5323 Brain
10530 Blood
43753 Neuroblastoma
1084 Other
(also 16426 Primates bodymap)
319 bp exon
80 bp [gt-ag] intron
17 GenBank accessions
48738 RNA-seq supporting reads
1944 UHR pooled cells
3414 Brain
10722 Blood
31960 Neuroblastoma
698 Other
(also 12419 Primates bodymap)
78 bp exon
73 bp [gt-ag] intron
17 GenBank accessions
52754 RNA-seq supporting reads
2534 UHR pooled cells
4162 Brain
10352 Blood
35036 Neuroblastoma
670 Other
(also 12644 Primates bodymap)
162 bp exon
165 bp [gt-ag] intron
17 GenBank accessions
64401 RNA-seq supporting reads
3047 UHR pooled cells
5048 Brain
16213 Blood
39274 Neuroblastoma
819 Other
(also 19097 Primates bodymap)
105 bp exon
97 bp [gt-ag] intron
17 GenBank accessions
56181 RNA-seq supporting reads
2661 UHR pooled cells
4509 Brain
12053 Blood
36225 Neuroblastoma
733 Other
(also 11517 Primates bodymap)
96 bp exon
277 bp [gt-ag] intron
17 GenBank accessions
60628 RNA-seq supporting reads
3178 UHR pooled cells
4949 Brain
10826 Blood
40765 Neuroblastoma
910 Other
(also 10283 Primates bodymap)
126 bp exon
997 bp [gt-ag] intron
17 GenBank accessions
69850 RNA-seq supporting reads
3438 UHR pooled cells
5433 Brain
14475 Blood
45479 Neuroblastoma
1025 Other
(also 12311 Primates bodymap)
153 bp exon
85 bp [gt-ag] intron
17 GenBank accessions
41783 RNA-seq supporting reads
2058 UHR pooled cells
3131 Brain
4453 Blood
31490 Neuroblastoma
651 Other
(also 6360 Primates bodymap)
155 bp exon
81 bp [gt-ag] intron
17 GenBank accessions
50228 RNA-seq supporting reads
2530 UHR pooled cells
3932 Brain
5358 Blood
37646 Neuroblastoma
762 Other
(also 6593 Primates bodymap)
127 bp exon
106 bp [gt-ag] intron
17 GenBank accessions
50198 RNA-seq supporting reads
2429 UHR pooled cells
3854 Brain
6929 Blood
36148 Neuroblastoma
838 Other
(also 7739 Primates bodymap)
184 bp exon
74 bp [gt-ag] intron
18 GenBank accessions
51171 RNA-seq supporting reads
2851 UHR pooled cells
4442 Brain
5008 Blood
38050 Neuroblastoma
820 Other
(also 5805 Primates bodymap)
158 bp exon
132 bp [gc-ag] intron
18 GenBank accessions
38616 RNA-seq supporting reads
2040 UHR pooled cells
2936 Brain
5596 Blood
27466 Neuroblastoma
578 Other
(also 2761 Primates bodymap)
179 bp exon
1110 bp [gt-ag] intron
18 GenBank accessions
47497 RNA-seq supporting reads
3241 UHR pooled cells
4287 Brain
4692 Blood
34683 Neuroblastoma
594 Other
(also 8925 Primates bodymap)
139 bp exon
87 bp [gt-ag] intron
17 GenBank accessions
51301 RNA-seq supporting reads
3078 UHR pooled cells
4483 Brain
3426 Blood
39694 Neuroblastoma
620 Other
(also 7955 Primates bodymap)
357 bp exon
74 bp [gt-ag] intron
17 GenBank accessions
50300 RNA-seq supporting reads
3222 UHR pooled cells
4174 Brain
4289 Blood
38001 Neuroblastoma
614 Other
(also 10462 Primates bodymap)
84 bp exon
170 bp [gt-ag] intron
17 GenBank accessions
55724 RNA-seq supporting reads
4154 UHR pooled cells
4858 Brain
9019 Blood
37057 Neuroblastoma
636 Other
(also 14590 Primates bodymap)
105 bp exon
94 bp [gt-ag] intron
17 GenBank accessions
70071 RNA-seq supporting reads
5417 UHR pooled cells
7150 Brain
9980 Blood
46712 Neuroblastoma
812 Other
(also 16805 Primates bodymap)
99 bp exon
899 bp [gt-ag] intron
17 GenBank accessions
28041 RNA-seq supporting reads
2488 UHR pooled cells
3540 Brain
3775 Blood
17837 Neuroblastoma
401 Other
(also 7068 Primates bodymap)
3381 bp exon
108 bp [gt-ag] intron
17 GenBank accessions
54195 RNA-seq supporting reads
6088 UHR pooled cells
6291 Brain
4302 Blood
36414 Neuroblastoma
1100 Other
(also 8046 Primates bodymap)
7244 bp exon
255 accessions, NM_000445.3
some from skin (seen 38 times)
pancreas (32), ductal carcinoma
cell line (24), melanotic melanoma
cell line (16), eye (13)
Validated 3' end, 30 accessions
7244 bp exon
180 bp exon
180 bp exon
5086 bp [gt-ag] intron
3 GenBank accessions
2460 RNA-seq supporting reads
77 UHR pooled cells
75 Brain
691 Blood
1589 Neuroblastoma
28 Other
(also 1975 Primates bodymap)
62 bp exon
390 bp [gt-ag] intron
39 GenBank accessions
42072 RNA-seq supporting reads
2325 UHR pooled cells
1799 Brain
15334 Blood
22290 Neuroblastoma
324 Other
(also 11097 Primates bodymap)
90 bp exon
908 bp [gt-ag] intron
31 GenBank accessions
38829 RNA-seq supporting reads
2859 UHR pooled cells
2804 Brain
14204 Blood
18409 Neuroblastoma
553 Other
(also 20816 Primates bodymap)
78 bp exon
93 bp [gt-ag] intron
35 GenBank accessions
57072 RNA-seq supporting reads
2863 UHR pooled cells
4293 Brain
13740 Blood
35300 Neuroblastoma
876 Other
(also 20016 Primates bodymap)
93 bp exon
964 bp [gt-ag] intron
35 GenBank accessions
55347 RNA-seq supporting reads
2549 UHR pooled cells
4271 Brain
11582 Blood
36078 Neuroblastoma
867 Other
(also 20399 Primates bodymap)
167 bp exon
534 bp [gt-ag] intron
24 GenBank accessions
69740 RNA-seq supporting reads
2855 UHR pooled cells
5492 Brain
15528 Blood
44909 Neuroblastoma
956 Other
(also 21386 Primates bodymap)
116 bp exon
80 bp [gt-ag] intron
22 GenBank accessions
57609 RNA-seq supporting reads
2282 UHR pooled cells
4393 Brain
11863 Blood
38226 Neuroblastoma
845 Other
(also 19329 Primates bodymap)
107 bp exon
81 bp [gt-ag] intron
21 GenBank accessions
39047 RNA-seq supporting reads
1521 UHR pooled cells
3133 Brain
7684 Blood
26139 Neuroblastoma
570 Other
(also 11087 Primates bodymap)
120 bp exon
79 bp [gt-ag] intron
17 GenBank accessions
51865 RNA-seq supporting reads
2513 UHR pooled cells
4576 Brain
8028 Blood
35924 Neuroblastoma
824 Other
(also 6677 Primates bodymap)
96 bp exon
189 bp [gt-ag] intron
17 GenBank accessions
65836 RNA-seq supporting reads
2722 UHR pooled cells
4988 Brain
16937 Blood
40464 Neuroblastoma
725 Other
(also 17109 Primates bodymap)
128 bp exon
226 bp [gt-ag] intron
17 GenBank accessions
56343 RNA-seq supporting reads
2508 UHR pooled cells
4817 Brain
6757 Blood
41548 Neuroblastoma
713 Other
(also 14773 Primates bodymap)
94 bp exon
646 bp [gt-ag] intron
17 GenBank accessions
55486 RNA-seq supporting reads
2215 UHR pooled cells
4447 Brain
7811 Blood
40183 Neuroblastoma
830 Other
(also 9697 Primates bodymap)
155 bp exon
85 bp [gt-ag] intron
17 GenBank accessions
63428 RNA-seq supporting reads
2738 UHR pooled cells
5323 Brain
10530 Blood
43753 Neuroblastoma
1084 Other
(also 16426 Primates bodymap)
319 bp exon
80 bp [gt-ag] intron
17 GenBank accessions
48738 RNA-seq supporting reads
1944 UHR pooled cells
3414 Brain
10722 Blood
31960 Neuroblastoma
698 Other
(also 12419 Primates bodymap)
78 bp exon
73 bp [gt-ag] intron
17 GenBank accessions
52754 RNA-seq supporting reads
2534 UHR pooled cells
4162 Brain
10352 Blood
35036 Neuroblastoma
670 Other
(also 12644 Primates bodymap)
162 bp exon
165 bp [gt-ag] intron
17 GenBank accessions
64401 RNA-seq supporting reads
3047 UHR pooled cells
5048 Brain
16213 Blood
39274 Neuroblastoma
819 Other
(also 19097 Primates bodymap)
105 bp exon
97 bp [gt-ag] intron
17 GenBank accessions
56181 RNA-seq supporting reads
2661 UHR pooled cells
