RefSeq annotates 2 representative transcripts (NM included in AceView variants .a and .c), but Homo sapiens cDNA sequences in GenBank, dbEST, Trace and SRA, filtered against clone rearrangements, coaligned on the genome and clustered in a minimal non-redundant way by the manually supervised AceView program, support at least 36 spliced variants .
AceView synopsis, each blue text links to tables and details
Note that this locus is complex: it appears to produce several proteins with no sequence overlap.
Expression: According to AceView, this gene is
expressed at high level , 2.8 times the average gene in this release. The
sequence of this gene is defined by
324 GenBank accessions from 291 cDNA clones, some from brain (seen 36 times), lung (14), kidney (9), thymus (9), eye (8), hypothalamus (8), uterus (8) and 105 other
tissues . We annotate
structural defects or features in 10 cDNA clones.
Alternative mRNA variants and regulation: The gene contains
50 distinct introns (49 gt-ag, 1 gc-ag). Transcription produces
41 different mRNAs , 36 alternatively spliced variants and 5 unspliced forms. There are 6 probable
alternative promotors , 6 non overlapping alternative last exons and 12 validated
alternative polyadenylation sites (see the
diagram ). The mRNAs appear to differ by truncation of the 5' end, truncation of the 3' end, presence or absence of 29
cassette exons , overlapping exons with different boundaries. 323 bp of this gene
are antisense to spliced gene swokley , raising the possibility of regulated alternate expression.
7 variants were isolated
in vivo , despite the fact that they are predicted targets of
nonsense mediated mRNA decay (NMD).
Efficacy of translation may be reduced by the presence of a shorter translated product (
uORF ) initiating at an AUG upstream of the main open reading frame (in variant cAug10, dAug10, vcAug10).
Function: There are
9 articles specifically referring to this gene in PubMed. Functionally, the gene has been tested for association to a
disease (Hypertension). Proteins are expected to have molecular
functions (ATP binding, nucleoside-triphosphatase activity, nucleotide binding) and to
localize in various compartments (cytoplasm, membrane, nucleolus, nucleus). Putative
protein interactors have been described (CRMP1, RPL5ANDSNORD21ANDSNORA66, TTF2).
Protein coding potential: 30 spliced mRNAs putatively encode
good proteins , altogether
29 different isoforms (17 complete, 3 COOH complete, 9 partial ), some containing
domains ATPase family associated with various cellular activities (AAA), ATPase family associated with various cellular activities (AAA), AAA domain (dynein-related subfamily) [Pfam], some transmembrane domains, a peroxisomal domain
[Psort2] . The remaining 11 mRNA variants (6 spliced, 5 unspliced; 6 partial) appear not to encode good proteins. Finally proteins from this gene may be modulated by
acetylation; phosphorylation , as detailed at PhosphoSite.
Please quote:
AceView: a comprehensive cDNA-supported gene and transcripts annotation, Genome Biology 2006, 7(Suppl 1):S12 .
Map on chromosome 1, links to other databases and other names
Map: This gene NVL maps on chromosome 1, at 1q41-q42.2 according to Entrez Gene. In AceView, it covers
103.05 kb , from 224518089 to 224415036 (NCBI 37, August 2010), on the reverse strand.
Links to: , manual annotations from
GAD ,
PhosphoSite , the
SNP view, gene overviews from
Entrez Gene 4931 ,
GeneCards , expression data from
ECgene ,
UniGene , molecular and other annotations from
UCSC , or our
GOLD analysis.
The previous AceView annotation is
here .
Other names: The gene is also known as NVL, LOC4931. It has been described as nuclear valosin-containing protein-like, NVLp, OTTHUMP00000216593, OTTHUMP00000216594, OTTHUMP00000216600, nuclear VCP-like protein.
Closest AceView homologs in other species
?
The closest mouse gene , according to BlastP, is the AceView gene
Nvl (e=10
-56 ).
The closest C.elegans gene , according to BlastP, is the AceView/WormGene
2F297 (e=0.46), which may contain interesting functional annotation.
The closest A.thaliana genes , according to BlastP, are the AceView genes
CDC48C (e=4 10
-18 ),
CIP111 (e=10
-17 ),
PEX1 (e=10
-17 ),
AT3G53230 (e=3 10
-17 ),
CDC48 (e=4 10
-18 ),
AT5G03340 (e=6 10
-17 ),
PEX6 (e=4 10
-16 ),
ATFTSH6\/FTSH6 (e=5 10
-16 ),
VAR1 (e=9 10
-16 ),
CDC48B (e=10
-15 ),
VAR2 (e=10
-15 ),
FTSH1 (e=2 10
-15 ),
FTSH8 (e=5 10
-15 ), which may contain interesting functional annotation
NVL
Gene expression in 15 primates, 16 tissues, from the NHPRTR project in sFPKM
BAB
SkeletalMuscle
WholeBlood
CHP
Kidney
Liver
Lung
Spleen
CMC
CMM
Cerebellum
HUM
Brain
Colon
Heart
LymphNode
Ovary
Testis
JMI
BoneMarrow
MLM
OWL
PTM
RMC
RMI
Pituitary
SQM
Thymus
MST
SMY
RTL
9.41
16.4
5.79
2.70
5.04
2.35
6.65
5.79
15.3
20.2
18.8
3.57
3.10
2.90
6.21
2.35
2.35
5.40
1.18
8.19
6.21
5.04
15.3
5.79
16.4
12.4
14.3
11.6
21.6
20.2
18.8
10.1
15.3
9.41
13.3
12.4
3.57
4.10
3.82
14.3
12.4
8.78
14.3
10.1
10.8
8.78
21.6
20.2
12.4
30.6
21.6
17.6
24.8
32.8
24.8
16.4
35.1
30.6
35.1
5.40
4.10
4.39
13.3
9.41
5.04
10.8
6.65
18.8
8.19
14.3
10.8
7.64
10.1
16.4
18.8
18.8
12.4
13.3
12.4
16.4
11.6
12.4
20.2
21.6
18.8
23.2
15.3
8.78
10.8
8.19
17.6
13.3
7.64
10.8
7.13
14.3
21.6
10.8
20.2
17.6
13.3
17.6
21.6
13.3
18.8
21.6
18.8
30.6
16.4
26.6
10.1
24.8
16.4
30.6
35.1
11.6
10.8
23.2
32.8
18.8
21.6
35.1
13.3
14.3
10.8
12.4
8.19
17.6
18.8
11.6
20.2
21.6
17.6
18.8
18.8
17.6
21.6
10.1
16.4
12.4
6.65
7.64
9.41
6.21
14.3
7.64
18.8
17.6
23.2
16.4
7.13
15.3
8.78
23.2
11.6
35.1
21.6
Expression
quantiles
None
Weak
1
2
3
4
5
6
7
8
10
20
This gene
All genes
log2 distributions
RNA-seq gene expression profile across 16 selected tissues from the Non-Human Primates Reference Transcriptome Resource (link to
NHPRTR project ).
- Primates:
Apes (
HUM : Human (Illumina BodyMap 2),
CHP : Chimpanzee),
Old World monkeys (
PTM : Pig-Tailed Macaque,
JMI Japanese Macaque,
RMI Rhesus Macaque Indian,
RMC Rhesus Macaque Chinese,
CMM Cynomolgus Macaque Mauritian,
CMC Cynomolgus Macaque Chinese,
BAB Olive Baboon,
SMY Sooty Mangabey);
New World monkeys (
MST common Marmoset,
SQM Squirrel Monkey,
OWL Owl Monkey); and
Lemurs (
MLM Mouse Lemur,
RTL Ring-Tailed Lemur).
- The level for significantly expressed genes is color coded in 8 equal sized bins (light to dark green). Light gray is for weak not-accurately measured expression (2 to 8 reads above intergenic background); dark gray for no expression or no sequence conservation (0 read in gene). The plot to the right shows the distribution of measured expression values in all tissues for
all genes (blue) and for
this gene (green) , in Magic index = log
2 (1000 sFPKM).
You may also examine the strand-specific
genome coverage plots on the experimental AceView/Magic hub at UCSC , by tissue or by species. Tracks may be
slow to load ; please reload if some tracks come up yellow-greenish, and thanks to UCSC for the great work!.
Read more...
About UCSC tracks: you may enjoy the plots for the summed coverage over all primates' libraries (top track), summarizing 3 terabases of stranded RNA-seq. Fragments mapping on the + strand of the genome (from genes on the + strand) are red (or dark), on minus strand blue (or light) and antisense transcribed areas are black or overlaid. The vertical scale for each track is self-adapting. Homozygous SNPs tracks are also presented.
About mapping: Primates body map RNA-seq data were stringently mapped to the human genome using the NCBI Magic pipeline. Normalized results are shown as significant FPKM (sFPKM), which includes corrections on F, K and M, computed from parameters measured directly in each RNA-seq experiment, to render the expression measures more significant and more robust to experimental biases. Only fragments with both reads mapped uniquely and over at least 80+80 bases ending with 8 exact bases on each side of each read, and facing each other in a single site or gene, are included in the computation of the sFPKM/index, in the coverage plots, and in the determination of homozygous SNPs (minimum coverage 10, minimum allele frequency 95%). But be aware that genes whose sequence evolved to become too distant from Human cannot be measured well, this bias can be appreciated in the per-species coverage plots at UCSC.
About libraries: For non-human primates, total RNA libraries used TruSeq, ribozero and the stranded UDG protocol. The human 2010 libraries used the polyA selected non-stranded protocol, with short reads (50, 75 or 50+50 bases); furthermore the insert lengths are larger in human than in the non-human primates (average insert size 187 bp in non-human primates versus 232 bp in human). These protocol differences may impact expression measures for the non polyadenylated genes (or genes with shorter or occasional polyA tails), for the pseudogenes or close gene families (specificity is reduced in humans due to shorter reads), and for the very short genes.