4509 Brain
12053 Blood
36225 Neuroblastoma
733 Other
(also 11517 Primates bodymap)
96 bp exon
277 bp [gt-ag] intron
17 GenBank accessions
60628 RNA-seq supporting reads
3178 UHR pooled cells
4949 Brain
10826 Blood
40765 Neuroblastoma
910 Other
(also 10283 Primates bodymap)
126 bp exon
997 bp [gt-ag] intron
17 GenBank accessions
69850 RNA-seq supporting reads
3438 UHR pooled cells
5433 Brain
14475 Blood
45479 Neuroblastoma
1025 Other
(also 12311 Primates bodymap)
153 bp exon
85 bp [gt-ag] intron
17 GenBank accessions
41783 RNA-seq supporting reads
2058 UHR pooled cells
3131 Brain
4453 Blood
31490 Neuroblastoma
651 Other
(also 6360 Primates bodymap)
155 bp exon
81 bp [gt-ag] intron
17 GenBank accessions
50228 RNA-seq supporting reads
2530 UHR pooled cells
3932 Brain
5358 Blood
37646 Neuroblastoma
762 Other
(also 6593 Primates bodymap)
127 bp exon
106 bp [gt-ag] intron
17 GenBank accessions
50198 RNA-seq supporting reads
2429 UHR pooled cells
3854 Brain
6929 Blood
36148 Neuroblastoma
838 Other
(also 7739 Primates bodymap)
184 bp exon
74 bp [gt-ag] intron
18 GenBank accessions
51171 RNA-seq supporting reads
2851 UHR pooled cells
4442 Brain
5008 Blood
38050 Neuroblastoma
820 Other
(also 5805 Primates bodymap)
158 bp exon
132 bp [gc-ag] intron
18 GenBank accessions
38616 RNA-seq supporting reads
2040 UHR pooled cells
2936 Brain
5596 Blood
27466 Neuroblastoma
578 Other
(also 2761 Primates bodymap)
179 bp exon
1110 bp [gt-ag] intron
18 GenBank accessions
47497 RNA-seq supporting reads
3241 UHR pooled cells
4287 Brain
4692 Blood
34683 Neuroblastoma
594 Other
(also 8925 Primates bodymap)
139 bp exon
87 bp [gt-ag] intron
17 GenBank accessions
51301 RNA-seq supporting reads
3078 UHR pooled cells
4483 Brain
3426 Blood
39694 Neuroblastoma
620 Other
(also 7955 Primates bodymap)
357 bp exon
74 bp [gt-ag] intron
17 GenBank accessions
50300 RNA-seq supporting reads
3222 UHR pooled cells
4174 Brain
4289 Blood
38001 Neuroblastoma
614 Other
(also 10462 Primates bodymap)
84 bp exon
170 bp [gt-ag] intron
17 GenBank accessions
55724 RNA-seq supporting reads
4154 UHR pooled cells
4858 Brain
9019 Blood
37057 Neuroblastoma
636 Other
(also 14590 Primates bodymap)
105 bp exon
94 bp [gt-ag] intron
17 GenBank accessions
70071 RNA-seq supporting reads
5417 UHR pooled cells
7150 Brain
9980 Blood
46712 Neuroblastoma
812 Other
(also 16805 Primates bodymap)
99 bp exon
899 bp [gt-ag] intron
17 GenBank accessions
28041 RNA-seq supporting reads
2488 UHR pooled cells
3540 Brain
3775 Blood
17837 Neuroblastoma
401 Other
(also 7068 Primates bodymap)
3381 bp exon
108 bp [gt-ag] intron
17 GenBank accessions
54195 RNA-seq supporting reads
6088 UHR pooled cells
6291 Brain
4302 Blood
36414 Neuroblastoma
1100 Other
(also 8046 Primates bodymap)
7243 bp exon
4 accessions, NM_201382.2
some from muscle (seen once)
Validated 3' end, 1 accession
7243 bp exon
133 bp exon
3699 bp [gt-ag] intron
2 GenBank accessions
3756 RNA-seq supporting reads
325 UHR pooled cells
127 Brain
825 Blood
2434 Neuroblastoma
45 Other
(also 855 Primates bodymap)
62 bp exon
390 bp [gt-ag] intron
39 GenBank accessions
42072 RNA-seq supporting reads
2325 UHR pooled cells
1799 Brain
15334 Blood
22290 Neuroblastoma
324 Other
(also 11097 Primates bodymap)
90 bp exon
908 bp [gt-ag] intron
31 GenBank accessions
38829 RNA-seq supporting reads
2859 UHR pooled cells
2804 Brain
14204 Blood
18409 Neuroblastoma
553 Other
(also 20816 Primates bodymap)
78 bp exon
93 bp [gt-ag] intron
35 GenBank accessions
57072 RNA-seq supporting reads
2863 UHR pooled cells
4293 Brain
13740 Blood
35300 Neuroblastoma
876 Other
(also 20016 Primates bodymap)
93 bp exon
964 bp [gt-ag] intron
35 GenBank accessions
55347 RNA-seq supporting reads
2549 UHR pooled cells
4271 Brain
11582 Blood
36078 Neuroblastoma
867 Other
(also 20399 Primates bodymap)
167 bp exon
534 bp [gt-ag] intron
24 GenBank accessions
69740 RNA-seq supporting reads
2855 UHR pooled cells
5492 Brain
15528 Blood
44909 Neuroblastoma
956 Other
(also 21386 Primates bodymap)
116 bp exon
80 bp [gt-ag] intron
22 GenBank accessions
57609 RNA-seq supporting reads
2282 UHR pooled cells
4393 Brain
11863 Blood
38226 Neuroblastoma
845 Other
(also 19329 Primates bodymap)
107 bp exon
81 bp [gt-ag] intron
21 GenBank accessions
39047 RNA-seq supporting reads
1521 UHR pooled cells
3133 Brain
7684 Blood
26139 Neuroblastoma
570 Other
(also 11087 Primates bodymap)
120 bp exon
79 bp [gt-ag] intron
17 GenBank accessions
51865 RNA-seq supporting reads
2513 UHR pooled cells
4576 Brain
8028 Blood
35924 Neuroblastoma
824 Other
(also 6677 Primates bodymap)
96 bp exon
189 bp [gt-ag] intron
17 GenBank accessions
65836 RNA-seq supporting reads
2722 UHR pooled cells
4988 Brain
16937 Blood
40464 Neuroblastoma
725 Other
(also 17109 Primates bodymap)
128 bp exon
226 bp [gt-ag] intron
17 GenBank accessions
56343 RNA-seq supporting reads
2508 UHR pooled cells
4817 Brain
6757 Blood
41548 Neuroblastoma
713 Other
(also 14773 Primates bodymap)
94 bp exon
646 bp [gt-ag] intron
17 GenBank accessions
55486 RNA-seq supporting reads
2215 UHR pooled cells
4447 Brain
7811 Blood
40183 Neuroblastoma
830 Other
(also 9697 Primates bodymap)
155 bp exon
85 bp [gt-ag] intron
17 GenBank accessions
63428 RNA-seq supporting reads
2738 UHR pooled cells
5323 Brain
10530 Blood
43753 Neuroblastoma
1084 Other
(also 16426 Primates bodymap)
319 bp exon
80 bp [gt-ag] intron
17 GenBank accessions
48738 RNA-seq supporting reads
1944 UHR pooled cells
3414 Brain
10722 Blood
31960 Neuroblastoma
698 Other
(also 12419 Primates bodymap)
78 bp exon
73 bp [gt-ag] intron
17 GenBank accessions
52754 RNA-seq supporting reads
2534 UHR pooled cells
4162 Brain
10352 Blood
35036 Neuroblastoma
670 Other
(also 12644 Primates bodymap)
162 bp exon
165 bp [gt-ag] intron
17 GenBank accessions
64401 RNA-seq supporting reads
3047 UHR pooled cells
5048 Brain
16213 Blood
39274 Neuroblastoma
819 Other
(also 19097 Primates bodymap)
105 bp exon
97 bp [gt-ag] intron
17 GenBank accessions
56181 RNA-seq supporting reads
2661 UHR pooled cells
4509 Brain
12053 Blood
36225 Neuroblastoma
733 Other
(also 11517 Primates bodymap)
96 bp exon
277 bp [gt-ag] intron
17 GenBank accessions
60628 RNA-seq supporting reads
3178 UHR pooled cells
4949 Brain
10826 Blood
40765 Neuroblastoma
910 Other
(also 10283 Primates bodymap)
126 bp exon
997 bp [gt-ag] intron
17 GenBank accessions
69850 RNA-seq supporting reads
3438 UHR pooled cells
5433 Brain
14475 Blood
45479 Neuroblastoma
1025 Other
(also 12311 Primates bodymap)
153 bp exon
85 bp [gt-ag] intron
17 GenBank accessions
41783 RNA-seq supporting reads
2058 UHR pooled cells
3131 Brain
4453 Blood
31490 Neuroblastoma
651 Other
(also 6360 Primates bodymap)
155 bp exon
81 bp [gt-ag] intron
17 GenBank accessions
50228 RNA-seq supporting reads
2530 UHR pooled cells
3932 Brain
5358 Blood
37646 Neuroblastoma
762 Other
(also 6593 Primates bodymap)
127 bp exon
106 bp [gt-ag] intron
17 GenBank accessions
50198 RNA-seq supporting reads
2429 UHR pooled cells
3854 Brain
6929 Blood
36148 Neuroblastoma
838 Other
(also 7739 Primates bodymap)
184 bp exon
74 bp [gt-ag] intron
18 GenBank accessions
51171 RNA-seq supporting reads
2851 UHR pooled cells
4442 Brain
5008 Blood
38050 Neuroblastoma
820 Other
(also 5805 Primates bodymap)
158 bp exon
132 bp [gc-ag] intron
18 GenBank accessions
38616 RNA-seq supporting reads
2040 UHR pooled cells
2936 Brain
5596 Blood
27466 Neuroblastoma
578 Other
(also 2761 Primates bodymap)
179 bp exon
1110 bp [gt-ag] intron
18 GenBank accessions
47497 RNA-seq supporting reads
3241 UHR pooled cells
4287 Brain
4692 Blood
34683 Neuroblastoma
594 Other
(also 8925 Primates bodymap)
139 bp exon
87 bp [gt-ag] intron
17 GenBank accessions
51301 RNA-seq supporting reads
3078 UHR pooled cells
4483 Brain
3426 Blood
39694 Neuroblastoma
620 Other
(also 7955 Primates bodymap)
357 bp exon
74 bp [gt-ag] intron
17 GenBank accessions
50300 RNA-seq supporting reads
3222 UHR pooled cells
4174 Brain
4289 Blood
38001 Neuroblastoma
614 Other
(also 10462 Primates bodymap)
84 bp exon
170 bp [gt-ag] intron
17 GenBank accessions
55724 RNA-seq supporting reads
4154 UHR pooled cells
4858 Brain
9019 Blood
37057 Neuroblastoma
636 Other
(also 14590 Primates bodymap)
105 bp exon
94 bp [gt-ag] intron
17 GenBank accessions
70071 RNA-seq supporting reads
5417 UHR pooled cells
7150 Brain
9980 Blood
46712 Neuroblastoma
812 Other
(also 16805 Primates bodymap)
99 bp exon
899 bp [gt-ag] intron
17 GenBank accessions
28041 RNA-seq supporting reads
2488 UHR pooled cells
3540 Brain
3775 Blood
17837 Neuroblastoma
401 Other
(also 7068 Primates bodymap)
3381 bp exon
108 bp [gt-ag] intron
17 GenBank accessions
54195 RNA-seq supporting reads
6088 UHR pooled cells
6291 Brain
4302 Blood
36414 Neuroblastoma
1100 Other
(also 8046 Primates bodymap)
7243 bp exon
2 accessions, NM_201383.1
Validated 3' end, 1 accession
7243 bp exon
128 bp exon
128 bp exon
34710 bp [gt-ag] intron
4 GenBank accessions
2563 RNA-seq supporting reads
155 UHR pooled cells
234 Brain
299 Blood
1867 Neuroblastoma
8 Other
(also 2295 Primates bodymap)
62 bp exon
390 bp [gt-ag] intron
39 GenBank accessions
42072 RNA-seq supporting reads
2325 UHR pooled cells
1799 Brain
15334 Blood
22290 Neuroblastoma
324 Other
(also 11097 Primates bodymap)
90 bp exon
908 bp [gt-ag] intron
31 GenBank accessions
38829 RNA-seq supporting reads
2859 UHR pooled cells
2804 Brain
14204 Blood
18409 Neuroblastoma
553 Other
(also 20816 Primates bodymap)
78 bp exon
93 bp [gt-ag] intron
35 GenBank accessions
57072 RNA-seq supporting reads
2863 UHR pooled cells
4293 Brain
13740 Blood
35300 Neuroblastoma
876 Other
(also 20016 Primates bodymap)
93 bp exon
964 bp [gt-ag] intron
35 GenBank accessions
55347 RNA-seq supporting reads
2549 UHR pooled cells
4271 Brain
11582 Blood
36078 Neuroblastoma
867 Other
(also 20399 Primates bodymap)
167 bp exon
534 bp [gt-ag] intron
24 GenBank accessions
69740 RNA-seq supporting reads
2855 UHR pooled cells
5492 Brain
15528 Blood
44909 Neuroblastoma
956 Other
(also 21386 Primates bodymap)
116 bp exon
80 bp [gt-ag] intron
22 GenBank accessions
57609 RNA-seq supporting reads
2282 UHR pooled cells
4393 Brain
11863 Blood
38226 Neuroblastoma
845 Other
(also 19329 Primates bodymap)
107 bp exon
81 bp [gt-ag] intron
21 GenBank accessions
39047 RNA-seq supporting reads
1521 UHR pooled cells
3133 Brain
7684 Blood
26139 Neuroblastoma
570 Other
(also 11087 Primates bodymap)
120 bp exon
79 bp [gt-ag] intron
17 GenBank accessions
51865 RNA-seq supporting reads
2513 UHR pooled cells
4576 Brain
8028 Blood
35924 Neuroblastoma
824 Other
(also 6677 Primates bodymap)
96 bp exon
189 bp [gt-ag] intron
17 GenBank accessions
65836 RNA-seq supporting reads
2722 UHR pooled cells
4988 Brain
16937 Blood
40464 Neuroblastoma
725 Other
(also 17109 Primates bodymap)
128 bp exon
226 bp [gt-ag] intron
17 GenBank accessions
56343 RNA-seq supporting reads
2508 UHR pooled cells
4817 Brain
6757 Blood
41548 Neuroblastoma
713 Other
(also 14773 Primates bodymap)
94 bp exon
646 bp [gt-ag] intron
17 GenBank accessions
55486 RNA-seq supporting reads
2215 UHR pooled cells
4447 Brain
7811 Blood
40183 Neuroblastoma
830 Other
(also 9697 Primates bodymap)
155 bp exon
85 bp [gt-ag] intron
17 GenBank accessions
63428 RNA-seq supporting reads
2738 UHR pooled cells
5323 Brain
10530 Blood
43753 Neuroblastoma
1084 Other
(also 16426 Primates bodymap)
319 bp exon
80 bp [gt-ag] intron
17 GenBank accessions
48738 RNA-seq supporting reads
1944 UHR pooled cells
3414 Brain
10722 Blood
31960 Neuroblastoma
698 Other
(also 12419 Primates bodymap)
78 bp exon
73 bp [gt-ag] intron
17 GenBank accessions
52754 RNA-seq supporting reads
2534 UHR pooled cells
4162 Brain
10352 Blood
35036 Neuroblastoma
670 Other
(also 12644 Primates bodymap)
162 bp exon
165 bp [gt-ag] intron
17 GenBank accessions
64401 RNA-seq supporting reads
3047 UHR pooled cells
5048 Brain
16213 Blood
39274 Neuroblastoma
819 Other
(also 19097 Primates bodymap)
105 bp exon
97 bp [gt-ag] intron
17 GenBank accessions
56181 RNA-seq supporting reads
2661 UHR pooled cells
4509 Brain
12053 Blood
36225 Neuroblastoma
733 Other
(also 11517 Primates bodymap)
96 bp exon
277 bp [gt-ag] intron
17 GenBank accessions
60628 RNA-seq supporting reads
3178 UHR pooled cells
4949 Brain
10826 Blood
40765 Neuroblastoma
910 Other
(also 10283 Primates bodymap)
126 bp exon
997 bp [gt-ag] intron
17 GenBank accessions
69850 RNA-seq supporting reads
3438 UHR pooled cells
5433 Brain
14475 Blood
45479 Neuroblastoma
1025 Other
(also 12311 Primates bodymap)
153 bp exon
85 bp [gt-ag] intron
17 GenBank accessions
41783 RNA-seq supporting reads
2058 UHR pooled cells
3131 Brain
4453 Blood
31490 Neuroblastoma
651 Other
(also 6360 Primates bodymap)
155 bp exon
81 bp [gt-ag] intron
17 GenBank accessions
50228 RNA-seq supporting reads
2530 UHR pooled cells
3932 Brain
5358 Blood
37646 Neuroblastoma
762 Other
(also 6593 Primates bodymap)
127 bp exon
106 bp [gt-ag] intron
17 GenBank accessions
50198 RNA-seq supporting reads
2429 UHR pooled cells
3854 Brain
6929 Blood
36148 Neuroblastoma
838 Other
(also 7739 Primates bodymap)
184 bp exon
74 bp [gt-ag] intron
18 GenBank accessions
51171 RNA-seq supporting reads
2851 UHR pooled cells
4442 Brain
5008 Blood
38050 Neuroblastoma
820 Other
(also 5805 Primates bodymap)
158 bp exon
132 bp [gc-ag] intron
18 GenBank accessions
38616 RNA-seq supporting reads
2040 UHR pooled cells
2936 Brain
5596 Blood
27466 Neuroblastoma
578 Other
(also 2761 Primates bodymap)
179 bp exon
1110 bp [gt-ag] intron
18 GenBank accessions
47497 RNA-seq supporting reads
3241 UHR pooled cells
4287 Brain
4692 Blood
34683 Neuroblastoma
594 Other
(also 8925 Primates bodymap)
139 bp exon
87 bp [gt-ag] intron
17 GenBank accessions
51301 RNA-seq supporting reads
3078 UHR pooled cells
4483 Brain
3426 Blood
39694 Neuroblastoma
620 Other