Complete gene on genome diagram:
Compact gene diagram
Gene NVL
5'
3'
encoded on minus strand of chromosome 1 from 224,518,089 to 224,415,036
13719
12451
18673
15287
29572
41118
37508
28226
31071
40396
39786
52557
50338
34063
46945
52133
39637
30286
51756
54947
44169
45009
a
[NM]
13719
12451
18673
15287
797
37508
28226
31071
40396
39786
52557
50338
34063
46945
52133
39637
30286
51756
54947
44169
45009
b
13569
18673
15287
29572
41118
37508
28226
31071
40396
39786
52557
50338
34063
46945
52133
39637
30286
51756
54947
44169
45009
c
[NM]
13569
18673
2642
41118
37508
28226
31071
40396
39786
52557
50338
34063
46945
52133
39637
30286
51756
54947
44169
45009
d
13569
18673
420
37508
28226
3722
5412
40396
39786
52557
50338
34063
46945
52133
39637
30286
51756
54947
44169
45009
e
13569
18673
15287
797
37508
28226
31071
40396
39786
52557
50338
34063
46945
52133
39637
30286
51756
54947
44169
45009
f
13569
18673
15287
29572
41118
37508
28226
31071
40396
39786
52557
50338
34063
46945
52133
342
51756
54947
492
267
45009
g
478
18673
15287
29572
41118
37508
28226
31071
40396
39786
h
13719
12451
18673
3546
2530
29572
41118
797
31071
40396
39786
52557
i
332
30286
51756
54947
44169
vc
13719
12451
18673
15287
29572
41118
797
j
13569
18673
3546
39637
30286
51756
54947
44169
45009
k
56
29572
41118
37508
28226
31071
l
13719
12451
18673
2750
2530
29572
41118
37508
m
30
41118
37508
28226
n
13719
12451
18673
15287
392
41118
37508
28226
3722
vd
vk-u
1698
51756
54947
44169
45009
o
13569
18673
3546
119
41118
37508
p
13569
18673
2750
2530
29572
q
vs-u
vt-u
54947
44169
45009
vi
13719
12451
18673
2750
1043
29572
r
1597
2290
45009
vn
vp-u
41118
37508
s
13719
12451
18673
2750
t
13719
12451
18673
99
u
45009
vq
13719
12451
18673
3546
1043
29572
41118
va
13719
12451
18673
3546
vb
vr-u
30286
51756
276
45009
vg
13569
18673
99
1
29572
ve
13719
12451
18673
2642
41118
vf
29572
vh
13569
18673
2750
51756
276
45009
vj
13569
86
15287
29572
vl
13719
244
18673
2750
2530
797
vm
13569
18673
2750
1043
29572
vo
5kb
0
317 bp exon
317 bp exon
3606 bp [gt-ag] intron
85 GenBank accessions
13634 RNA-seq supporting reads
3341 UHR pooled cells
535 Brain
1675 Blood
8011 Neuroblastoma
72 Other
(also 7081 Primates bodymap)
74 bp exon
8460 bp [gt-ag] intron
85 GenBank accessions
12366 RNA-seq supporting reads
3208 UHR pooled cells
465 Brain
1441 Blood
7190 Neuroblastoma
62 Other
(also 6317 Primates bodymap)
53 bp exon
84 bp [gt-ag] intron
148 GenBank accessions
18525 RNA-seq supporting reads
2135 UHR pooled cells
686 Brain
2113 Blood
13544 Neuroblastoma
47 Other
(also 6281 Primates bodymap)
100 bp exon
5836 bp [gt-ag] intron
109 GenBank accessions
15178 RNA-seq supporting reads
3273 UHR pooled cells
447 Brain
1500 Blood
9912 Neuroblastoma
46 Other
(also 5450 Primates bodymap)
58 bp exon
3536 bp [gt-ag] intron
116 GenBank accessions
29456 RNA-seq supporting reads
4465 UHR pooled cells
1200 Brain
3361 Blood
20318 Neuroblastoma
112 Other
(also 5367 Primates bodymap)
273 bp exon
2824 bp [gt-ag] intron
69 GenBank accessions
41049 RNA-seq supporting reads
5931 UHR pooled cells
1712 Brain
2944 Blood
30281 Neuroblastoma
181 Other
(also 6780 Primates bodymap)
133 bp exon
221 bp [gt-ag] intron
48 GenBank accessions
37460 RNA-seq supporting reads
5676 UHR pooled cells
1332 Brain
4143 Blood
26153 Neuroblastoma
156 Other
(also 5199 Primates bodymap)
77 bp exon
878 bp [gt-ag] intron
45 GenBank accessions
28181 RNA-seq supporting reads
4359 UHR pooled cells
975 Brain
2946 Blood
19778 Neuroblastoma
123 Other
(also 2540 Primates bodymap)
135 bp exon
3059 bp [gt-ag] intron
34 GenBank accessions
31037 RNA-seq supporting reads
4467 UHR pooled cells
1157 Brain
3181 Blood
22121 Neuroblastoma
111 Other
(also 3724 Primates bodymap)
102 bp exon
3943 bp [gt-ag] intron
39 GenBank accessions
40357 RNA-seq supporting reads
6138 UHR pooled cells
1701 Brain
3739 Blood
28585 Neuroblastoma
194 Other
(also 6626 Primates bodymap)
118 bp exon
2089 bp [gt-ag] intron
40 GenBank accessions
39746 RNA-seq supporting reads
6454 UHR pooled cells
1730 Brain
3262 Blood
28127 Neuroblastoma
173 Other
(also 5868 Primates bodymap)
145 bp exon
4533 bp [gt-ag] intron
39 GenBank accessions
52518 RNA-seq supporting reads
8572 UHR pooled cells
2236 Brain
3200 Blood
38305 Neuroblastoma
205 Other
(also 5169 Primates bodymap)
250 bp exon
1490 bp [gt-ag] intron
29 GenBank accessions
50309 RNA-seq supporting reads
8170 UHR pooled cells
2230 Brain
3938 Blood
35793 Neuroblastoma
178 Other
(also 6652 Primates bodymap)
219 bp exon
1644 bp [gt-ag] intron
25 GenBank accessions
34038 RNA-seq supporting reads
5295 UHR pooled cells
1633 Brain
3332 Blood
23609 Neuroblastoma
169 Other
(also 3369 Primates bodymap)
105 bp exon
4840 bp [gt-ag] intron
29 GenBank accessions
46916 RNA-seq supporting reads
7996 UHR pooled cells
2345 Brain
3251 Blood
33186 Neuroblastoma
138 Other
(also 4409 Primates bodymap)
63 bp exon
5664 bp [gt-ag] intron
31 GenBank accessions
52102 RNA-seq supporting reads
9037 UHR pooled cells
2609 Brain
3124 Blood
37159 Neuroblastoma
173 Other
(also 5638 Primates bodymap)
120 bp exon
7205 bp [gt-ag] intron
29 GenBank accessions
39608 RNA-seq supporting reads
6764 UHR pooled cells
2015 Brain
1981 Blood
28713 Neuroblastoma
135 Other
(also 4416 Primates bodymap)
100 bp exon
17715 bp [gt-ag] intron
36 GenBank accessions
30250 RNA-seq supporting reads
4927 UHR pooled cells
1521 Brain
1426 Blood
22244 Neuroblastoma
132 Other
(also 2493 Primates bodymap)
107 bp exon
13629 bp [gt-ag] intron
54 GenBank accessions
51702 RNA-seq supporting reads
8471 UHR pooled cells
2679 Brain
1940 Blood
38461 Neuroblastoma
151 Other
(also 4003 Primates bodymap)
77 bp exon
3216 bp [gt-ag] intron
66 GenBank accessions
54881 RNA-seq supporting reads
9164 UHR pooled cells
2894 Brain
990 Blood
41673 Neuroblastoma
160 Other
(also 3510 Primates bodymap)
89 bp exon
1904 bp [gt-ag] intron
72 GenBank accessions
44097 RNA-seq supporting reads
6843 UHR pooled cells
2217 Brain
2237 Blood
32690 Neuroblastoma
110 Other
(also 3487 Primates bodymap)
71 bp exon
3555 bp [gt-ag] intron
81 GenBank accessions
44928 RNA-seq supporting reads
6990 UHR pooled cells
2336 Brain
2534 Blood
32959 Neuroblastoma
109 Other
(also 3725 Primates bodymap)
336 bp exon
135 accessions, NM_002533.2
some from brain (seen 8 times)
lung (7), breast, tumor tissue (4)
eye (4), kidney (4)
Validated 3' end, 1 accession
Validated 3' end, 2 accessions
Validated 3' end, 2 accessions
336 bp exon
111 bp exon
111 bp exon
3606 bp [gt-ag] intron
85 GenBank accessions
13634 RNA-seq supporting reads
3341 UHR pooled cells
535 Brain
1675 Blood
8011 Neuroblastoma
72 Other
(also 7081 Primates bodymap)
74 bp exon
8460 bp [gt-ag] intron
85 GenBank accessions
12366 RNA-seq supporting reads
3208 UHR pooled cells
465 Brain
1441 Blood
7190 Neuroblastoma
62 Other
(also 6317 Primates bodymap)
53 bp exon
84 bp [gt-ag] intron
148 GenBank accessions
18525 RNA-seq supporting reads
2135 UHR pooled cells
686 Brain
2113 Blood
13544 Neuroblastoma
47 Other
(also 6281 Primates bodymap)
100 bp exon
5836 bp [gt-ag] intron
109 GenBank accessions
15178 RNA-seq supporting reads
3273 UHR pooled cells
447 Brain
1500 Blood
9912 Neuroblastoma
46 Other
(also 5450 Primates bodymap)
58 bp exon
6633 bp [gt-ag] intron
14 GenBank accessions
783 RNA-seq supporting reads
97 UHR pooled cells
27 Brain
49 Blood
605 Neuroblastoma
5 Other
(also 116 Primates bodymap)
133 bp exon
221 bp [gt-ag] intron
48 GenBank accessions
37460 RNA-seq supporting reads
5676 UHR pooled cells
1332 Brain
4143 Blood
26153 Neuroblastoma
156 Other
(also 5199 Primates bodymap)
77 bp exon
878 bp [gt-ag] intron
45 GenBank accessions
28181 RNA-seq supporting reads
4359 UHR pooled cells
975 Brain
2946 Blood
19778 Neuroblastoma
123 Other
(also 2540 Primates bodymap)
135 bp exon
3059 bp [gt-ag] intron
34 GenBank accessions
31037 RNA-seq supporting reads
4467 UHR pooled cells
1157 Brain
3181 Blood
22121 Neuroblastoma
111 Other
(also 3724 Primates bodymap)
102 bp exon
3943 bp [gt-ag] intron
39 GenBank accessions
40357 RNA-seq supporting reads
6138 UHR pooled cells
1701 Brain
3739 Blood
28585 Neuroblastoma
194 Other
(also 6626 Primates bodymap)
118 bp exon
2089 bp [gt-ag] intron
40 GenBank accessions
39746 RNA-seq supporting reads
6454 UHR pooled cells
1730 Brain
3262 Blood
28127 Neuroblastoma
173 Other
(also 5868 Primates bodymap)
145 bp exon
4533 bp [gt-ag] intron
39 GenBank accessions
52518 RNA-seq supporting reads
8572 UHR pooled cells
2236 Brain
3200 Blood
38305 Neuroblastoma
205 Other
(also 5169 Primates bodymap)
250 bp exon
1490 bp [gt-ag] intron
29 GenBank accessions
50309 RNA-seq supporting reads
8170 UHR pooled cells
2230 Brain
3938 Blood
35793 Neuroblastoma
178 Other
(also 6652 Primates bodymap)
219 bp exon
1644 bp [gt-ag] intron
25 GenBank accessions
34038 RNA-seq supporting reads
5295 UHR pooled cells
1633 Brain
3332 Blood
23609 Neuroblastoma
169 Other
(also 3369 Primates bodymap)
105 bp exon
4840 bp [gt-ag] intron
29 GenBank accessions
46916 RNA-seq supporting reads
7996 UHR pooled cells
2345 Brain
3251 Blood
33186 Neuroblastoma
138 Other
(also 4409 Primates bodymap)
63 bp exon
5664 bp [gt-ag] intron
31 GenBank accessions
52102 RNA-seq supporting reads
9037 UHR pooled cells
2609 Brain
3124 Blood
37159 Neuroblastoma
173 Other
(also 5638 Primates bodymap)
120 bp exon
7205 bp [gt-ag] intron
29 GenBank accessions
39608 RNA-seq supporting reads
6764 UHR pooled cells
2015 Brain
1981 Blood
28713 Neuroblastoma
135 Other
(also 4416 Primates bodymap)
100 bp exon
17715 bp [gt-ag] intron
36 GenBank accessions
30250 RNA-seq supporting reads
4927 UHR pooled cells
1521 Brain
1426 Blood
22244 Neuroblastoma
132 Other
(also 2493 Primates bodymap)
107 bp exon
13629 bp [gt-ag] intron
54 GenBank accessions
51702 RNA-seq supporting reads
8471 UHR pooled cells
2679 Brain
1940 Blood
38461 Neuroblastoma
151 Other
(also 4003 Primates bodymap)
77 bp exon
3216 bp [gt-ag] intron
66 GenBank accessions
54881 RNA-seq supporting reads
9164 UHR pooled cells
2894 Brain
990 Blood
41673 Neuroblastoma
160 Other
(also 3510 Primates bodymap)
89 bp exon
1904 bp [gt-ag] intron
72 GenBank accessions
44097 RNA-seq supporting reads
6843 UHR pooled cells
2217 Brain
2237 Blood
32690 Neuroblastoma
110 Other
(also 3487 Primates bodymap)
71 bp exon
3555 bp [gt-ag] intron
81 GenBank accessions
44928 RNA-seq supporting reads
6990 UHR pooled cells
2336 Brain
2534 Blood
32959 Neuroblastoma
109 Other
(also 3725 Primates bodymap)
302 bp exon
9 accessions, some from brain (seen once)
Validated 3' end, 1 accession
302 bp exon
130 bp exon
130 bp exon
93 bp uORF
12140 bp [gt-ag] intron
62 GenBank accessions
13507 RNA-seq supporting reads
747 UHR pooled cells
477 Brain
212 Blood
12030 Neuroblastoma
41 Other
(also 303 Primates bodymap)
93 bp uORF
53 bp exon
53 bp exon
84 bp [gt-ag] intron
148 GenBank accessions
18525 RNA-seq supporting reads
2135 UHR pooled cells
686 Brain
2113 Blood
13544 Neuroblastoma
47 Other
(also 6281 Primates bodymap)
100 bp exon
100 bp exon
5836 bp [gt-ag] intron
109 GenBank accessions
15178 RNA-seq supporting reads
3273 UHR pooled cells
447 Brain
1500 Blood
9912 Neuroblastoma
46 Other
(also 5450 Primates bodymap)
58 bp exon
58 bp exon
58 bp exon
3536 bp [gt-ag] intron
116 GenBank accessions
29456 RNA-seq supporting reads
4465 UHR pooled cells
1200 Brain
3361 Blood
20318 Neuroblastoma
112 Other
(also 5367 Primates bodymap)
273 bp exon
273 bp exon
2824 bp [gt-ag] intron
69 GenBank accessions
41049 RNA-seq supporting reads
5931 UHR pooled cells
1712 Brain
2944 Blood
30281 Neuroblastoma
181 Other
(also 6780 Primates bodymap)
133 bp exon
133 bp exon
221 bp [gt-ag] intron
48 GenBank accessions
37460 RNA-seq supporting reads
5676 UHR pooled cells
1332 Brain
4143 Blood
26153 Neuroblastoma
156 Other
(also 5199 Primates bodymap)
77 bp exon
77 bp exon
878 bp [gt-ag] intron
45 GenBank accessions
28181 RNA-seq supporting reads
4359 UHR pooled cells
975 Brain
2946 Blood
19778 Neuroblastoma
123 Other
(also 2540 Primates bodymap)
135 bp exon
135 bp exon
3059 bp [gt-ag] intron
34 GenBank accessions
31037 RNA-seq supporting reads
4467 UHR pooled cells
1157 Brain
3181 Blood
22121 Neuroblastoma
111 Other
(also 3724 Primates bodymap)
102 bp exon
102 bp exon
3943 bp [gt-ag] intron
39 GenBank accessions
40357 RNA-seq supporting reads
6138 UHR pooled cells
1701 Brain
3739 Blood
28585 Neuroblastoma
194 Other
(also 6626 Primates bodymap)
118 bp exon
118 bp exon
2089 bp [gt-ag] intron
40 GenBank accessions
39746 RNA-seq supporting reads
6454 UHR pooled cells
1730 Brain
3262 Blood
28127 Neuroblastoma
173 Other
(also 5868 Primates bodymap)
145 bp exon
145 bp exon
4533 bp [gt-ag] intron
39 GenBank accessions
52518 RNA-seq supporting reads
8572 UHR pooled cells
2236 Brain
3200 Blood
38305 Neuroblastoma
205 Other
(also 5169 Primates bodymap)
250 bp exon
250 bp exon
1490 bp [gt-ag] intron
29 GenBank accessions
50309 RNA-seq supporting reads
8170 UHR pooled cells
2230 Brain
3938 Blood
35793 Neuroblastoma
178 Other
(also 6652 Primates bodymap)
219 bp exon
219 bp exon
1644 bp [gt-ag] intron
25 GenBank accessions
34038 RNA-seq supporting reads
5295 UHR pooled cells
1633 Brain
3332 Blood
23609 Neuroblastoma
169 Other
(also 3369 Primates bodymap)
105 bp exon
105 bp exon
4840 bp [gt-ag] intron
29 GenBank accessions
46916 RNA-seq supporting reads
7996 UHR pooled cells
2345 Brain
3251 Blood
33186 Neuroblastoma
138 Other
(also 4409 Primates bodymap)
63 bp exon
63 bp exon
5664 bp [gt-ag] intron
31 GenBank accessions
52102 RNA-seq supporting reads
9037 UHR pooled cells
2609 Brain
3124 Blood
37159 Neuroblastoma
173 Other
(also 5638 Primates bodymap)
120 bp exon
120 bp exon
7205 bp [gt-ag] intron
29 GenBank accessions
39608 RNA-seq supporting reads
6764 UHR pooled cells
2015 Brain
1981 Blood
28713 Neuroblastoma
135 Other
(also 4416 Primates bodymap)
100 bp exon
100 bp exon
17715 bp [gt-ag] intron
36 GenBank accessions
30250 RNA-seq supporting reads
4927 UHR pooled cells
1521 Brain
1426 Blood
22244 Neuroblastoma
132 Other
(also 2493 Primates bodymap)
107 bp exon
107 bp exon
13629 bp [gt-ag] intron
54 GenBank accessions
51702 RNA-seq supporting reads
8471 UHR pooled cells
2679 Brain
1940 Blood
38461 Neuroblastoma
151 Other
(also 4003 Primates bodymap)
77 bp exon
77 bp exon
3216 bp [gt-ag] intron
66 GenBank accessions
54881 RNA-seq supporting reads
9164 UHR pooled cells
2894 Brain
990 Blood
41673 Neuroblastoma
160 Other
(also 3510 Primates bodymap)
89 bp exon
89 bp exon
1904 bp [gt-ag] intron
72 GenBank accessions
44097 RNA-seq supporting reads
6843 UHR pooled cells
2217 Brain
2237 Blood
32690 Neuroblastoma
110 Other
(also 3487 Primates bodymap)
71 bp exon
71 bp exon
3555 bp [gt-ag] intron
81 GenBank accessions
44928 RNA-seq supporting reads
6990 UHR pooled cells
2336 Brain
2534 Blood
32959 Neuroblastoma
109 Other
(also 3725 Primates bodymap)
337 bp exon
337 bp exon
75 accessions, NM_206840.1
some from brain (seen 11 times)
lung (6), kidney (5)
hypothalamus (4), uterus (4)
capped 5' end, 19 accessions
Validated 3' end, 4 accessions
Validated 3' end, 12 accessions
Validated 3' end, 3 accessions
337 bp exon
116 bp exon
116 bp exon
93 bp uORF
12140 bp [gt-ag] intron
62 GenBank accessions
13507 RNA-seq supporting reads
747 UHR pooled cells
477 Brain
212 Blood
12030 Neuroblastoma
41 Other
(also 303 Primates bodymap)
93 bp uORF
53 bp exon
53 bp exon
84 bp [gt-ag] intron
148 GenBank accessions
18525 RNA-seq supporting reads
2135 UHR pooled cells
686 Brain
2113 Blood
13544 Neuroblastoma
47 Other
(also 6281 Primates bodymap)
100 bp exon
100 bp exon
9430 bp [gt-ag] intron
14 GenBank accessions
2628 RNA-seq supporting reads
259 UHR pooled cells
133 Brain
218 Blood
2004 Neuroblastoma
14 Other
(also 57 Primates bodymap)
273 bp exon
273 bp exon
273 bp exon
2824 bp [gt-ag] intron
69 GenBank accessions
41049 RNA-seq supporting reads
5931 UHR pooled cells
1712 Brain
2944 Blood
30281 Neuroblastoma
181 Other
(also 6780 Primates bodymap)
133 bp exon
133 bp exon
221 bp [gt-ag] intron
48 GenBank accessions
37460 RNA-seq supporting reads
5676 UHR pooled cells
1332 Brain
4143 Blood
26153 Neuroblastoma
156 Other
(also 5199 Primates bodymap)
77 bp exon
77 bp exon
878 bp [gt-ag] intron
45 GenBank accessions
28181 RNA-seq supporting reads
4359 UHR pooled cells
975 Brain
2946 Blood
19778 Neuroblastoma
123 Other
(also 2540 Primates bodymap)
135 bp exon
135 bp exon
3059 bp [gt-ag] intron
34 GenBank accessions
31037 RNA-seq supporting reads
4467 UHR pooled cells
1157 Brain
3181 Blood
22121 Neuroblastoma
111 Other
(also 3724 Primates bodymap)
102 bp exon
102 bp exon
3943 bp [gt-ag] intron
39 GenBank accessions
40357 RNA-seq supporting reads
6138 UHR pooled cells
1701 Brain
3739 Blood
28585 Neuroblastoma
194 Other
(also 6626 Primates bodymap)
118 bp exon
118 bp exon
2089 bp [gt-ag] intron
40 GenBank accessions
39746 RNA-seq supporting reads
6454 UHR pooled cells
1730 Brain
3262 Blood
28127 Neuroblastoma
173 Other
(also 5868 Primates bodymap)
145 bp exon
145 bp exon
4533 bp [gt-ag] intron
39 GenBank accessions
52518 RNA-seq supporting reads
8572 UHR pooled cells
2236 Brain
3200 Blood
38305 Neuroblastoma
205 Other
(also 5169 Primates bodymap)
250 bp exon
250 bp exon
1490 bp [gt-ag] intron
29 GenBank accessions
50309 RNA-seq supporting reads
8170 UHR pooled cells
2230 Brain
3938 Blood
35793 Neuroblastoma
178 Other
(also 6652 Primates bodymap)
219 bp exon
219 bp exon
1644 bp [gt-ag] intron
25 GenBank accessions
34038 RNA-seq supporting reads
5295 UHR pooled cells
1633 Brain
3332 Blood
23609 Neuroblastoma
169 Other
(also 3369 Primates bodymap)
105 bp exon
105 bp exon
4840 bp [gt-ag] intron
29 GenBank accessions
46916 RNA-seq supporting reads
7996 UHR pooled cells
2345 Brain
3251 Blood
33186 Neuroblastoma
138 Other
(also 4409 Primates bodymap)
63 bp exon
63 bp exon
5664 bp [gt-ag] intron
31 GenBank accessions
52102 RNA-seq supporting reads
9037 UHR pooled cells
2609 Brain
3124 Blood
37159 Neuroblastoma
173 Other
(also 5638 Primates bodymap)
120 bp exon
120 bp exon
7205 bp [gt-ag] intron
29 GenBank accessions
39608 RNA-seq supporting reads
6764 UHR pooled cells
2015 Brain
1981 Blood
28713 Neuroblastoma
135 Other
(also 4416 Primates bodymap)
100 bp exon
100 bp exon
17715 bp [gt-ag] intron
36 GenBank accessions
30250 RNA-seq supporting reads
4927 UHR pooled cells
1521 Brain
1426 Blood
22244 Neuroblastoma
132 Other
(also 2493 Primates bodymap)
107 bp exon
107 bp exon
13629 bp [gt-ag] intron
54 GenBank accessions
51702 RNA-seq supporting reads
8471 UHR pooled cells
2679 Brain
1940 Blood
38461 Neuroblastoma
151 Other
(also 4003 Primates bodymap)
77 bp exon
77 bp exon
3216 bp [gt-ag] intron
66 GenBank accessions
54881 RNA-seq supporting reads
9164 UHR pooled cells
2894 Brain
990 Blood
41673 Neuroblastoma
160 Other
(also 3510 Primates bodymap)
89 bp exon
89 bp exon
1904 bp [gt-ag] intron
72 GenBank accessions
44097 RNA-seq supporting reads
6843 UHR pooled cells
2217 Brain
2237 Blood
32690 Neuroblastoma
110 Other
(also 3487 Primates bodymap)
71 bp exon
71 bp exon
3555 bp [gt-ag] intron
81 GenBank accessions
44928 RNA-seq supporting reads
6990 UHR pooled cells
2336 Brain
2534 Blood
32959 Neuroblastoma
109 Other
(also 3725 Primates bodymap)
273 bp exon
273 bp exon
11 accessions, some from brain (seen 2 times)
substantia nigra (2)
adenocarcinoma (once)
amygdala (once), breast
tumor tissue (once)
capped 5' end, 1 accession
273 bp exon
69 bp exon
12140 bp [gt-ag] intron
62 GenBank accessions
13507 RNA-seq supporting reads
747 UHR pooled cells
477 Brain
212 Blood
12030 Neuroblastoma
41 Other
(also 303 Primates bodymap)
53 bp exon
84 bp [gt-ag] intron
148 GenBank accessions
18525 RNA-seq supporting reads
2135 UHR pooled cells
686 Brain
2113 Blood
13544 Neuroblastoma
47 Other
(also 6281 Primates bodymap)
100 bp exon
12527 bp [gt-ag] intron
2 GenBank accessions
418 RNA-seq supporting reads
37 UHR pooled cells
22 Brain
9 Blood
350 Neuroblastoma
(also 4 Primates bodymap)
133 bp exon
133 bp exon
221 bp [gt-ag] intron
48 GenBank accessions
37460 RNA-seq supporting reads
5676 UHR pooled cells
1332 Brain
4143 Blood
26153 Neuroblastoma
156 Other
(also 5199 Primates bodymap)
77 bp exon
878 bp [gt-ag] intron
45 GenBank accessions
28181 RNA-seq supporting reads
4359 UHR pooled cells
975 Brain
2946 Blood
19778 Neuroblastoma
123 Other
(also 2540 Primates bodymap)
135 bp exon
1951 bp [gt-ag] intron
3 GenBank accessions
3719 RNA-seq supporting reads
470 UHR pooled cells
246 Brain
278 Blood
2704 Neuroblastoma
21 Other
(also 17 Primates bodymap)
81 bp exon
1027 bp [gt-ag] intron
3 GenBank accessions
5409 RNA-seq supporting reads
634 UHR pooled cells
293 Brain
502 Blood
3955 Neuroblastoma
25 Other
(also 82 Primates bodymap)
102 bp exon
3943 bp [gt-ag] intron
39 GenBank accessions
40357 RNA-seq supporting reads
6138 UHR pooled cells
1701 Brain
3739 Blood
28585 Neuroblastoma
194 Other
(also 6626 Primates bodymap)
118 bp exon
2089 bp [gt-ag] intron
40 GenBank accessions
39746 RNA-seq supporting reads
6454 UHR pooled cells
1730 Brain
3262 Blood
28127 Neuroblastoma
173 Other
(also 5868 Primates bodymap)
145 bp exon
4533 bp [gt-ag] intron
39 GenBank accessions
52518 RNA-seq supporting reads
8572 UHR pooled cells
2236 Brain
3200 Blood
38305 Neuroblastoma
205 Other
(also 5169 Primates bodymap)
250 bp exon
1490 bp [gt-ag] intron
29 GenBank accessions
50309 RNA-seq supporting reads
8170 UHR pooled cells
2230 Brain
3938 Blood
35793 Neuroblastoma
178 Other
(also 6652 Primates bodymap)