(also 7955 Primates bodymap)
357 bp exon
74 bp [gt-ag] intron
17 GenBank accessions
50300 RNA-seq supporting reads
3222 UHR pooled cells
4174 Brain
4289 Blood
38001 Neuroblastoma
614 Other
(also 10462 Primates bodymap)
84 bp exon
170 bp [gt-ag] intron
17 GenBank accessions
55724 RNA-seq supporting reads
4154 UHR pooled cells
4858 Brain
9019 Blood
37057 Neuroblastoma
636 Other
(also 14590 Primates bodymap)
105 bp exon
94 bp [gt-ag] intron
17 GenBank accessions
70071 RNA-seq supporting reads
5417 UHR pooled cells
7150 Brain
9980 Blood
46712 Neuroblastoma
812 Other
(also 16805 Primates bodymap)
99 bp exon
899 bp [gt-ag] intron
17 GenBank accessions
28041 RNA-seq supporting reads
2488 UHR pooled cells
3540 Brain
3775 Blood
17837 Neuroblastoma
401 Other
(also 7068 Primates bodymap)
3381 bp exon
108 bp [gt-ag] intron
17 GenBank accessions
54195 RNA-seq supporting reads
6088 UHR pooled cells
6291 Brain
4302 Blood
36414 Neuroblastoma
1100 Other
(also 8046 Primates bodymap)
7243 bp exon
4 accessions, NM_201378.2
some from mammary gland (seen once)
placenta (once)
Validated 3' end, 1 accession
7243 bp exon
241 bp exon
241 bp exon
657 bp [gt-ag] intron
3 GenBank accessions
7951 RNA-seq supporting reads
300 UHR pooled cells
77 Brain
5311 Blood
2243 Neuroblastoma
20 Other
(also 4803 Primates bodymap)
62 bp exon
390 bp [gt-ag] intron
39 GenBank accessions
42072 RNA-seq supporting reads
2325 UHR pooled cells
1799 Brain
15334 Blood
22290 Neuroblastoma
324 Other
(also 11097 Primates bodymap)
90 bp exon
908 bp [gt-ag] intron
31 GenBank accessions
38829 RNA-seq supporting reads
2859 UHR pooled cells
2804 Brain
14204 Blood
18409 Neuroblastoma
553 Other
(also 20816 Primates bodymap)
78 bp exon
93 bp [gt-ag] intron
35 GenBank accessions
57072 RNA-seq supporting reads
2863 UHR pooled cells
4293 Brain
13740 Blood
35300 Neuroblastoma
876 Other
(also 20016 Primates bodymap)
93 bp exon
964 bp [gt-ag] intron
35 GenBank accessions
55347 RNA-seq supporting reads
2549 UHR pooled cells
4271 Brain
11582 Blood
36078 Neuroblastoma
867 Other
(also 20399 Primates bodymap)
167 bp exon
534 bp [gt-ag] intron
24 GenBank accessions
69740 RNA-seq supporting reads
2855 UHR pooled cells
5492 Brain
15528 Blood
44909 Neuroblastoma
956 Other
(also 21386 Primates bodymap)
116 bp exon
80 bp [gt-ag] intron
22 GenBank accessions
57609 RNA-seq supporting reads
2282 UHR pooled cells
4393 Brain
11863 Blood
38226 Neuroblastoma
845 Other
(also 19329 Primates bodymap)
107 bp exon
81 bp [gt-ag] intron
21 GenBank accessions
39047 RNA-seq supporting reads
1521 UHR pooled cells
3133 Brain
7684 Blood
26139 Neuroblastoma
570 Other
(also 11087 Primates bodymap)
120 bp exon
79 bp [gt-ag] intron
17 GenBank accessions
51865 RNA-seq supporting reads
2513 UHR pooled cells
4576 Brain
8028 Blood
35924 Neuroblastoma
824 Other
(also 6677 Primates bodymap)
96 bp exon
189 bp [gt-ag] intron
17 GenBank accessions
65836 RNA-seq supporting reads
2722 UHR pooled cells
4988 Brain
16937 Blood
40464 Neuroblastoma
725 Other
(also 17109 Primates bodymap)
128 bp exon
226 bp [gt-ag] intron
17 GenBank accessions
56343 RNA-seq supporting reads
2508 UHR pooled cells
4817 Brain
6757 Blood
41548 Neuroblastoma
713 Other
(also 14773 Primates bodymap)
94 bp exon
646 bp [gt-ag] intron
17 GenBank accessions
55486 RNA-seq supporting reads
2215 UHR pooled cells
4447 Brain
7811 Blood
40183 Neuroblastoma
830 Other
(also 9697 Primates bodymap)
155 bp exon
85 bp [gt-ag] intron
17 GenBank accessions
63428 RNA-seq supporting reads
2738 UHR pooled cells
5323 Brain
10530 Blood
43753 Neuroblastoma
1084 Other
(also 16426 Primates bodymap)
319 bp exon
80 bp [gt-ag] intron
17 GenBank accessions
48738 RNA-seq supporting reads
1944 UHR pooled cells
3414 Brain
10722 Blood
31960 Neuroblastoma
698 Other
(also 12419 Primates bodymap)
78 bp exon
73 bp [gt-ag] intron
17 GenBank accessions
52754 RNA-seq supporting reads
2534 UHR pooled cells
4162 Brain
10352 Blood
35036 Neuroblastoma
670 Other
(also 12644 Primates bodymap)
162 bp exon
165 bp [gt-ag] intron
17 GenBank accessions
64401 RNA-seq supporting reads
3047 UHR pooled cells
5048 Brain
16213 Blood
39274 Neuroblastoma
819 Other
(also 19097 Primates bodymap)
105 bp exon
97 bp [gt-ag] intron
17 GenBank accessions
56181 RNA-seq supporting reads
2661 UHR pooled cells
4509 Brain
12053 Blood
36225 Neuroblastoma
733 Other
(also 11517 Primates bodymap)
96 bp exon
277 bp [gt-ag] intron
17 GenBank accessions
60628 RNA-seq supporting reads
3178 UHR pooled cells
4949 Brain
10826 Blood
40765 Neuroblastoma
910 Other
(also 10283 Primates bodymap)
126 bp exon
997 bp [gt-ag] intron
17 GenBank accessions
69850 RNA-seq supporting reads
3438 UHR pooled cells
5433 Brain
14475 Blood
45479 Neuroblastoma
1025 Other
(also 12311 Primates bodymap)
153 bp exon
85 bp [gt-ag] intron
17 GenBank accessions
41783 RNA-seq supporting reads
2058 UHR pooled cells
3131 Brain
4453 Blood
31490 Neuroblastoma
651 Other
(also 6360 Primates bodymap)
155 bp exon
81 bp [gt-ag] intron
17 GenBank accessions
50228 RNA-seq supporting reads
2530 UHR pooled cells
3932 Brain
5358 Blood
37646 Neuroblastoma
762 Other
(also 6593 Primates bodymap)
127 bp exon
106 bp [gt-ag] intron
17 GenBank accessions
50198 RNA-seq supporting reads
2429 UHR pooled cells
3854 Brain
6929 Blood
36148 Neuroblastoma
838 Other
(also 7739 Primates bodymap)
184 bp exon
74 bp [gt-ag] intron
18 GenBank accessions
51171 RNA-seq supporting reads
2851 UHR pooled cells
4442 Brain
5008 Blood
38050 Neuroblastoma
820 Other
(also 5805 Primates bodymap)
158 bp exon
132 bp [gc-ag] intron
18 GenBank accessions
38616 RNA-seq supporting reads
2040 UHR pooled cells
2936 Brain
5596 Blood
27466 Neuroblastoma
578 Other
(also 2761 Primates bodymap)
179 bp exon
1110 bp [gt-ag] intron
18 GenBank accessions
47497 RNA-seq supporting reads
3241 UHR pooled cells
4287 Brain
4692 Blood
34683 Neuroblastoma
594 Other
(also 8925 Primates bodymap)
139 bp exon
87 bp [gt-ag] intron
17 GenBank accessions
51301 RNA-seq supporting reads
3078 UHR pooled cells
4483 Brain
3426 Blood
39694 Neuroblastoma
620 Other
(also 7955 Primates bodymap)
357 bp exon
74 bp [gt-ag] intron
17 GenBank accessions
50300 RNA-seq supporting reads
3222 UHR pooled cells
4174 Brain
4289 Blood
38001 Neuroblastoma
614 Other
(also 10462 Primates bodymap)
84 bp exon
170 bp [gt-ag] intron
17 GenBank accessions
55724 RNA-seq supporting reads
4154 UHR pooled cells
4858 Brain
9019 Blood
37057 Neuroblastoma
636 Other
(also 14590 Primates bodymap)
105 bp exon
94 bp [gt-ag] intron
17 GenBank accessions
70071 RNA-seq supporting reads
5417 UHR pooled cells
7150 Brain
9980 Blood
46712 Neuroblastoma
812 Other
(also 16805 Primates bodymap)
99 bp exon
899 bp [gt-ag] intron
17 GenBank accessions
28041 RNA-seq supporting reads
2488 UHR pooled cells
3540 Brain
3775 Blood
17837 Neuroblastoma
401 Other
(also 7068 Primates bodymap)
3381 bp exon
108 bp [gt-ag] intron
17 GenBank accessions
54195 RNA-seq supporting reads
6088 UHR pooled cells
6291 Brain
4302 Blood
36414 Neuroblastoma
1100 Other
(also 8046 Primates bodymap)
7243 bp exon
3 accessions, NM_201384.1
Validated 3' end, 1 accession
7243 bp exon
104 bp exon
104 bp exon
5955 bp [gt-ag] intron
3 GenBank accessions
313 RNA-seq supporting reads
5 UHR pooled cells
29 Brain
274 Neuroblastoma
5 Other
(also 3306 Primates bodymap)
62 bp exon
390 bp [gt-ag] intron
39 GenBank accessions
42072 RNA-seq supporting reads
2325 UHR pooled cells
1799 Brain
15334 Blood
22290 Neuroblastoma
324 Other
(also 11097 Primates bodymap)
90 bp exon
908 bp [gt-ag] intron
31 GenBank accessions
38829 RNA-seq supporting reads
2859 UHR pooled cells
2804 Brain
14204 Blood
18409 Neuroblastoma
553 Other
(also 20816 Primates bodymap)
78 bp exon
93 bp [gt-ag] intron
35 GenBank accessions
57072 RNA-seq supporting reads
2863 UHR pooled cells
4293 Brain
13740 Blood
35300 Neuroblastoma
876 Other
(also 20016 Primates bodymap)
93 bp exon
964 bp [gt-ag] intron
35 GenBank accessions
55347 RNA-seq supporting reads
2549 UHR pooled cells
4271 Brain
11582 Blood
36078 Neuroblastoma
867 Other
(also 20399 Primates bodymap)
167 bp exon
534 bp [gt-ag] intron
24 GenBank accessions
69740 RNA-seq supporting reads
2855 UHR pooled cells
5492 Brain
15528 Blood
44909 Neuroblastoma
956 Other
(also 21386 Primates bodymap)
116 bp exon
80 bp [gt-ag] intron
22 GenBank accessions
57609 RNA-seq supporting reads
2282 UHR pooled cells
4393 Brain
11863 Blood
38226 Neuroblastoma
845 Other
(also 19329 Primates bodymap)
107 bp exon
81 bp [gt-ag] intron
21 GenBank accessions
39047 RNA-seq supporting reads
1521 UHR pooled cells
3133 Brain
7684 Blood
26139 Neuroblastoma
570 Other
(also 11087 Primates bodymap)
120 bp exon
79 bp [gt-ag] intron
17 GenBank accessions
51865 RNA-seq supporting reads
2513 UHR pooled cells
4576 Brain
8028 Blood
35924 Neuroblastoma
824 Other
(also 6677 Primates bodymap)
96 bp exon
189 bp [gt-ag] intron
17 GenBank accessions
65836 RNA-seq supporting reads
2722 UHR pooled cells
4988 Brain
16937 Blood
40464 Neuroblastoma
725 Other
(also 17109 Primates bodymap)
128 bp exon
226 bp [gt-ag] intron
17 GenBank accessions
56343 RNA-seq supporting reads
2508 UHR pooled cells
4817 Brain
6757 Blood
41548 Neuroblastoma
713 Other
(also 14773 Primates bodymap)
94 bp exon
646 bp [gt-ag] intron
17 GenBank accessions
55486 RNA-seq supporting reads
2215 UHR pooled cells
4447 Brain
7811 Blood
40183 Neuroblastoma
830 Other
(also 9697 Primates bodymap)
155 bp exon
85 bp [gt-ag] intron
17 GenBank accessions
63428 RNA-seq supporting reads
2738 UHR pooled cells
5323 Brain
10530 Blood
43753 Neuroblastoma
1084 Other
(also 16426 Primates bodymap)
319 bp exon
80 bp [gt-ag] intron
17 GenBank accessions
48738 RNA-seq supporting reads
1944 UHR pooled cells
3414 Brain
10722 Blood
31960 Neuroblastoma
698 Other
(also 12419 Primates bodymap)
78 bp exon
73 bp [gt-ag] intron
17 GenBank accessions
52754 RNA-seq supporting reads
2534 UHR pooled cells
4162 Brain
10352 Blood
35036 Neuroblastoma
670 Other
(also 12644 Primates bodymap)
162 bp exon
165 bp [gt-ag] intron
17 GenBank accessions
64401 RNA-seq supporting reads
3047 UHR pooled cells
5048 Brain
16213 Blood
39274 Neuroblastoma
819 Other
(also 19097 Primates bodymap)
105 bp exon
97 bp [gt-ag] intron
17 GenBank accessions
56181 RNA-seq supporting reads
2661 UHR pooled cells
4509 Brain
12053 Blood
36225 Neuroblastoma
733 Other
(also 11517 Primates bodymap)
96 bp exon
277 bp [gt-ag] intron
17 GenBank accessions
60628 RNA-seq supporting reads
3178 UHR pooled cells
4949 Brain
10826 Blood
40765 Neuroblastoma
910 Other
(also 10283 Primates bodymap)
126 bp exon
997 bp [gt-ag] intron
17 GenBank accessions
69850 RNA-seq supporting reads
3438 UHR pooled cells
5433 Brain
14475 Blood
45479 Neuroblastoma
1025 Other
(also 12311 Primates bodymap)
153 bp exon
85 bp [gt-ag] intron
17 GenBank accessions
41783 RNA-seq supporting reads
2058 UHR pooled cells
3131 Brain
4453 Blood
31490 Neuroblastoma
651 Other
(also 6360 Primates bodymap)
155 bp exon
81 bp [gt-ag] intron
17 GenBank accessions
50228 RNA-seq supporting reads
2530 UHR pooled cells
3932 Brain
5358 Blood
37646 Neuroblastoma
762 Other
(also 6593 Primates bodymap)
127 bp exon
106 bp [gt-ag] intron
17 GenBank accessions
50198 RNA-seq supporting reads
2429 UHR pooled cells
3854 Brain
6929 Blood
36148 Neuroblastoma
838 Other
(also 7739 Primates bodymap)
184 bp exon
74 bp [gt-ag] intron
18 GenBank accessions
51171 RNA-seq supporting reads
2851 UHR pooled cells
4442 Brain
5008 Blood
38050 Neuroblastoma
820 Other
(also 5805 Primates bodymap)
158 bp exon
132 bp [gc-ag] intron
18 GenBank accessions
38616 RNA-seq supporting reads
2040 UHR pooled cells
2936 Brain
5596 Blood
27466 Neuroblastoma
578 Other
(also 2761 Primates bodymap)
179 bp exon
1110 bp [gt-ag] intron
18 GenBank accessions
47497 RNA-seq supporting reads
3241 UHR pooled cells
4287 Brain
4692 Blood
34683 Neuroblastoma
594 Other
(also 8925 Primates bodymap)
139 bp exon
87 bp [gt-ag] intron
17 GenBank accessions
51301 RNA-seq supporting reads
3078 UHR pooled cells
4483 Brain
3426 Blood
39694 Neuroblastoma
620 Other
(also 7955 Primates bodymap)
357 bp exon
74 bp [gt-ag] intron
17 GenBank accessions
50300 RNA-seq supporting reads
3222 UHR pooled cells
4174 Brain
4289 Blood
38001 Neuroblastoma
614 Other
(also 10462 Primates bodymap)
84 bp exon
170 bp [gt-ag] intron
17 GenBank accessions
55724 RNA-seq supporting reads
4154 UHR pooled cells
4858 Brain
9019 Blood
37057 Neuroblastoma
636 Other
(also 14590 Primates bodymap)
105 bp exon
94 bp [gt-ag] intron
17 GenBank accessions
70071 RNA-seq supporting reads
5417 UHR pooled cells
7150 Brain
9980 Blood
46712 Neuroblastoma
812 Other
(also 16805 Primates bodymap)
99 bp exon
899 bp [gt-ag] intron
17 GenBank accessions
28041 RNA-seq supporting reads
2488 UHR pooled cells
3540 Brain
3775 Blood
17837 Neuroblastoma
401 Other
(also 7068 Primates bodymap)
3381 bp exon
108 bp [gt-ag] intron
17 GenBank accessions
54195 RNA-seq supporting reads
6088 UHR pooled cells
6291 Brain
4302 Blood
36414 Neuroblastoma
1100 Other
(also 8046 Primates bodymap)
7243 bp exon
3 accessions, NM_201381.1
Validated 3' end, 1 accession
7243 bp exon
195 bp exon
195 bp exon
15033 bp [gt-ag] intron
12 GenBank accessions
13063 RNA-seq supporting reads
700 UHR pooled cells
1114 Brain
948 Blood
10116 Neuroblastoma
185 Other
(also 1355 Primates bodymap)
62 bp exon
390 bp [gt-ag] intron
39 GenBank accessions
42072 RNA-seq supporting reads
2325 UHR pooled cells
1799 Brain
15334 Blood
22290 Neuroblastoma
324 Other
(also 11097 Primates bodymap)
90 bp exon
908 bp [gt-ag] intron
31 GenBank accessions
38829 RNA-seq supporting reads
2859 UHR pooled cells
2804 Brain
14204 Blood
18409 Neuroblastoma
553 Other
(also 20816 Primates bodymap)
78 bp exon
93 bp [gt-ag] intron
35 GenBank accessions
57072 RNA-seq supporting reads
2863 UHR pooled cells
4293 Brain