219 bp exon
1644 bp [gt-ag] intron
25 GenBank accessions
34038 RNA-seq supporting reads
5295 UHR pooled cells
1633 Brain
3332 Blood
23609 Neuroblastoma
169 Other
(also 3369 Primates bodymap)
105 bp exon
4840 bp [gt-ag] intron
29 GenBank accessions
46916 RNA-seq supporting reads
7996 UHR pooled cells
2345 Brain
3251 Blood
33186 Neuroblastoma
138 Other
(also 4409 Primates bodymap)
63 bp exon
5664 bp [gt-ag] intron
31 GenBank accessions
52102 RNA-seq supporting reads
9037 UHR pooled cells
2609 Brain
3124 Blood
37159 Neuroblastoma
173 Other
(also 5638 Primates bodymap)
120 bp exon
7205 bp [gt-ag] intron
29 GenBank accessions
39608 RNA-seq supporting reads
6764 UHR pooled cells
2015 Brain
1981 Blood
28713 Neuroblastoma
135 Other
(also 4416 Primates bodymap)
100 bp exon
17715 bp [gt-ag] intron
36 GenBank accessions
30250 RNA-seq supporting reads
4927 UHR pooled cells
1521 Brain
1426 Blood
22244 Neuroblastoma
132 Other
(also 2493 Primates bodymap)
107 bp exon
13629 bp [gt-ag] intron
54 GenBank accessions
51702 RNA-seq supporting reads
8471 UHR pooled cells
2679 Brain
1940 Blood
38461 Neuroblastoma
151 Other
(also 4003 Primates bodymap)
77 bp exon
3216 bp [gt-ag] intron
66 GenBank accessions
54881 RNA-seq supporting reads
9164 UHR pooled cells
2894 Brain
990 Blood
41673 Neuroblastoma
160 Other
(also 3510 Primates bodymap)
89 bp exon
1904 bp [gt-ag] intron
72 GenBank accessions
44097 RNA-seq supporting reads
6843 UHR pooled cells
2217 Brain
2237 Blood
32690 Neuroblastoma
110 Other
(also 3487 Primates bodymap)
71 bp exon
3555 bp [gt-ag] intron
81 GenBank accessions
44928 RNA-seq supporting reads
6990 UHR pooled cells
2336 Brain
2534 Blood
32959 Neuroblastoma
109 Other
(also 3725 Primates bodymap)
217 bp exon
2 accessions, some from brain (seen 2 times)
217 bp exon
69 bp exon
12140 bp [gt-ag] intron
62 GenBank accessions
13507 RNA-seq supporting reads
747 UHR pooled cells
477 Brain
212 Blood
12030 Neuroblastoma
41 Other
(also 303 Primates bodymap)
53 bp exon
84 bp [gt-ag] intron
148 GenBank accessions
18525 RNA-seq supporting reads
2135 UHR pooled cells
686 Brain
2113 Blood
13544 Neuroblastoma
47 Other
(also 6281 Primates bodymap)
100 bp exon
5836 bp [gt-ag] intron
109 GenBank accessions
15178 RNA-seq supporting reads
3273 UHR pooled cells
447 Brain
1500 Blood
9912 Neuroblastoma
46 Other
(also 5450 Primates bodymap)
58 bp exon
58 bp exon
6633 bp [gt-ag] intron
14 GenBank accessions
783 RNA-seq supporting reads
97 UHR pooled cells
27 Brain
49 Blood
605 Neuroblastoma
5 Other
(also 116 Primates bodymap)
133 bp exon
221 bp [gt-ag] intron
48 GenBank accessions
37460 RNA-seq supporting reads
5676 UHR pooled cells
1332 Brain
4143 Blood
26153 Neuroblastoma
156 Other
(also 5199 Primates bodymap)
77 bp exon
878 bp [gt-ag] intron
45 GenBank accessions
28181 RNA-seq supporting reads
4359 UHR pooled cells
975 Brain
2946 Blood
19778 Neuroblastoma
123 Other
(also 2540 Primates bodymap)
135 bp exon
3059 bp [gt-ag] intron
34 GenBank accessions
31037 RNA-seq supporting reads
4467 UHR pooled cells
1157 Brain
3181 Blood
22121 Neuroblastoma
111 Other
(also 3724 Primates bodymap)
102 bp exon
3943 bp [gt-ag] intron
39 GenBank accessions
40357 RNA-seq supporting reads
6138 UHR pooled cells
1701 Brain
3739 Blood
28585 Neuroblastoma
194 Other
(also 6626 Primates bodymap)
118 bp exon
2089 bp [gt-ag] intron
40 GenBank accessions
39746 RNA-seq supporting reads
6454 UHR pooled cells
1730 Brain
3262 Blood
28127 Neuroblastoma
173 Other
(also 5868 Primates bodymap)
145 bp exon
4533 bp [gt-ag] intron
39 GenBank accessions
52518 RNA-seq supporting reads
8572 UHR pooled cells
2236 Brain
3200 Blood
38305 Neuroblastoma
205 Other
(also 5169 Primates bodymap)
250 bp exon
1490 bp [gt-ag] intron
29 GenBank accessions
50309 RNA-seq supporting reads
8170 UHR pooled cells
2230 Brain
3938 Blood
35793 Neuroblastoma
178 Other
(also 6652 Primates bodymap)
219 bp exon
1644 bp [gt-ag] intron
25 GenBank accessions
34038 RNA-seq supporting reads
5295 UHR pooled cells
1633 Brain
3332 Blood
23609 Neuroblastoma
169 Other
(also 3369 Primates bodymap)
105 bp exon
4840 bp [gt-ag] intron
29 GenBank accessions
46916 RNA-seq supporting reads
7996 UHR pooled cells
2345 Brain
3251 Blood
33186 Neuroblastoma
138 Other
(also 4409 Primates bodymap)
63 bp exon
5664 bp [gt-ag] intron
31 GenBank accessions
52102 RNA-seq supporting reads
9037 UHR pooled cells
2609 Brain
3124 Blood
37159 Neuroblastoma
173 Other
(also 5638 Primates bodymap)
120 bp exon
7205 bp [gt-ag] intron
29 GenBank accessions
39608 RNA-seq supporting reads
6764 UHR pooled cells
2015 Brain
1981 Blood
28713 Neuroblastoma
135 Other
(also 4416 Primates bodymap)
100 bp exon
17715 bp [gt-ag] intron
36 GenBank accessions
30250 RNA-seq supporting reads
4927 UHR pooled cells
1521 Brain
1426 Blood
22244 Neuroblastoma
132 Other
(also 2493 Primates bodymap)
107 bp exon
13629 bp [gt-ag] intron
54 GenBank accessions
51702 RNA-seq supporting reads
8471 UHR pooled cells
2679 Brain
1940 Blood
38461 Neuroblastoma
151 Other
(also 4003 Primates bodymap)
77 bp exon
3216 bp [gt-ag] intron
66 GenBank accessions
54881 RNA-seq supporting reads
9164 UHR pooled cells
2894 Brain
990 Blood
41673 Neuroblastoma
160 Other
(also 3510 Primates bodymap)
89 bp exon
1904 bp [gt-ag] intron
72 GenBank accessions
44097 RNA-seq supporting reads
6843 UHR pooled cells
2217 Brain
2237 Blood
32690 Neuroblastoma
110 Other
(also 3487 Primates bodymap)
71 bp exon
3555 bp [gt-ag] intron
81 GenBank accessions
44928 RNA-seq supporting reads
6990 UHR pooled cells
2336 Brain
2534 Blood
32959 Neuroblastoma
109 Other
(also 3725 Primates bodymap)
302 bp exon
4 accessions, some from eye (seen once)
eye, retinoblastoma (once)
retinoblastoma (once)
small intestine (once)
Validated 3' end, 1 accession
302 bp exon
71 bp exon
12140 bp [gt-ag] intron
62 GenBank accessions
13507 RNA-seq supporting reads
747 UHR pooled cells
477 Brain
212 Blood
12030 Neuroblastoma
41 Other
(also 303 Primates bodymap)
53 bp exon
84 bp [gt-ag] intron
148 GenBank accessions
18525 RNA-seq supporting reads
2135 UHR pooled cells
686 Brain
2113 Blood
13544 Neuroblastoma
47 Other
(also 6281 Primates bodymap)
100 bp exon
5836 bp [gt-ag] intron
109 GenBank accessions
15178 RNA-seq supporting reads
3273 UHR pooled cells
447 Brain
1500 Blood
9912 Neuroblastoma
46 Other
(also 5450 Primates bodymap)
58 bp exon
58 bp exon
3536 bp [gt-ag] intron
116 GenBank accessions
29456 RNA-seq supporting reads
4465 UHR pooled cells
1200 Brain
3361 Blood
20318 Neuroblastoma
112 Other
(also 5367 Primates bodymap)
273 bp exon
2824 bp [gt-ag] intron
69 GenBank accessions
41049 RNA-seq supporting reads
5931 UHR pooled cells
1712 Brain
2944 Blood
30281 Neuroblastoma
181 Other
(also 6780 Primates bodymap)
133 bp exon
221 bp [gt-ag] intron
48 GenBank accessions
37460 RNA-seq supporting reads
5676 UHR pooled cells
1332 Brain
4143 Blood
26153 Neuroblastoma
156 Other
(also 5199 Primates bodymap)
77 bp exon
878 bp [gt-ag] intron
45 GenBank accessions
28181 RNA-seq supporting reads
4359 UHR pooled cells
975 Brain
2946 Blood
19778 Neuroblastoma
123 Other
(also 2540 Primates bodymap)
135 bp exon
3059 bp [gt-ag] intron
34 GenBank accessions
31037 RNA-seq supporting reads
4467 UHR pooled cells
1157 Brain
3181 Blood
22121 Neuroblastoma
111 Other
(also 3724 Primates bodymap)
102 bp exon
3943 bp [gt-ag] intron
39 GenBank accessions
40357 RNA-seq supporting reads
6138 UHR pooled cells
1701 Brain
3739 Blood
28585 Neuroblastoma
194 Other
(also 6626 Primates bodymap)
118 bp exon
2089 bp [gt-ag] intron
40 GenBank accessions
39746 RNA-seq supporting reads
6454 UHR pooled cells
1730 Brain
3262 Blood
28127 Neuroblastoma
173 Other
(also 5868 Primates bodymap)
145 bp exon
4533 bp [gt-ag] intron
39 GenBank accessions
52518 RNA-seq supporting reads
8572 UHR pooled cells
2236 Brain
3200 Blood
38305 Neuroblastoma
205 Other
(also 5169 Primates bodymap)
250 bp exon
1490 bp [gt-ag] intron
29 GenBank accessions
50309 RNA-seq supporting reads
8170 UHR pooled cells
2230 Brain
3938 Blood
35793 Neuroblastoma
178 Other
(also 6652 Primates bodymap)
219 bp exon
1644 bp [gt-ag] intron
25 GenBank accessions
34038 RNA-seq supporting reads
5295 UHR pooled cells
1633 Brain
3332 Blood
23609 Neuroblastoma
169 Other
(also 3369 Primates bodymap)
105 bp exon
4840 bp [gt-ag] intron
29 GenBank accessions
46916 RNA-seq supporting reads
7996 UHR pooled cells
2345 Brain
3251 Blood
33186 Neuroblastoma
138 Other
(also 4409 Primates bodymap)
63 bp exon
5664 bp [gt-ag] intron
31 GenBank accessions
52102 RNA-seq supporting reads
9037 UHR pooled cells
2609 Brain
3124 Blood
37159 Neuroblastoma
173 Other
(also 5638 Primates bodymap)
120 bp exon
25020 bp [gt-ag] intron
1 GenBank accession
341 RNA-seq supporting reads
50 UHR pooled cells
34 Brain
3 Blood
250 Neuroblastoma
4 Other
(also 7 Primates bodymap)
107 bp exon
107 bp exon
13629 bp [gt-ag] intron
54 GenBank accessions
51702 RNA-seq supporting reads
8471 UHR pooled cells
2679 Brain
1940 Blood
38461 Neuroblastoma
151 Other
(also 4003 Primates bodymap)
77 bp exon
3216 bp [gt-ag] intron
66 GenBank accessions
54881 RNA-seq supporting reads
9164 UHR pooled cells
2894 Brain
990 Blood
41673 Neuroblastoma
160 Other
(also 3510 Primates bodymap)
89 bp exon
228 bp [gt-ag] fuzzy intron
1 GenBank accession
491 RNA-seq supporting reads
157 UHR pooled cells
28 Brain
44 Blood
261 Neuroblastoma
1 Other
(also 48 Primates bodymap)
78 bp exon
1598 bp [gt-ag] intron
1 GenBank accession
266 RNA-seq supporting reads
74 UHR pooled cells
8 Brain
31 Blood
153 Neuroblastoma
(also 2 Primates bodymap)
71 bp exon
3555 bp [gt-ag] intron
81 GenBank accessions
44928 RNA-seq supporting reads
6990 UHR pooled cells
2336 Brain
2534 Blood
32959 Neuroblastoma
109 Other
(also 3725 Primates bodymap)
2 accessions, some from b-cell
chronic lymphotic leukemia (seen once)
307 bp exon
69 bp exon
12145 bp [gt-ag] intron
1 GenBank accession
477 RNA-seq supporting reads
34 UHR pooled cells
17 Brain
9 Blood
416 Neuroblastoma
1 Other
(also 15 Primates bodymap)
48 bp exon
84 bp [gt-ag] intron
148 GenBank accessions
18525 RNA-seq supporting reads
2135 UHR pooled cells
686 Brain
2113 Blood
13544 Neuroblastoma
47 Other
(also 6281 Primates bodymap)
100 bp exon
5836 bp [gt-ag] intron
109 GenBank accessions
15178 RNA-seq supporting reads
3273 UHR pooled cells
447 Brain
1500 Blood
9912 Neuroblastoma
46 Other
(also 5450 Primates bodymap)
58 bp exon
58 bp exon
3536 bp [gt-ag] intron
116 GenBank accessions
29456 RNA-seq supporting reads
4465 UHR pooled cells
1200 Brain
3361 Blood
20318 Neuroblastoma
112 Other
(also 5367 Primates bodymap)
273 bp exon
2824 bp [gt-ag] intron
69 GenBank accessions
41049 RNA-seq supporting reads
5931 UHR pooled cells
1712 Brain
2944 Blood
30281 Neuroblastoma
181 Other
(also 6780 Primates bodymap)
133 bp exon
221 bp [gt-ag] intron
48 GenBank accessions
37460 RNA-seq supporting reads
5676 UHR pooled cells
1332 Brain
4143 Blood
26153 Neuroblastoma
156 Other
(also 5199 Primates bodymap)
77 bp exon
878 bp [gt-ag] intron
45 GenBank accessions
28181 RNA-seq supporting reads
4359 UHR pooled cells
975 Brain
2946 Blood
19778 Neuroblastoma
123 Other
(also 2540 Primates bodymap)
135 bp exon
3059 bp [gt-ag] intron
34 GenBank accessions
31037 RNA-seq supporting reads
4467 UHR pooled cells
1157 Brain
3181 Blood
22121 Neuroblastoma
111 Other
(also 3724 Primates bodymap)
102 bp exon
3943 bp [gt-ag] intron
39 GenBank accessions
40357 RNA-seq supporting reads
6138 UHR pooled cells
1701 Brain
3739 Blood
28585 Neuroblastoma
194 Other
(also 6626 Primates bodymap)
118 bp exon
2089 bp [gt-ag] intron
40 GenBank accessions
39746 RNA-seq supporting reads
6454 UHR pooled cells
1730 Brain
3262 Blood
28127 Neuroblastoma
173 Other
(also 5868 Primates bodymap)
488 bp exon
3 accessions, some from colon ins (seen once)
epithelioid carcinoma (once)
pancreas (once)
capped 5' end, 1 accession
488 bp exon
105 bp exon
105 bp exon
3606 bp [gt-ag] intron
85 GenBank accessions
13634 RNA-seq supporting reads
3341 UHR pooled cells
535 Brain
1675 Blood
8011 Neuroblastoma
72 Other
(also 7081 Primates bodymap)
74 bp exon
8460 bp [gt-ag] intron
85 GenBank accessions
12366 RNA-seq supporting reads
3208 UHR pooled cells
465 Brain
1441 Blood
7190 Neuroblastoma
62 Other
(also 6317 Primates bodymap)
53 bp exon
84 bp [gt-ag] intron
148 GenBank accessions
18525 RNA-seq supporting reads
2135 UHR pooled cells
686 Brain
2113 Blood
13544 Neuroblastoma
47 Other
(also 6281 Primates bodymap)
100 bp exon
4542 bp [gt-ag] intron
10 GenBank accessions
3536 RNA-seq supporting reads
240 UHR pooled cells
176 Brain
170 Blood
2936 Neuroblastoma
14 Other
(also 14 Primates bodymap)
102 bp exon
1192 bp [gt-ag] intron
8 GenBank accessions
2522 RNA-seq supporting reads
243 UHR pooled cells
90 Brain
47 Blood
2136 Neuroblastoma
6 Other
(also 3 Primates bodymap)
58 bp exon
3536 bp [gt-ag] intron
116 GenBank accessions
29456 RNA-seq supporting reads
4465 UHR pooled cells
1200 Brain
3361 Blood
20318 Neuroblastoma
112 Other
(also 5367 Primates bodymap)
273 bp exon
2824 bp [gt-ag] intron
69 GenBank accessions
41049 RNA-seq supporting reads
5931 UHR pooled cells
1712 Brain
2944 Blood
30281 Neuroblastoma
181 Other
(also 6780 Primates bodymap)
133 bp exon
1176 bp [gt-ag] intron
4 GenBank accessions
793 RNA-seq supporting reads
49 UHR pooled cells
129 Brain
24 Blood
583 Neuroblastoma
8 Other
(also 214 Primates bodymap)
135 bp exon
3059 bp [gt-ag] intron
34 GenBank accessions
31037 RNA-seq supporting reads
4467 UHR pooled cells
1157 Brain
3181 Blood
22121 Neuroblastoma
111 Other
(also 3724 Primates bodymap)
102 bp exon
102 bp exon
3943 bp [gt-ag] intron
39 GenBank accessions
40357 RNA-seq supporting reads
6138 UHR pooled cells
1701 Brain
3739 Blood
28585 Neuroblastoma
194 Other
(also 6626 Primates bodymap)
118 bp exon
2089 bp [gt-ag] intron
40 GenBank accessions
39746 RNA-seq supporting reads
6454 UHR pooled cells
1730 Brain
3262 Blood
28127 Neuroblastoma
173 Other
(also 5868 Primates bodymap)
145 bp exon
4533 bp [gt-ag] intron
39 GenBank accessions
52518 RNA-seq supporting reads
8572 UHR pooled cells
2236 Brain
3200 Blood
38305 Neuroblastoma
205 Other
(also 5169 Primates bodymap)
4 accessions, some from brain (seen once)
embryonic stem cell, retinoic acid andmitogen-treated hes cell line H7 (once)
placenta cot 25-normalized (once)
thymus (once)
capped 5' end, 1 accession
549 bp exon
184 bp exon
184 bp exon
30 bp uORF
1598 bp [gt-ag] intron
1 GenBank accession
331 RNA-seq supporting reads
48 UHR pooled cells
3 Brain
17 Blood
262 Neuroblastoma
1 Other
30 bp uORF
100 bp exon
100 bp exon
100 bp exon
17715 bp [gt-ag] intron
36 GenBank accessions
30250 RNA-seq supporting reads
4927 UHR pooled cells
1521 Brain
1426 Blood
22244 Neuroblastoma
132 Other
(also 2493 Primates bodymap)
107 bp exon
107 bp exon
13629 bp [gt-ag] intron
54 GenBank accessions
51702 RNA-seq supporting reads
8471 UHR pooled cells
2679 Brain
1940 Blood
38461 Neuroblastoma
151 Other
(also 4003 Primates bodymap)
77 bp exon
77 bp exon
3216 bp [gt-ag] intron
66 GenBank accessions
54881 RNA-seq supporting reads
9164 UHR pooled cells
2894 Brain
990 Blood
41673 Neuroblastoma
160 Other
(also 3510 Primates bodymap)
89 bp exon
89 bp exon
1904 bp [gt-ag] intron
72 GenBank accessions
44097 RNA-seq supporting reads
6843 UHR pooled cells
2217 Brain
2237 Blood
32690 Neuroblastoma
110 Other
(also 3487 Primates bodymap)
30 bp exon
30 bp exon
1 accession from ascites from stomach
30 bp exon
67 bp exon
67 bp exon
3606 bp [gt-ag] intron
85 GenBank accessions
13634 RNA-seq supporting reads
3341 UHR pooled cells
535 Brain
1675 Blood
8011 Neuroblastoma
72 Other
(also 7081 Primates bodymap)
74 bp exon
8460 bp [gt-ag] intron
85 GenBank accessions
12366 RNA-seq supporting reads
3208 UHR pooled cells
465 Brain
1441 Blood
7190 Neuroblastoma
62 Other
(also 6317 Primates bodymap)
53 bp exon
84 bp [gt-ag] intron
148 GenBank accessions
18525 RNA-seq supporting reads
2135 UHR pooled cells
686 Brain
2113 Blood
13544 Neuroblastoma
47 Other
(also 6281 Primates bodymap)
100 bp exon
5836 bp [gt-ag] intron
109 GenBank accessions
15178 RNA-seq supporting reads
3273 UHR pooled cells
447 Brain
1500 Blood
9912 Neuroblastoma
46 Other
(also 5450 Primates bodymap)
58 bp exon
3536 bp [gt-ag] intron
116 GenBank accessions
29456 RNA-seq supporting reads
4465 UHR pooled cells
1200 Brain
3361 Blood
20318 Neuroblastoma
112 Other
(also 5367 Primates bodymap)
273 bp exon
2824 bp [gt-ag] intron
69 GenBank accessions
41049 RNA-seq supporting reads
5931 UHR pooled cells
1712 Brain
2944 Blood
30281 Neuroblastoma
181 Other
(also 6780 Primates bodymap)
133 bp exon
1176 bp [gt-ag] intron
4 GenBank accessions
793 RNA-seq supporting reads
49 UHR pooled cells
129 Brain
24 Blood
583 Neuroblastoma
8 Other
(also 214 Primates bodymap)
121 bp exon
2 accessions, some from placenta cot 25-normalized (seen once)
trachea (once)
121 bp exon
67 bp exon
12140 bp [gt-ag] intron
62 GenBank accessions
13507 RNA-seq supporting reads
747 UHR pooled cells
477 Brain
212 Blood
12030 Neuroblastoma
41 Other
(also 303 Primates bodymap)
53 bp exon
84 bp [gt-ag] intron
148 GenBank accessions
18525 RNA-seq supporting reads
2135 UHR pooled cells
686 Brain
2113 Blood
13544 Neuroblastoma
47 Other
(also 6281 Primates bodymap)
100 bp exon
4542 bp [gt-ag] intron
10 GenBank accessions
3536 RNA-seq supporting reads
240 UHR pooled cells
176 Brain
170 Blood
2936 Neuroblastoma
14 Other
(also 14 Primates bodymap)
425 bp exon
Sequence gap 37268 bp
120 bp exon
7205 bp [gt-ag] intron
29 GenBank accessions
39608 RNA-seq supporting reads
6764 UHR pooled cells
2015 Brain
1981 Blood
28713 Neuroblastoma
135 Other
(also 4416 Primates bodymap)
100 bp exon
100 bp exon
17715 bp [gt-ag] intron
36 GenBank accessions
30250 RNA-seq supporting reads
4927 UHR pooled cells
1521 Brain
1426 Blood
22244 Neuroblastoma
132 Other
(also 2493 Primates bodymap)
107 bp exon
13629 bp [gt-ag] intron
54 GenBank accessions
51702 RNA-seq supporting reads
8471 UHR pooled cells
2679 Brain
1940 Blood
38461 Neuroblastoma
151 Other
(also 4003 Primates bodymap)
77 bp exon
3216 bp [gt-ag] intron
66 GenBank accessions
54881 RNA-seq supporting reads
9164 UHR pooled cells
2894 Brain
990 Blood
41673 Neuroblastoma
160 Other
(also 3510 Primates bodymap)
89 bp exon
1904 bp [gt-ag] intron
72 GenBank accessions
44097 RNA-seq supporting reads
6843 UHR pooled cells
2217 Brain
2237 Blood
32690 Neuroblastoma
110 Other
(also 3487 Primates bodymap)
71 bp exon
3555 bp [gt-ag] intron
81 GenBank accessions
44928 RNA-seq supporting reads
6990 UHR pooled cells
2336 Brain
2534 Blood
32959 Neuroblastoma
109 Other
(also 3725 Primates bodymap)
318 bp exon
2 accessions, some from brain (seen once)
fetal brain (once), uterus (once)
capped 5' end, 1 accession
318 bp exon
16 bp exon
16 bp exon
838 bp [gc-ag] intron
1 GenBank accession
55 RNA-seq supporting reads
4 Brain
8 Blood
43 Neuroblastoma
58 bp exon
3536 bp [gt-ag] intron
116 GenBank accessions
29456 RNA-seq supporting reads
4465 UHR pooled cells
1200 Brain
3361 Blood
20318 Neuroblastoma
112 Other
(also 5367 Primates bodymap)
273 bp exon
2824 bp [gt-ag] intron
69 GenBank accessions
41049 RNA-seq supporting reads
5931 UHR pooled cells
1712 Brain
2944 Blood
30281 Neuroblastoma
181 Other
(also 6780 Primates bodymap)
133 bp exon
221 bp [gt-ag] intron
48 GenBank accessions
37460 RNA-seq supporting reads
5676 UHR pooled cells
1332 Brain
4143 Blood
26153 Neuroblastoma
156 Other
(also 5199 Primates bodymap)
77 bp exon
878 bp [gt-ag] intron
45 GenBank accessions
28181 RNA-seq supporting reads
4359 UHR pooled cells
975 Brain
2946 Blood
19778 Neuroblastoma
123 Other
(also 2540 Primates bodymap)
135 bp exon
3059 bp [gt-ag] intron
34 GenBank accessions
31037 RNA-seq supporting reads
4467 UHR pooled cells
1157 Brain
3181 Blood
22121 Neuroblastoma
111 Other
(also 3724 Primates bodymap)
35 bp exon
1 accession from embryonic stem cells
cell lines H1, H7, andh9
35 bp exon
58 bp exon
58 bp exon
3606 bp [gt-ag] intron
85 GenBank accessions
13634 RNA-seq supporting reads
3341 UHR pooled cells
535 Brain
1675 Blood
8011 Neuroblastoma
72 Other
(also 7081 Primates bodymap)
74 bp exon
8460 bp [gt-ag] intron
85 GenBank accessions
12366 RNA-seq supporting reads
3208 UHR pooled cells
465 Brain
1441 Blood
7190 Neuroblastoma
62 Other
(also 6317 Primates bodymap)
53 bp exon
84 bp [gt-ag] intron
148 GenBank accessions
18525 RNA-seq supporting reads
2135 UHR pooled cells
686 Brain
2113 Blood
13544 Neuroblastoma
47 Other
(also 6281 Primates bodymap)
100 bp exon
4538 bp [gt-ag] intron
13 GenBank accessions
2737 RNA-seq supporting reads
105 UHR pooled cells
150 Brain
145 Blood
2329 Neuroblastoma
8 Other
(also 13 Primates bodymap)
106 bp exon
1192 bp [gt-ag] intron
8 GenBank accessions
2522 RNA-seq supporting reads
243 UHR pooled cells
90 Brain
47 Blood
2136 Neuroblastoma
6 Other
(also 3 Primates bodymap)
58 bp exon
58 bp exon
3536 bp [gt-ag] intron
116 GenBank accessions
29456 RNA-seq supporting reads
4465 UHR pooled cells
1200 Brain
3361 Blood
20318 Neuroblastoma
112 Other
(also 5367 Primates bodymap)
273 bp exon
2824 bp [gt-ag] intron
69 GenBank accessions
41049 RNA-seq supporting reads
5931 UHR pooled cells
1712 Brain
2944 Blood
30281 Neuroblastoma
181 Other
(also 6780 Primates bodymap)
133 bp exon
221 bp [gt-ag] intron
48 GenBank accessions
37460 RNA-seq supporting reads
5676 UHR pooled cells
1332 Brain
4143 Blood
26153 Neuroblastoma
156 Other
(also 5199 Primates bodymap)