13740 Blood
35300 Neuroblastoma
876 Other
(also 20016 Primates bodymap)
93 bp exon
964 bp [gt-ag] intron
35 GenBank accessions
55347 RNA-seq supporting reads
2549 UHR pooled cells
4271 Brain
11582 Blood
36078 Neuroblastoma
867 Other
(also 20399 Primates bodymap)
167 bp exon
534 bp [gt-ag] intron
24 GenBank accessions
69740 RNA-seq supporting reads
2855 UHR pooled cells
5492 Brain
15528 Blood
44909 Neuroblastoma
956 Other
(also 21386 Primates bodymap)
116 bp exon
80 bp [gt-ag] intron
22 GenBank accessions
57609 RNA-seq supporting reads
2282 UHR pooled cells
4393 Brain
11863 Blood
38226 Neuroblastoma
845 Other
(also 19329 Primates bodymap)
107 bp exon
81 bp [gt-ag] intron
21 GenBank accessions
39047 RNA-seq supporting reads
1521 UHR pooled cells
3133 Brain
7684 Blood
26139 Neuroblastoma
570 Other
(also 11087 Primates bodymap)
120 bp exon
79 bp [gt-ag] intron
17 GenBank accessions
51865 RNA-seq supporting reads
2513 UHR pooled cells
4576 Brain
8028 Blood
35924 Neuroblastoma
824 Other
(also 6677 Primates bodymap)
96 bp exon
189 bp [gt-ag] intron
17 GenBank accessions
65836 RNA-seq supporting reads
2722 UHR pooled cells
4988 Brain
16937 Blood
40464 Neuroblastoma
725 Other
(also 17109 Primates bodymap)
128 bp exon
226 bp [gt-ag] intron
17 GenBank accessions
56343 RNA-seq supporting reads
2508 UHR pooled cells
4817 Brain
6757 Blood
41548 Neuroblastoma
713 Other
(also 14773 Primates bodymap)
94 bp exon
646 bp [gt-ag] intron
17 GenBank accessions
55486 RNA-seq supporting reads
2215 UHR pooled cells
4447 Brain
7811 Blood
40183 Neuroblastoma
830 Other
(also 9697 Primates bodymap)
155 bp exon
85 bp [gt-ag] intron
17 GenBank accessions
63428 RNA-seq supporting reads
2738 UHR pooled cells
5323 Brain
10530 Blood
43753 Neuroblastoma
1084 Other
(also 16426 Primates bodymap)
319 bp exon
80 bp [gt-ag] intron
17 GenBank accessions
48738 RNA-seq supporting reads
1944 UHR pooled cells
3414 Brain
10722 Blood
31960 Neuroblastoma
698 Other
(also 12419 Primates bodymap)
78 bp exon
73 bp [gt-ag] intron
17 GenBank accessions
52754 RNA-seq supporting reads
2534 UHR pooled cells
4162 Brain
10352 Blood
35036 Neuroblastoma
670 Other
(also 12644 Primates bodymap)
162 bp exon
165 bp [gt-ag] intron
17 GenBank accessions
64401 RNA-seq supporting reads
3047 UHR pooled cells
5048 Brain
16213 Blood
39274 Neuroblastoma
819 Other
(also 19097 Primates bodymap)
105 bp exon
97 bp [gt-ag] intron
17 GenBank accessions
56181 RNA-seq supporting reads
2661 UHR pooled cells
4509 Brain
12053 Blood
36225 Neuroblastoma
733 Other
(also 11517 Primates bodymap)
96 bp exon
277 bp [gt-ag] intron
17 GenBank accessions
60628 RNA-seq supporting reads
3178 UHR pooled cells
4949 Brain
10826 Blood
40765 Neuroblastoma
910 Other
(also 10283 Primates bodymap)
126 bp exon
997 bp [gt-ag] intron
17 GenBank accessions
69850 RNA-seq supporting reads
3438 UHR pooled cells
5433 Brain
14475 Blood
45479 Neuroblastoma
1025 Other
(also 12311 Primates bodymap)
153 bp exon
85 bp [gt-ag] intron
17 GenBank accessions
41783 RNA-seq supporting reads
2058 UHR pooled cells
3131 Brain
4453 Blood
31490 Neuroblastoma
651 Other
(also 6360 Primates bodymap)
155 bp exon
81 bp [gt-ag] intron
17 GenBank accessions
50228 RNA-seq supporting reads
2530 UHR pooled cells
3932 Brain
5358 Blood
37646 Neuroblastoma
762 Other
(also 6593 Primates bodymap)
127 bp exon
106 bp [gt-ag] intron
17 GenBank accessions
50198 RNA-seq supporting reads
2429 UHR pooled cells
3854 Brain
6929 Blood
36148 Neuroblastoma
838 Other
(also 7739 Primates bodymap)
184 bp exon
74 bp [gt-ag] intron
18 GenBank accessions
51171 RNA-seq supporting reads
2851 UHR pooled cells
4442 Brain
5008 Blood
38050 Neuroblastoma
820 Other
(also 5805 Primates bodymap)
158 bp exon
132 bp [gc-ag] intron
18 GenBank accessions
38616 RNA-seq supporting reads
2040 UHR pooled cells
2936 Brain
5596 Blood
27466 Neuroblastoma
578 Other
(also 2761 Primates bodymap)
179 bp exon
1110 bp [gt-ag] intron
18 GenBank accessions
47497 RNA-seq supporting reads
3241 UHR pooled cells
4287 Brain
4692 Blood
34683 Neuroblastoma
594 Other
(also 8925 Primates bodymap)
139 bp exon
87 bp [gt-ag] intron
17 GenBank accessions
51301 RNA-seq supporting reads
3078 UHR pooled cells
4483 Brain
3426 Blood
39694 Neuroblastoma
620 Other
(also 7955 Primates bodymap)
357 bp exon
74 bp [gt-ag] intron
17 GenBank accessions
50300 RNA-seq supporting reads
3222 UHR pooled cells
4174 Brain
4289 Blood
38001 Neuroblastoma
614 Other
(also 10462 Primates bodymap)
84 bp exon
170 bp [gt-ag] intron
17 GenBank accessions
55724 RNA-seq supporting reads
4154 UHR pooled cells
4858 Brain
9019 Blood
37057 Neuroblastoma
636 Other
(also 14590 Primates bodymap)
105 bp exon
94 bp [gt-ag] intron
17 GenBank accessions
70071 RNA-seq supporting reads
5417 UHR pooled cells
7150 Brain
9980 Blood
46712 Neuroblastoma
812 Other
(also 16805 Primates bodymap)
99 bp exon
899 bp [gt-ag] intron
17 GenBank accessions
28041 RNA-seq supporting reads
2488 UHR pooled cells
3540 Brain
3775 Blood
17837 Neuroblastoma
401 Other
(also 7068 Primates bodymap)
3381 bp exon
108 bp [gt-ag] intron
17 GenBank accessions
54195 RNA-seq supporting reads
6088 UHR pooled cells
6291 Brain
4302 Blood
36414 Neuroblastoma
1100 Other
(also 8046 Primates bodymap)
7243 bp exon
8 accessions, NM_201379.1
some from amygdala (seen once)
lung (once), mammary gland (once)
Validated 3' end, 1 accession
7243 bp exon
56 bp exon
56 bp exon
7657 bp [gt-ag] intron
1 GenBank accession
32 RNA-seq supporting reads
4 UHR pooled cells
1 Brain
2 Blood
25 Neuroblastoma
(also 97 Primates bodymap)
62 bp exon
390 bp [gt-ag] intron
39 GenBank accessions
42072 RNA-seq supporting reads
2325 UHR pooled cells
1799 Brain
15334 Blood
22290 Neuroblastoma
324 Other
(also 11097 Primates bodymap)
90 bp exon
908 bp [gt-ag] intron
31 GenBank accessions
38829 RNA-seq supporting reads
2859 UHR pooled cells
2804 Brain
14204 Blood
18409 Neuroblastoma
553 Other
(also 20816 Primates bodymap)
78 bp exon
93 bp [gt-ag] intron
35 GenBank accessions
57072 RNA-seq supporting reads
2863 UHR pooled cells
4293 Brain
13740 Blood
35300 Neuroblastoma
876 Other
(also 20016 Primates bodymap)
93 bp exon
964 bp [gt-ag] intron
35 GenBank accessions
55347 RNA-seq supporting reads
2549 UHR pooled cells
4271 Brain
11582 Blood
36078 Neuroblastoma
867 Other
(also 20399 Primates bodymap)
167 bp exon
534 bp [gt-ag] intron
24 GenBank accessions
69740 RNA-seq supporting reads
2855 UHR pooled cells
5492 Brain
15528 Blood
44909 Neuroblastoma
956 Other
(also 21386 Primates bodymap)
1 accession from mammary gland
37 bp exon
205 bp exon
19902 bp [gt-ag] intron
1 GenBank accession
62 bp exon
390 bp [gt-ag] intron
39 GenBank accessions
42072 RNA-seq supporting reads
2325 UHR pooled cells
1799 Brain
15334 Blood
22290 Neuroblastoma
324 Other
(also 11097 Primates bodymap)
90 bp exon
908 bp [gt-ag] intron
31 GenBank accessions
38829 RNA-seq supporting reads
2859 UHR pooled cells