1 accession from leiomyosarcoma from uterus
77 bp exon
69 bp exon
69 bp exon
21807 bp [gt-ag] intron
1 GenBank accession
29 RNA-seq supporting reads
2 UHR pooled cells
27 Neuroblastoma
273 bp exon
2824 bp [gt-ag] intron
69 GenBank accessions
41049 RNA-seq supporting reads
5931 UHR pooled cells
1712 Brain
2944 Blood
30281 Neuroblastoma
181 Other
(also 6780 Primates bodymap)
133 bp exon
221 bp [gt-ag] intron
48 GenBank accessions
37460 RNA-seq supporting reads
5676 UHR pooled cells
1332 Brain
4143 Blood
26153 Neuroblastoma
156 Other
(also 5199 Primates bodymap)
77 bp exon
878 bp [gt-ag] intron
45 GenBank accessions
28181 RNA-seq supporting reads
4359 UHR pooled cells
975 Brain
2946 Blood
19778 Neuroblastoma
123 Other
(also 2540 Primates bodymap)
1 accession from esophageal
tumor tissue
15 bp exon
116 bp exon
116 bp exon
3606 bp [gt-ag] intron
85 GenBank accessions
13634 RNA-seq supporting reads
3341 UHR pooled cells
535 Brain
1675 Blood
8011 Neuroblastoma
72 Other
(also 7081 Primates bodymap)
74 bp exon
8460 bp [gt-ag] intron
85 GenBank accessions
12366 RNA-seq supporting reads
3208 UHR pooled cells
465 Brain
1441 Blood
7190 Neuroblastoma
62 Other
(also 6317 Primates bodymap)
53 bp exon
84 bp [gt-ag] intron
148 GenBank accessions
18525 RNA-seq supporting reads
2135 UHR pooled cells
686 Brain
2113 Blood
13544 Neuroblastoma
47 Other
(also 6281 Primates bodymap)
100 bp exon
5836 bp [gt-ag] intron
109 GenBank accessions
15178 RNA-seq supporting reads
3273 UHR pooled cells
447 Brain
1500 Blood
9912 Neuroblastoma
46 Other
(also 5450 Primates bodymap)
58 bp exon
3540 bp [gt-ag] intron
2 GenBank accessions
390 RNA-seq supporting reads
35 UHR pooled cells
25 Brain
2 Blood
328 Neuroblastoma
(also 6 Primates bodymap)
269 bp exon
269 bp exon
2824 bp [gt-ag] intron
69 GenBank accessions
41049 RNA-seq supporting reads
5931 UHR pooled cells
1712 Brain
2944 Blood
30281 Neuroblastoma
181 Other
(also 6780 Primates bodymap)
133 bp exon
221 bp [gt-ag] intron
48 GenBank accessions
37460 RNA-seq supporting reads
5676 UHR pooled cells
1332 Brain
4143 Blood
26153 Neuroblastoma
156 Other
(also 5199 Primates bodymap)
77 bp exon
878 bp [gt-ag] intron
45 GenBank accessions
28181 RNA-seq supporting reads
4359 UHR pooled cells
975 Brain
2946 Blood
19778 Neuroblastoma
123 Other
(also 2540 Primates bodymap)
135 bp exon
1951 bp [gt-ag] intron
3 GenBank accessions
3719 RNA-seq supporting reads
470 UHR pooled cells
246 Brain
278 Blood
2704 Neuroblastoma
21 Other
(also 17 Primates bodymap)
3 accessions, some from brain (seen once)
hepatoblastoma (once)
substantia nigra (once)
81 bp exon
740 bp exon
740 bp exon
2 accessions, some from colon (seen once)
head neck (once)
740 bp exon
158 bp exon
158 bp exon
16685 bp [gt-ag] intron
2 GenBank accessions
1696 RNA-seq supporting reads
355 UHR pooled cells
81 Brain
72 Blood
1180 Neuroblastoma
8 Other
107 bp exon
13629 bp [gt-ag] intron
54 GenBank accessions
51702 RNA-seq supporting reads
8471 UHR pooled cells
2679 Brain
1940 Blood
38461 Neuroblastoma
151 Other
(also 4003 Primates bodymap)
77 bp exon
3216 bp [gt-ag] intron
66 GenBank accessions
54881 RNA-seq supporting reads
9164 UHR pooled cells
2894 Brain
990 Blood
41673 Neuroblastoma
160 Other
(also 3510 Primates bodymap)
89 bp exon
1904 bp [gt-ag] intron
72 GenBank accessions
44097 RNA-seq supporting reads
6843 UHR pooled cells
2217 Brain
2237 Blood
32690 Neuroblastoma
110 Other
(also 3487 Primates bodymap)
71 bp exon
3555 bp [gt-ag] intron
81 GenBank accessions
44928 RNA-seq supporting reads
6990 UHR pooled cells
2336 Brain
2534 Blood
32959 Neuroblastoma
109 Other
(also 3725 Primates bodymap)
323 bp exon
2 accessions, some from eye (seen once)
retina foveal and macular (once)
Validated 3' end, 1 accession
323 bp exon
58 bp exon
58 bp exon
93 bp uORF
12140 bp [gt-ag] intron
62 GenBank accessions
13507 RNA-seq supporting reads
747 UHR pooled cells
477 Brain
212 Blood
12030 Neuroblastoma
41 Other
(also 303 Primates bodymap)
93 bp uORF
53 bp exon
53 bp exon
84 bp [gt-ag] intron
148 GenBank accessions
18525 RNA-seq supporting reads
2135 UHR pooled cells
686 Brain
2113 Blood
13544 Neuroblastoma
47 Other
(also 6281 Primates bodymap)
100 bp exon
100 bp exon
4542 bp [gt-ag] intron
10 GenBank accessions
3536 RNA-seq supporting reads
240 UHR pooled cells
176 Brain
170 Blood
2936 Neuroblastoma
14 Other
(also 14 Primates bodymap)
118 bp exon
118 bp exon
118 bp exon
4816 bp [gt-ag] intron
1 GenBank accession
118 RNA-seq supporting reads
13 UHR pooled cells
6 Brain
1 Blood
98 Neuroblastoma
227 bp exon
227 bp exon
2824 bp [gt-ag] intron
69 GenBank accessions
41049 RNA-seq supporting reads
5931 UHR pooled cells
1712 Brain
2944 Blood
30281 Neuroblastoma
181 Other
(also 6780 Primates bodymap)
133 bp exon
133 bp exon
221 bp [gt-ag] intron
48 GenBank accessions
37460 RNA-seq supporting reads
5676 UHR pooled cells
1332 Brain
4143 Blood
26153 Neuroblastoma
156 Other
(also 5199 Primates bodymap)
77 bp exon
1 accession from eye from retinoblastoma
77 bp exon
105 bp exon
105 bp exon
93 bp uORF
12140 bp [gt-ag] intron
62 GenBank accessions
13507 RNA-seq supporting reads
747 UHR pooled cells
477 Brain
212 Blood
12030 Neuroblastoma
41 Other
(also 303 Primates bodymap)
93 bp uORF
53 bp exon
53 bp exon
84 bp [gt-ag] intron
148 GenBank accessions
18525 RNA-seq supporting reads
2135 UHR pooled cells
686 Brain
2113 Blood
13544 Neuroblastoma
47 Other
(also 6281 Primates bodymap)
100 bp exon
100 bp exon
100 bp exon
4538 bp [gt-ag] intron
13 GenBank accessions
2737 RNA-seq supporting reads
105 UHR pooled cells
150 Brain
145 Blood
2329 Neuroblastoma
8 Other
(also 13 Primates bodymap)
106 bp exon
106 bp exon
1192 bp [gt-ag] intron
8 GenBank accessions
2522 RNA-seq supporting reads
243 UHR pooled cells
90 Brain
47 Blood
2136 Neuroblastoma
6 Other
(also 3 Primates bodymap)
58 bp exon
58 bp exon
3536 bp [gt-ag] intron
116 GenBank accessions
29456 RNA-seq supporting reads
4465 UHR pooled cells
1200 Brain
3361 Blood
20318 Neuroblastoma
112 Other
(also 5367 Primates bodymap)
271 bp exon
271 bp exon
5 accessions, some from brain (seen 3 times)
thalamus (once)
capped 5' end, 4 accessions
271 bp exon
172 bp exon
1 accession from nervous normal
172 bp exon
148 bp exon
148 bp exon
1 accession from colon
148 bp exon
142 bp exon
142 bp exon
81 bp uORF
142 bp exon
3216 bp [gt-ag] intron
66 GenBank accessions
54881 RNA-seq supporting reads
9164 UHR pooled cells
2894 Brain
990 Blood
41673 Neuroblastoma
160 Other
(also 3510 Primates bodymap)
89 bp exon
89 bp exon
89 bp exon
1904 bp [gt-ag] intron
72 GenBank accessions
44097 RNA-seq supporting reads
6843 UHR pooled cells
2217 Brain
2237 Blood
32690 Neuroblastoma
110 Other
(also 3487 Primates bodymap)
71 bp exon
71 bp exon
3555 bp [gt-ag] intron
81 GenBank accessions
44928 RNA-seq supporting reads
6990 UHR pooled cells
2336 Brain
2534 Blood
32959 Neuroblastoma
109 Other
(also 3725 Primates bodymap)
321 bp exon
321 bp exon
1 accession from bone from subchondral bone
Validated 3' end, 1 accession
321 bp exon
101 bp exon
101 bp exon
3606 bp [gt-ag] intron
85 GenBank accessions
13634 RNA-seq supporting reads
3341 UHR pooled cells
535 Brain
1675 Blood
8011 Neuroblastoma
72 Other
(also 7081 Primates bodymap)
74 bp exon
8460 bp [gt-ag] intron
85 GenBank accessions
12366 RNA-seq supporting reads
3208 UHR pooled cells
465 Brain
1441 Blood
7190 Neuroblastoma
62 Other
(also 6317 Primates bodymap)
53 bp exon
84 bp [gt-ag] intron
148 GenBank accessions
18525 RNA-seq supporting reads
2135 UHR pooled cells
686 Brain
2113 Blood
13544 Neuroblastoma
47 Other
(also 6281 Primates bodymap)
100 bp exon
4538 bp [gt-ag] intron
13 GenBank accessions
2737 RNA-seq supporting reads
105 UHR pooled cells
150 Brain
145 Blood
2329 Neuroblastoma
8 Other
(also 13 Primates bodymap)
122 bp exon
1176 bp [gt-ag] intron
5 GenBank accessions
1038 RNA-seq supporting reads
35 UHR pooled cells
45 Brain
17 Blood
940 Neuroblastoma
1 Other
58 bp exon
3536 bp [gt-ag] intron
116 GenBank accessions
29456 RNA-seq supporting reads
4465 UHR pooled cells
1200 Brain
3361 Blood
20318 Neuroblastoma
112 Other
(also 5367 Primates bodymap)
20 bp exon
1 accession from thymus
capped 5' end, 1 accession
20 bp exon
89 bp exon
89 bp exon
1018 bp [gt-ag] intron
1 GenBank accession
1596 RNA-seq supporting reads
178 UHR pooled cells
56 Brain
35 Blood
1324 Neuroblastoma
3 Other
(also 1 Primates bodymap)
94 bp exon
94 bp exon
792 bp [gt-ag] intron
2 GenBank accessions
2288 RNA-seq supporting reads
222 UHR pooled cells
109 Brain
29 Blood
1923 Neuroblastoma
5 Other
(also 3 Primates bodymap)
71 bp exon
3555 bp [gt-ag] intron
81 GenBank accessions
44928 RNA-seq supporting reads
6990 UHR pooled cells
2336 Brain
2534 Blood
32959 Neuroblastoma
109 Other
(also 3725 Primates bodymap)
2 accessions
Validated 3' end, 1 accession
302 bp exon
431 bp exon
431 bp exon
1 accession from hypothalamus
431 bp exon
301 bp exon
301 bp exon
2824 bp [gt-ag] intron
69 GenBank accessions
41049 RNA-seq supporting reads
5931 UHR pooled cells
1712 Brain
2944 Blood
30281 Neuroblastoma
181 Other
(also 6780 Primates bodymap)
133 bp exon
221 bp [gt-ag] intron
48 GenBank accessions
37460 RNA-seq supporting reads
5676 UHR pooled cells
1332 Brain
4143 Blood
26153 Neuroblastoma
156 Other
(also 5199 Primates bodymap)
1 accession
26 bp exon
69 bp exon
69 bp exon
3606 bp [gt-ag] intron
85 GenBank accessions
13634 RNA-seq supporting reads
3341 UHR pooled cells
535 Brain
1675 Blood
8011 Neuroblastoma
72 Other
(also 7081 Primates bodymap)
74 bp exon
8460 bp [gt-ag] intron
85 GenBank accessions
12366 RNA-seq supporting reads
3208 UHR pooled cells
465 Brain
1441 Blood
7190 Neuroblastoma
62 Other
(also 6317 Primates bodymap)
53 bp exon
84 bp [gt-ag] intron
148 GenBank accessions
18525 RNA-seq supporting reads
2135 UHR pooled cells
686 Brain
2113 Blood
13544 Neuroblastoma
47 Other
(also 6281 Primates bodymap)
100 bp exon
4538 bp [gt-ag] intron
13 GenBank accessions
2737 RNA-seq supporting reads
105 UHR pooled cells
150 Brain
145 Blood
2329 Neuroblastoma
8 Other
(also 13 Primates bodymap)
616 bp exon
2 accessions, some from cerebellum (seen 2 times)
capped 5' end, 1 accession
616 bp exon
101 bp exon
101 bp exon
3606 bp [gt-ag] intron
85 GenBank accessions
13634 RNA-seq supporting reads
3341 UHR pooled cells
535 Brain
1675 Blood
8011 Neuroblastoma
72 Other
(also 7081 Primates bodymap)
74 bp exon
8460 bp [gt-ag] intron
85 GenBank accessions
12366 RNA-seq supporting reads
3208 UHR pooled cells
465 Brain
1441 Blood
7190 Neuroblastoma
62 Other
(also 6317 Primates bodymap)
53 bp exon
84 bp [gt-ag] intron
148 GenBank accessions
18525 RNA-seq supporting reads
2135 UHR pooled cells
686 Brain
2113 Blood
13544 Neuroblastoma
47 Other
(also 6281 Primates bodymap)
100 bp exon
4562 bp [gt-ag] intron
2 GenBank accessions
97 RNA-seq supporting reads
7 UHR pooled cells
8 Brain
7 Blood
75 Neuroblastoma
(also 11 Primates bodymap)
231 bp exon
1 accession from cerebellum
capped 5' end, 1 accession
231 bp exon
92 bp exon
92 bp exon
3555 bp [gt-ag] intron
81 GenBank accessions
44928 RNA-seq supporting reads
6990 UHR pooled cells
2336 Brain
2534 Blood
32959 Neuroblastoma
109 Other
(also 3725 Primates bodymap)
321 bp exon
2 accessions, some from liver and spleen (seen 2 times)
321 bp exon
79 bp exon
79 bp exon
3606 bp [gt-ag] intron
85 GenBank accessions
13634 RNA-seq supporting reads
3341 UHR pooled cells
535 Brain
1675 Blood
8011 Neuroblastoma
72 Other
(also 7081 Primates bodymap)
74 bp exon
8460 bp [gt-ag] intron
85 GenBank accessions
12366 RNA-seq supporting reads
3208 UHR pooled cells
465 Brain
1441 Blood
7190 Neuroblastoma
62 Other
(also 6317 Primates bodymap)
53 bp exon
84 bp [gt-ag] intron
148 GenBank accessions
18525 RNA-seq supporting reads
2135 UHR pooled cells
686 Brain
2113 Blood
13544 Neuroblastoma
47 Other
(also 6281 Primates bodymap)
100 bp exon
4542 bp [gt-ag] intron
10 GenBank accessions
3536 RNA-seq supporting reads
240 UHR pooled cells
176 Brain
170 Blood
2936 Neuroblastoma
14 Other
(also 14 Primates bodymap)
118 bp exon
118 bp exon
1176 bp [gt-ag] intron
5 GenBank accessions
1038 RNA-seq supporting reads
35 UHR pooled cells
45 Brain
17 Blood
940 Neuroblastoma
1 Other
58 bp exon
3536 bp [gt-ag] intron
116 GenBank accessions
29456 RNA-seq supporting reads
4465 UHR pooled cells
1200 Brain
3361 Blood
20318 Neuroblastoma
112 Other
(also 5367 Primates bodymap)
273 bp exon
2824 bp [gt-ag] intron
69 GenBank accessions
41049 RNA-seq supporting reads
5931 UHR pooled cells
1712 Brain
2944 Blood
30281 Neuroblastoma
181 Other
(also 6780 Primates bodymap)
3 accessions, some from synovial membrane tissue from rheumatioidarthritis (seen once)
thymus (once)
capped 5' end, 2 accessions
104 bp exon
105 bp exon
105 bp exon
3606 bp [gt-ag] intron
85 GenBank accessions
13634 RNA-seq supporting reads
3341 UHR pooled cells
535 Brain
1675 Blood
8011 Neuroblastoma
72 Other
(also 7081 Primates bodymap)
74 bp exon
8460 bp [gt-ag] intron
85 GenBank accessions
12366 RNA-seq supporting reads
3208 UHR pooled cells
465 Brain
1441 Blood
7190 Neuroblastoma
62 Other
(also 6317 Primates bodymap)
53 bp exon
84 bp [gt-ag] intron
148 GenBank accessions
18525 RNA-seq supporting reads
2135 UHR pooled cells
686 Brain
2113 Blood
13544 Neuroblastoma
47 Other
(also 6281 Primates bodymap)
100 bp exon
4542 bp [gt-ag] intron
10 GenBank accessions
3536 RNA-seq supporting reads
240 UHR pooled cells
176 Brain
170 Blood
2936 Neuroblastoma
14 Other
(also 14 Primates bodymap)
280 bp exon
2 accessions, some from cerebellum (seen once)
trachea (once)
capped 5' end, 2 accessions
280 bp exon
274 bp exon
274 bp exon
1 accession from nervous normal
274 bp exon
100 bp exon
17715 bp [gt-ag] intron
36 GenBank accessions
30250 RNA-seq supporting reads
4927 UHR pooled cells
1521 Brain
1426 Blood
22244 Neuroblastoma
132 Other
(also 2493 Primates bodymap)
107 bp exon
13629 bp [gt-ag] intron
54 GenBank accessions
51702 RNA-seq supporting reads
8471 UHR pooled cells
2679 Brain
1940 Blood
38461 Neuroblastoma
151 Other
(also 4003 Primates bodymap)
77 bp exon
5209 bp [gt-ag] intron
2 GenBank accessions
274 RNA-seq supporting reads
19 UHR pooled cells
25 Brain
5 Blood
225 Neuroblastoma
(also 17 Primates bodymap)
71 bp exon
71 bp exon
3555 bp [gt-ag] intron
81 GenBank accessions
44928 RNA-seq supporting reads
6990 UHR pooled cells
2336 Brain
2534 Blood
32959 Neuroblastoma
109 Other
(also 3725 Primates bodymap)
1 accession from human lung epithelial cells from lung
Validated 3' end, 1 accession
302 bp exon
69 bp exon
12140 bp [gt-ag] intron
62 GenBank accessions
13507 RNA-seq supporting reads
747 UHR pooled cells
477 Brain
212 Blood
12030 Neuroblastoma
41 Other
(also 303 Primates bodymap)
53 bp exon
84 bp [gt-ag] intron
148 GenBank accessions
18525 RNA-seq supporting reads
2135 UHR pooled cells
686 Brain
2113 Blood
13544 Neuroblastoma
47 Other
(also 6281 Primates bodymap)
100 bp exon
100 bp exon
4562 bp [gt-ag] intron
2 GenBank accessions
97 RNA-seq supporting reads
7 UHR pooled cells
8 Brain
7 Blood
75 Neuroblastoma
(also 11 Primates bodymap)
82 bp exon
1225 bp [gt-ag] intron
1 GenBank accession
25 bp exon
3536 bp [gt-ag] intron
116 GenBank accessions
29456 RNA-seq supporting reads
4465 UHR pooled cells
1200 Brain
3361 Blood
20318 Neuroblastoma
112 Other
(also 5367 Primates bodymap)
1 accession from brain
capped 5' end, 1 accession
168 bp exon
79 bp exon
79 bp exon
3606 bp [gt-ag] intron
85 GenBank accessions
13634 RNA-seq supporting reads
3341 UHR pooled cells
535 Brain
1675 Blood
8011 Neuroblastoma
72 Other
(also 7081 Primates bodymap)
74 bp exon
8460 bp [gt-ag] intron
85 GenBank accessions
12366 RNA-seq supporting reads
3208 UHR pooled cells
465 Brain
1441 Blood
7190 Neuroblastoma
62 Other
(also 6317 Primates bodymap)
53 bp exon
84 bp [gt-ag] intron
148 GenBank accessions
18525 RNA-seq supporting reads
2135 UHR pooled cells
686 Brain
2113 Blood
13544 Neuroblastoma
47 Other
(also 6281 Primates bodymap)
100 bp exon
9430 bp [gt-ag] intron
14 GenBank accessions
2628 RNA-seq supporting reads
259 UHR pooled cells
133 Brain
218 Blood
2004 Neuroblastoma
14 Other
(also 57 Primates bodymap)
273 bp exon
273 bp exon
2824 bp [gt-ag] intron
69 GenBank accessions
41049 RNA-seq supporting reads
5931 UHR pooled cells
1712 Brain
2944 Blood
30281 Neuroblastoma
181 Other
(also 6780 Primates bodymap)
3 accessions, some from brain (seen once)
capped 5' end, 2 accessions
21 bp exon
325 bp exon
325 bp exon
54 bp uORF
325 bp exon
325 bp exon
3536 bp [gt-ag] intron
116 GenBank accessions
29456 RNA-seq supporting reads
4465 UHR pooled cells
1200 Brain
3361 Blood
20318 Neuroblastoma
112 Other
(also 5367 Primates bodymap)
256 bp exon
256 bp exon
1 accession from stomach mucosa
256 bp exon
79 bp exon
12140 bp [gt-ag] intron
62 GenBank accessions
13507 RNA-seq supporting reads
747 UHR pooled cells
477 Brain
212 Blood
12030 Neuroblastoma
41 Other
(also 303 Primates bodymap)
53 bp exon
84 bp [gt-ag] intron
148 GenBank accessions
18525 RNA-seq supporting reads
2135 UHR pooled cells
686 Brain
2113 Blood
13544 Neuroblastoma
47 Other
(also 6281 Primates bodymap)
100 bp exon
4538 bp [gt-ag] intron
13 GenBank accessions
2737 RNA-seq supporting reads
105 UHR pooled cells
150 Brain
145 Blood
2329 Neuroblastoma
8 Other
(also 13 Primates bodymap)
792 bp exon
792 bp exon
792 bp exon
Sequence gap 62110 bp
42 bp exon
13629 bp [gt-ag] intron
54 GenBank accessions
51702 RNA-seq supporting reads
8471 UHR pooled cells
2679 Brain
1940 Blood
38461 Neuroblastoma
151 Other
(also 4003 Primates bodymap)
77 bp exon
5209 bp [gt-ag] intron
2 GenBank accessions
274 RNA-seq supporting reads
19 UHR pooled cells
25 Brain
5 Blood
225 Neuroblastoma
(also 17 Primates bodymap)
71 bp exon
3555 bp [gt-ag] intron
81 GenBank accessions
44928 RNA-seq supporting reads
6990 UHR pooled cells
2336 Brain
2534 Blood
32959 Neuroblastoma
109 Other
(also 3725 Primates bodymap)
2 accessions, some from brain (seen 2 times)
capped 5' end, 2 accessions
336 bp exon
101 bp exon
12140 bp [gt-ag] intron
62 GenBank accessions
13507 RNA-seq supporting reads
747 UHR pooled cells
477 Brain
212 Blood
12030 Neuroblastoma
41 Other
(also 303 Primates bodymap)
53 bp exon
91 bp [gt-ag] intron
1 GenBank accession
85 RNA-seq supporting reads
2 UHR pooled cells
1 Brain
8 Blood
73 Neuroblastoma
1 Other
(also 13 Primates bodymap)
93 bp exon
93 bp exon
5836 bp [gt-ag] intron
109 GenBank accessions
15178 RNA-seq supporting reads
3273 UHR pooled cells
447 Brain
1500 Blood
9912 Neuroblastoma
46 Other
(also 5450 Primates bodymap)
58 bp exon
3536 bp [gt-ag] intron
116 GenBank accessions
29456 RNA-seq supporting reads
4465 UHR pooled cells
1200 Brain
3361 Blood
20318 Neuroblastoma
112 Other
(also 5367 Primates bodymap)
255 bp exon
1 accession from small intestine
capped 5' end, 1 accession
255 bp exon
89 bp exon
3606 bp [gt-ag] intron
85 GenBank accessions
13634 RNA-seq supporting reads
3341 UHR pooled cells
535 Brain
1675 Blood
8011 Neuroblastoma
72 Other
(also 7081 Primates bodymap)
74 bp exon
8465 bp [gt-ag] intron
1 GenBank accession
243 RNA-seq supporting reads
21 UHR pooled cells
28 Brain
24 Blood
168 Neuroblastoma
2 Other
(also 134 Primates bodymap)
48 bp exon
84 bp [gt-ag] intron
148 GenBank accessions
18525 RNA-seq supporting reads
2135 UHR pooled cells
686 Brain
2113 Blood
13544 Neuroblastoma
47 Other
(also 6281 Primates bodymap)
100 bp exon
100 bp exon
4538 bp [gt-ag] intron
13 GenBank accessions
2737 RNA-seq supporting reads
105 UHR pooled cells
150 Brain
145 Blood
2329 Neuroblastoma
8 Other
(also 13 Primates bodymap)
106 bp exon
1192 bp [gt-ag] intron
8 GenBank accessions
2522 RNA-seq supporting reads
243 UHR pooled cells
90 Brain
47 Blood
2136 Neuroblastoma
6 Other
(also 3 Primates bodymap)
58 bp exon
6633 bp [gt-ag] intron
14 GenBank accessions
783 RNA-seq supporting reads
97 UHR pooled cells
27 Brain
49 Blood
605 Neuroblastoma
5 Other
(also 116 Primates bodymap)
83 bp exon
1 accession from brain
83 bp exon
67 bp exon
12140 bp [gt-ag] intron
62 GenBank accessions
13507 RNA-seq supporting reads
747 UHR pooled cells
477 Brain
212 Blood
12030 Neuroblastoma
41 Other
(also 303 Primates bodymap)
53 bp exon
84 bp [gt-ag] intron
148 GenBank accessions
18525 RNA-seq supporting reads
2135 UHR pooled cells
686 Brain
2113 Blood
13544 Neuroblastoma
47 Other
(also 6281 Primates bodymap)
100 bp exon
4538 bp [gt-ag] intron
13 GenBank accessions
2737 RNA-seq supporting reads
105 UHR pooled cells
150 Brain
145 Blood
2329 Neuroblastoma
8 Other
(also 13 Primates bodymap)
122 bp exon
122 bp exon
1176 bp [gt-ag] intron
5 GenBank accessions
1038 RNA-seq supporting reads
35 UHR pooled cells
45 Brain
17 Blood
940 Neuroblastoma
1 Other
58 bp exon
3536 bp [gt-ag] intron
116 GenBank accessions
29456 RNA-seq supporting reads
4465 UHR pooled cells
1200 Brain
3361 Blood
20318 Neuroblastoma
112 Other
(also 5367 Primates bodymap)
154 bp exon
1 accession from thymus
capped 5' end, 1 accession
154 bp exon
Alternative mRNAs are shown aligned from 5' to 3' on a virtual genome where introns have been shrunk to a minimal length. Exon size is proportional to length, intron height reflects the number of cDNAs supporting each intron, the small numbers show the support of the introns in deep sequencing (with details in mouse-over) . Introns of the same color are identical, of different colors are different. 'Good proteins' are pink, partial or not-good proteins are yellow, uORFs are green. 5' cap or3' poly A flags show completeness of the transcript.