2804 Brain
14204 Blood
18409 Neuroblastoma
553 Other
(also 20816 Primates bodymap)
78 bp exon
93 bp [gt-ag] intron
35 GenBank accessions
57072 RNA-seq supporting reads
2863 UHR pooled cells
4293 Brain
13740 Blood
35300 Neuroblastoma
876 Other
(also 20016 Primates bodymap)
93 bp exon
964 bp [gt-ag] intron
35 GenBank accessions
55347 RNA-seq supporting reads
2549 UHR pooled cells
4271 Brain
11582 Blood
36078 Neuroblastoma
867 Other
(also 20399 Primates bodymap)
1 accession from placenta
51 bp exon
47 bp exon
1327 bp [gc-ag] intron
11 GenBank accessions
11534 RNA-seq supporting reads
271 UHR pooled cells
1085 Brain
3335 Blood
6711 Neuroblastoma
132 Other
(also 1316 Primates bodymap)
65 bp exon
Sequence gap 21469 bp
116 bp exon
15033 bp [gt-ag] intron
12 GenBank accessions
13063 RNA-seq supporting reads
700 UHR pooled cells
1114 Brain
948 Blood
10116 Neuroblastoma
185 Other
(also 1355 Primates bodymap)
62 bp exon
390 bp [gt-ag] intron
39 GenBank accessions
42072 RNA-seq supporting reads
2325 UHR pooled cells
1799 Brain
15334 Blood
22290 Neuroblastoma
324 Other
(also 11097 Primates bodymap)
3 accessions
57 bp exon
465 bp exon
2 accessions, some from colon normal (seen once)
lung normal (once)
465 bp exon
163 bp exon
163 bp exon
7692 bp [gt-ag] intron
1 GenBank accession
3 RNA-seq supporting reads
2 UHR pooled cells
1 Neuroblastoma
(also 4 Primates bodymap)
62 bp exon
390 bp [gt-ag] intron
39 GenBank accessions
42072 RNA-seq supporting reads
2325 UHR pooled cells
1799 Brain
15334 Blood
22290 Neuroblastoma
324 Other
(also 11097 Primates bodymap)
90 bp exon
908 bp [gt-ag] intron
31 GenBank accessions
38829 RNA-seq supporting reads
2859 UHR pooled cells
2804 Brain
14204 Blood
18409 Neuroblastoma
553 Other
(also 20816 Primates bodymap)
78 bp exon
93 bp [gt-ag] intron
35 GenBank accessions
57072 RNA-seq supporting reads
2863 UHR pooled cells
4293 Brain
13740 Blood
35300 Neuroblastoma
876 Other
(also 20016 Primates bodymap)
93 bp exon
93 bp exon
964 bp [gt-ag] intron
35 GenBank accessions
55347 RNA-seq supporting reads
2549 UHR pooled cells
4271 Brain
11582 Blood
36078 Neuroblastoma
867 Other
(also 20399 Primates bodymap)
1 accession from mammary gland
97 bp exon
43 bp exon
36484 bp [gt-ag] intron
10 GenBank accessions
21107 RNA-seq supporting reads
713 UHR pooled cells
2100 Brain
4705 Blood
13310 Neuroblastoma
279 Other
(also 3384 Primates bodymap)
62 bp exon
390 bp [gt-ag] intron
39 GenBank accessions
42072 RNA-seq supporting reads
2325 UHR pooled cells
1799 Brain
15334 Blood
22290 Neuroblastoma
324 Other
(also 11097 Primates bodymap)
90 bp exon
366 bp [gt-ag] intron
1 GenBank accession
10439 RNA-seq supporting reads
4 UHR pooled cells
948 Brain
2 Blood
9449 Neuroblastoma
36 Other
(also 281 Primates bodymap)
125 bp exon
1 accession from lung normal
125 bp exon
137 bp exon
137 bp exon
657 bp [gt-ag] intron
3 GenBank accessions
7951 RNA-seq supporting reads
300 UHR pooled cells
77 Brain
5311 Blood
2243 Neuroblastoma
20 Other
(also 4803 Primates bodymap)
79 bp exon
1 accession from lung normal
79 bp exon
Alternative mRNAs are shown aligned from 5' to 3' on a virtual genome where introns have been shrunk to a minimal length. Exon size is proportional to length, intron height reflects the number of cDNAs supporting each intron, the small numbers show the support of the introns in deep sequencing (with details in mouse-over) . Introns of the same color are identical, of different colors are different. 'Good proteins' are pink, partial or not-good proteins are yellow, uORFs are green. 5' cap or3' poly A flags show completeness of the transcript.
Read more...
Mouse over the ending of each transcript gives tissues from which the supporting cDNAs were extracted. Details on tissue of origin for each intron and exon is available from the
intron and exons table .
Click on any transcript to open the specific mRNA page, to see the exact cDNA clone support and eventual SNPs and to get details on tissues, sequences, mRNA and protein annotations. Proteins supported by a single continuous cDNA sequence lead to underlining the name/ending of the variant. Names not underlined result from cDNA concatenation in the coding region and should be experimentally checked.
Introns are depicted by broken lines; the height of the top of each intron reflects the relative number of clones supporting this intron.
]^[ A pink broken line denotes an intron with standard boundaries (gt-ag or gc-ag) that is exactly supported (i.e. a cDNA sequence exactly matches the genome over 16 bp, 8 on both sides of the intron).
] ^ ] A blue broken line denotes non-standard introns, exactly supported, but with non-standard at-ac or any other boundaries.
]-[ Pink and
] - ] blue straight lines represent 'fuzzy' introns of the standard and non-standard types respectively, those introns do not follow the 16 bp rule. Black straight lines ]-[denote gaps in the alignments.
Exons: Wide filled pink areas represent putative protein coding regions, narrow empty pink boxes represent the 5'UTR (on the left) and 3' UTR (on the right). Flags identify validated endings: cap site on the 5' side, polyadenylation site on the 3' side. Filled flags correspond to frequent events while empty flags have lesser supporting cDNAs (yet all are validated); at the 3' side, black flags are associated to the main AATAAA signal,
blue flags to any single letter variant of the main . More explanations are given in the
gene help file
Sequences: click on the numbers to get the DNA
Gene neighbors and Navigator on chromosome 8q24
R
GRINA
D
C
R
P
SPATC1
C
I
R
P
R
D
C
I
P
EPPK1
D
C
I
R
P
PLEC
C
I
R
P
PARP10
C
R
P
OPLAH
10
20kb
0
moroya, 1 accession
GRINA, 224 accessions
8 variants
SPATC1, 28 accessions
2 variants
glyblu, 2 accessions
swaforby, 1 accession
sworzobu, 1 accession
duzarbu, 1 accession
sawoyby, 1 accession
plawslubu, 5 accessions
swarforby, 1 accession
glawblu, 2 accessions
sawwoyby, 2 accessions
plerslubu, 1 accession
byfoyby, 1 accession
plorslubu, 1 accession
derzarbu, 1 accession
soywoyby, 1 accession
veyvawbu, 1 accession
tawoyby, 1 accession
klorslubu, 1 accession
rowoyby, 1 accession
steeforby, 1 accession
kloyslubu, 1 accession
hosu, 4 accessions
sihure, 3 accessions
reewoyby, 7 accessions
roywoyby, 2 accessions
rerwoyby, 1 accession
reywoyby, 4 accessions
plyslubu, 1 accession
ploslubu, 1 accession
plarslubu, 2 accessions
gleeblu, 4 accessions
suwoyby, 2 accessions
glarblu, 4 accessions
weeblaby, 2 accessions
rateybo, 1 accession
dawzarbu, 1 accession
serwoyby, 2 accessions
pleyslubu, 1 accession
seywoyby, 1 accession
sorwoyby, 1 accession
ployslubu, 1 accession
fuzarbu, 1 accession
NRBP2, 211 accessions
10 variants
EPPK1, 43 accessions
PLEC, 292 accessions, 15 variants
PARP10, 418 accessions
30 variants
OPLAH, 68 accessions, 7 variants
ZOOM OUT
D :disease,
C :conserved,
I :interactions,
R :regulation,
P :publications
Read more...