Read more...
Mouse over the ending of each transcript gives tissues from which the supporting cDNAs were extracted. Details on tissue of origin for each intron and exon is available from the
intron and exons table .
Click on any transcript to open the specific mRNA page, to see the exact cDNA clone support and eventual SNPs and to get details on tissues, sequences, mRNA and protein annotations. Proteins supported by a single continuous cDNA sequence lead to underlining the name/ending of the variant. Names not underlined result from cDNA concatenation in the coding region and should be experimentally checked.
Introns are depicted by broken lines; the height of the top of each intron reflects the relative number of clones supporting this intron.
]^[ A pink broken line denotes an intron with standard boundaries (gt-ag or gc-ag) that is exactly supported (i.e. a cDNA sequence exactly matches the genome over 16 bp, 8 on both sides of the intron).
] ^ ] A blue broken line denotes non-standard introns, exactly supported, but with non-standard at-ac or any other boundaries.
]-[ Pink and
] - ] blue straight lines represent 'fuzzy' introns of the standard and non-standard types respectively, those introns do not follow the 16 bp rule. Black straight lines ]-[denote gaps in the alignments.
Exons: Wide filled pink areas represent putative protein coding regions, narrow empty pink boxes represent the 5'UTR (on the left) and 3' UTR (on the right). Flags identify validated endings: cap site on the 5' side, polyadenylation site on the 3' side. Filled flags correspond to frequent events while empty flags have lesser supporting cDNAs (yet all are validated); at the 3' side, black flags are associated to the main AATAAA signal,
blue flags to any single letter variant of the main . More explanations are given in the
gene help file
Sequences: click on the numbers to get the DNA
Gene neighbors and Navigator on chromosome 1q41-q42.2
DEGS1
C
I
R
P
C
R
CNIH4
C
I
R
P
MIR320B2
C
I
R
P
NVL
C
10
20kb
0
DEGS1, 388 accessions
14 variants
jeybo, 2 accessions
swokley, 5 accessions
4 variants
CNIH4, 373 accessions
16 variants
farlerbu, 2 accessions
fawlerbu, 2 accessions
goywabo, 2 accessions
ferlerbu, 1 accession
foylerbu, 2 accessions
galerbu, 1 accession
gylerbu, 1 accession
rerlubo, 2 accessions
reylubo, 1 accession
sleewerbo, 1 accession
golerbu, 1 accession
gawlerbu, 3 accessions
gerlerbu, 1 accession
gorlerbu, 2 accessions
skarrorbu, 1 accession
jylerbu, 2 accessions
slerwerbo, 1 accession
sawlubo, 1 accession
koler, 1 accession
jerbo, 2 accessions
sluwerbo, 2 accessions
reelubo, 1 accession
feylerbu, 1 accession
slowerbo, 1 accession
forlerbu, 2 accessions
tarobo, 5 accessions
slawwerbo, 1 accession
gulerbu, 1 accession
MIR320B2, 1 accession
rikoyo, 1 accession
geylerbu, 5 accessions
rukoyo, 1 accession
jalerbu, 1 accession
sylubo, 1 accession
sulubo, 2 accessions
solubo, 1 accession
jolerbu, 1 accession
serlubo, 1 accession
NVL, 305 accessions, 41 variants
joybo, 7 accessions
ZOOM OUT
D :disease,
C :conserved,
I :interactions,
R :regulation,
P :publications
Read more...
C
R
FBXO28
C
I
R
P
DEGS1
C
I
R
P
C
R
CNIH4
C
I
R
P
CNIH3
C
R
MIR320B2
D
C
I
R
P
G
C
C
ACTBP11
G
R
R
G
C
C
I
R
P
NVL
C
R
C
I
R
P
WDR26
C
R
G
R
100kb
0
chosabo, 80 accessions
10 variants
FBXO28, 381 accessions
5 variants
DEGS1, 388 accessions
14 variants
jeybo, 2 accessions
swokley, 5 accessions
4 variants
CNIH4, 373 accessions
16 variants
CNIH3, 204 accessions
25 variants
skywerbo, 1 accession
sterleebu, 1 accession
reerobo, 1 accession
jybo, 8 accessions
skowerbo, 2 accessions
swarleebu, 1 accession
rerrobo, 1 accession
skawwerbo, 1 accession
cheerorbu, 1 accession
gawrobo, 2 accessions
sworleebu, 2 accessions
shyrorbu, 5 accessions
skerwerbo, 1 accession
swoyleebu, 4 accessions
blerrorbu, 1 accession
perlubo, 1 accession
bolerbu, 1 accession
berkor, 3 accessions
bawlerbu, 2 accessions
flororbu, 1 accession
berlerbu, 1 accession
tomara, 10 accessions
poylubo, 3 accessions
goybo, 2 accessions
boylerbu, 1 accession
dulerbu, 3 accessions
darlerbu, 2 accessions
derlerbu, 2 accessions
deylerbu, 1 accession
kiruro, 6 accessions, 2 variants
dorlerbu, 3 accessions
doylerbu, 3 accessions
rulubo, 1 accession
falerbu, 2 accessions
fylerbu, 3 accessions
swukley, 1 accession
folerbu, 1 accession
farlerbu, 2 accessions
fawlerbu, 2 accessions
goywabo, 2 accessions
ferlerbu, 1 accession
foylerbu, 2 accessions
galerbu, 1 accession
gylerbu, 1 accession
rerlubo, 2 accessions
reylubo, 1 accession
sleewerbo, 1 accession
golerbu, 1 accession
gawlerbu, 3 accessions
gerlerbu, 1 accession
gorlerbu, 2 accessions
skarrorbu, 1 accession
jylerbu, 2 accessions
slerwerbo, 1 accession
sawlubo, 1 accession
koler, 1 accession
jeelerbu, 1 accession
jeylerbu, 1 accession
jawabo, 1 accession
sleywerbo, 2 accessions
swawkley, 1 accession
slorwerbo, 1 accession
sweekley, 1 accession
keelerbu, 1 accession
varrobo, 4 accessions
lalerbu, 1 accession
sweykley, 2 accessions
kubo, 2 accessions
tulubo, 1 accession
skoyrorbu, 1 accession
sworkley, 9 accessions
karbo, 1 accession
baklor, 3 accessions
leylerbu, 1 accession
lorlerbu, 1 accession
loylerbu, 1 accession
noyuha, 1 accession
marlerbu, 2 accessions
tolubo, 1 accession
mawlerbu, 1 accession
meelerbu, 1 accession
rarrobo, 2 accessions
stawleebu, 1 accession
geywabo, 1 accession
steeleebu, 1 accession
skuwerbo, 1 accession
jubo, 1 accession
swyleebu, 2 accessions
stoykley, 6 accessions
swuleebu, 1 accession
jabo, 16 accessions
skarwerbo, 1 accession
swawleebu, 1 accession
wakoyo, 1 accession
pawlubo, 2 accessions
swerleebu, 1 accession
sweyleebu, 2 accessions
shurorbu, 1 accession
shorrorbu, 1 accession
bawkor, 1 accession
gloyrorbu, 1 accession
dalerbu, 1 accession
skoywerbo, 1 accession
plurorbu, 2 accessions
deelerbu, 2 accessions
jerbo, 2 accessions
sluwerbo, 2 accessions
reelubo, 1 accession
feylerbu, 1 accession
slowerbo, 1 accession
forlerbu, 2 accessions
tarobo, 5 accessions
slawwerbo, 1 accession
gulerbu, 1 accession
MIR320B2, 1 accession
rikoyo, 1 accession
geylerbu, 5 accessions
rukoyo, 1 accession
jalerbu, 1 accession
sylubo, 1 accession
sulubo, 2 accessions
solubo, 1 accession
jolerbu, 1 accession
serlubo, 1 accession
seylubo, 1 accession
jerlerbu, 2 accessions
terrobo, 2 accessions
kylerbu, 4 accessions
kulerbu, 2 accessions
kolerbu, 1 accession
karlerbu, 1 accession
kawlerbu, 3 accessions
toyrobo, 2 accessions
kerlerbu, 1 accession
varobo, 4 accessions
vurobo, 1 accession
talubo, 2 accessions
koylerbu, 1 accession
lylerbu, 1 accession
lulerbu, 2 accessions
lolerbu, 2 accessions
larlerbu, 1 accession
lawlerbu, 1 accession
lerlerbu, 1 accession
slarorbu, 5 accessions
smawerbo, 1 accession
malerbu, 1 accession
mulerbu, 1 accession
TP53BP2, 435 accessions
16 variants
LOC644214, 1 accession
ACTBP11, 13 accessions
LOC441124, 59 accessions
11 variants
risiyo, 10 accessions
2 variants
LOC724084, 25 accessions
NVL, 305 accessions, 41 variants
joybo, 7 accessions
plarkubo, 3 accessions
2 variants
WDR26, 578 accessions
14 variants
swoykley, 2 accessions
verrobo, 1 accession
LOC100288177, 1 accession
ZOOM IN
D :disease,
C :conserved,
I :interactions,
R :regulation,
P :publications
Read more...
Annotated mRNA diagrams
The mRNAs diagrams with the aligned cDNA sequence accessions and their mismatches are available in the mRNA pages accessible from the tab at the top of the page, or here:
In Flash:
.b , .a , .c , .t , .e , .g , .vt-u , .vk-u , .f , .h , .vs-u , .vr-u , .vn , .vb , .u , .d , .vj , .vd , .q , .i , .l , .k , .j , .s , .va , .vm , .ve , .vf , .vp-u , .vq , .p , .m , .vc , .vl , .vh , .n , .vo , .r , .vg , .o , .vi .
or in GIF:
.b , .a , .c , .t , .e , .g , .vt-u , .vk-u , .f , .h , .vs-u , .vr-u , .vn , .vb , .u , .d , .vj , .vd , .q , .i , .l , .k , .j , .s , .va , .vm , .ve , .vf , .vp-u , .vq , .p , .m , .vc , .vl , .vh , .n , .vo , .r , .vg , .o , .vi
Bibliography:   9 articles in PubMed
? Gene Summary
Gene on genome
mRNA: .a , .b , .c , .d , .e , .f , .g , .h , .i , .j , .k , .l , .m , .n , .o , .p , .q , .r , .s , .t , .u , .va , .vb , .vc , .vd , .ve , .vf , .vg , .vh , .vi , .vj , .vk-u , .vl , .vm , .vn , .vo , .vp-u , .vq , .vr-u , .vs-u , .vt-u
Alternative mRNAs features, proteins, introns, exons, sequences
Expression Tissue
Function, regulation, related genes C I
To
mine knowledge about the gene, please click the
'Gene Summary' or the
'Function, regulation, related genes ' tab at the top of the page. The
'Gene Summary' page includes all we learnt about the gene, functional annotations of neighboring genes, maps, links to other sites and the bibliography. The
'Function, regulation, related genes ' page includes Diseases (D), Pathways, GO annotations, conserved domains (C), interactions (I) reference into function, and pointers to all genes with the same functional annotation.
To
compare alternative variants , their summarized annotations, predicted proteins, introns and exons, or to access any sequence, click the
'Alternative mRNAs features' tab. To see a
specific mRNA variant diagram, sequence and annotation, click the variant name in the
'mRNA' tab. To examine
expression data from all cDNAs clustered in this gene by AceView, click the
'Expression tissue' .
If you know more about this gene, or found errors, please
share your knowledge. Thank you !