GSDMD
C
R
P
R
R
R
TIGD5
C
ZNF623
C
R
P
ZNF707
C
I
R
P
MAPK15
C
I
R
P
G
R
P
C
R
R
GRINA
D
C
R
P
SPATC1
C
I
R
P
R
EXOSC4
C
I
R
P
GPAA1
D
C
I
R
P
CYC1
C
I
R
P
MAF1
C
I
R
P
KIAA1875
C
I
R
P
C8orf30A
C
I
R
P
HEATR7A
C
R
P
SCXB
C
R
P
C
R
C
R
SCXA
C
R
P
BREA2
C
R
P
ZC3H3
C
R
C
R
P
C8orf73
D
C
I
R
P
EEF1DandNAPRT1
C
I
R
P
PYCRL
D
C
R
P
TSTA3
C
R
G
C
R
R
R
D
C
R
P
FAM83H
R
G
D
C
I
R
P
SCRIB
C
I
R
P
PUF60
C
R
P
NRBP2
D
C
I
P
EPPK1
D
C
I
R
P
PLEC
C
I
R
P
PARP10
C
R
P
OPLAH
R
C
I
R
P
SHARPIN
R
C
R
R
D
C
I
R
P
BOP1
100kb
0
GSDMD, 584 accessions
20 variants
klawskobu, 3 accessions
2 variants
jabeeby, 4 accessions
2 variants
torvyby, 1 accession
TIGD5, 71 accessions
ZNF623, 130 accessions
6 variants
ZNF707, 114 accessions
33 variants
MAPK15, 65 accessions
9 variants
LOC100128338, 59 accessions
4 variants
koybeeby, 4 accessions
2 variants
meroya, 2 accessions, 2 variants
moroya, 1 accession
GRINA, 224 accessions
8 variants
SPATC1, 28 accessions
2 variants
glyblu, 2 accessions
EXOSC4, 164 accessions
4 variants
GPAA1, 377 accessions
15 variants
CYC1, 542 accessions, 6 variants
MAF1, 548 accessions, 7 variants
KIAA1875, 32 accessions
7 variants
C8orf30A, 133 accessions
6 variants
HEATR7A, 176 accessions
24 variants
SCXB, 28 accessions, 2 variants
mihemu, 117 accessions
4 variants
muhemu, 90 accessions
10 variants
SCXA, 27 accessions, 2 variants
lawwoyby, 1 accession
floslubu, 1 accession
flarslubu, 1 accession
flawslubu, 3 accessions
mywoyby, 1 accession
fleeslubu, 3 accessions
mowoyby, 1 accession
floyslubu, 1 accession
yuhure, 1 accession
meywoyby, 3 accessions
glyslubu, 1 accession
snuzobu, 2 accessions
nawwoyby, 18 accessions
sneyzobu, 1 accession
gleyslubu, 2 accessions
glorslubu, 2 accessions
sporzobu, 1 accession
hiso, 5 accessions
BREA2, 12 accessions
puwoyby, 1 accession
powoyby, 1 accession
peewoyby, 2 accessions
kloslubu, 4 accessions
klarslubu, 1 accession
klawslubu, 1 accession
mahure, 6 accessions
smoforby, 4 accessions
peywoyby, 2 accessions
porwoyby, 1 accession
rywoyby, 1 accession
snyforby, 1 accession
snawforby, 1 accession
swozobu, 1 accession
kleyslubu, 4 accessions
stawforby, 1 accession
swaforby, 1 accession
sworzobu, 1 accession
duzarbu, 1 accession
sawoyby, 1 accession
plawslubu, 5 accessions
swarforby, 1 accession
glawblu, 2 accessions
sawwoyby, 2 accessions
plerslubu, 1 accession
byfoyby, 1 accession
plorslubu, 1 accession
derzarbu, 1 accession
soywoyby, 1 accession
veyvawbu, 1 accession
tawoyby, 1 accession
tuwoyby, 1 accession
skaslubu, 1 accession
towoyby, 1 accession
teewoyby, 2 accessions
skawslubu, 22 accessions
foyzarby, 1 accession
vawoyby, 2 accessions
vywoyby, 1 accession
jozarbu, 1 accession
jawzarbu, 1 accession
jeezarbu, 1 accession
veewoyby, 2 accessions
woyblaby, 1 accession
veywoyby, 3 accessions
jerzarbu, 1 accession
joyzarbu, 1 accession
slaslubu, 3 accessions
kumoya, 4 accessions
geyzarby, 1 accession
weyvyby, 22 accessions
kimoya, 1 accession
teywoyby, 1 accession
temeya, 4 accessions
larwoyby, 2 accessions
zawbly, 2 accessions
fluslubu, 3 accessions
pawgor, 1 accession
lerwoyby, 1 accession
slozobu, 1 accession
lorwoyby, 2 accessions
loywoyby, 1 accession
mawoyby, 1 accession
flerslubu, 2 accessions
zeebly, 7 accessions
florslubu, 1 accession
marwoyby, 1 accession
sloyforby, 1 accession
sublaby, 1 accession
glaslubu, 2 accessions
morwoyby, 3 accessions
nawoyby, 1 accession
sloyzobu, 1 accession
glawslubu, 1 accession
gleeslubu, 3 accessions
spazobu, 1 accession
timeya, 1 accession
norwoyby, 2 accessions
noywoyby, 6 accessions
spozobu, 1 accession
klaslubu, 1 accession
pawwoyby, 1 accession
klyslubu, 5 accessions
kluslubu, 1 accession
poywoyby, 3 accessions
stazobu, 1 accession
styzobu, 3 accessions
swyzobu, 2 accessions
swuzobu, 1 accession
klorslubu, 1 accession
rowoyby, 1 accession
steeforby, 1 accession
kloyslubu, 1 accession
hosu, 4 accessions
sihure, 3 accessions
reewoyby, 7 accessions
roywoyby, 2 accessions
rerwoyby, 1 accession
reywoyby, 4 accessions
plyslubu, 1 accession
ploslubu, 1 accession
plarslubu, 2 accessions
gleeblu, 4 accessions
suwoyby, 2 accessions
glarblu, 4 accessions
weeblaby, 2 accessions
rateybo, 1 accession
dawzarbu, 1 accession
serwoyby, 2 accessions
pleyslubu, 1 accession
seywoyby, 1 accession
sorwoyby, 1 accession
ployslubu, 1 accession
fuzarbu, 1 accession
tywoyby, 1 accession
barfoyby, 1 accession
skoslubu, 4 accessions
weyblaby, 2 accessions
glablu, 6 accessions
glerblu, 1 accession
feyzarbu, 4 accessions
guzarbu, 1 accession
garzarbu, 2 accessions
nerslarbu, 1 accession
goyzarbu, 1 accession
torwoyby, 2 accessions
toywoyby, 1 accession
skerslubu, 1 accession
jazarbu, 1 accession
jarzarbu, 3 accessions
vawwoyby, 1 accession
verwoyby, 2 accessions
peygor, 1 accession
vorwoyby, 2 accessions
voywoyby, 2 accessions
sawgee, 3 accessions
jeyzarbu, 5 accessions
skorslubu, 1 accession
skoyslubu, 1 accession
wawoyby, 7 accessions
kazarbu, 1 accession
boyfoyby, 1 accession
glorblu, 10 accessions
kyzarbu, 1 accession
wowoyby, 2 accessions
neeslarbu, 1 accession
smoyzerbu, 4 accessions
snazerbu, 1 accession
snyzerbu, 2 accessions
skeeslubu, 1 accession
snerzerbu, 1 accession
snorzerbu, 1 accession
florgeyby, 1 accession
gyzarby, 10 accessions
snoyzerbu, 1 accession
gerzarby, 1 accession
ZC3H3, 130 accessions
4 variants
leewoyby, 1 accession
kleyblu, 39 accessions
C8orf73, 72 accessions
12 variants
EEF1DandNAPRT1, 1258 accessions
69 variants
PYCRL, 209 accessions
7 variants
TSTA3, 453 accessions
19 variants
chubly, 5 accessions, 2 variants
LOC100130274, 4 accessions
chawbly, 4 accessions
kobeeby, 5 accessions
FAM83H, 157 accessions
3 variants
yohure, 7 accessions, 2 variants
LOC100127925, 2 accessions
SCRIB, 274 accessions
13 variants
PUF60, 515 accessions
21 variants
NRBP2, 211 accessions
10 variants
EPPK1, 43 accessions
PLEC, 292 accessions, 15 variants
PARP10, 418 accessions
30 variants
OPLAH, 68 accessions, 7 variants
tarwoyby, 9 accessions
3 variants
SHARPIN, 335 accessions
15 variants
guzarby, 6 accessions
2 variants
rahemu, 266 accessions
7 variants
zoyly, 6 accessions, 2 variants
BOP1, 466 accessions, 11 variants
ZOOM IN
D :disease,
C :conserved,
I :interactions,
R :regulation,
P :publications
Read more...
Annotated mRNA diagrams
The mRNAs diagrams with the aligned cDNA sequence accessions and their mismatches are available in the mRNA pages accessible from the tab at the top of the page, or here:
In Flash:
.f , .c , .b , .h , .e , .a , .g , .d , .m , .o-u , .n , .i , .j , .l , .k .
or in GIF:
.f , .c , .b , .h , .e , .a , .g , .d , .m , .o-u , .n , .i , .j , .l , .k
Bibliography:   65 articles in PubMed
? Gene Summary
Gene on genome
mRNA: .a , .b , .c , .d , .e , .f , .g , .h , .i , .j , .k , .l , .m , .n , .o-u
Alternative mRNAs features, proteins, introns, exons, sequences
Expression Tissue
Function, regulation, related genes D C I
To
mine knowledge about the gene, please click the
'Gene Summary' or the
'Function, regulation, related genes ' tab at the top of the page. The
'Gene Summary' page includes all we learnt about the gene, functional annotations of neighboring genes, maps, links to other sites and the bibliography. The
'Function, regulation, related genes ' page includes Diseases (D), Pathways, GO annotations, conserved domains (C), interactions (I) reference into function, and pointers to all genes with the same functional annotation.
To
compare alternative variants , their summarized annotations, predicted proteins, introns and exons, or to access any sequence, click the
'Alternative mRNAs features' tab. To see a
specific mRNA variant diagram, sequence and annotation, click the variant name in the
'mRNA' tab. To examine
expression data from all cDNAs clustered in this gene by AceView, click the
'Expression tissue' .
If you know more about this gene, or found errors, please
share your knowledge. Thank you !