Homo sapiens complex locus MALL, encoding mal, T-cell differentiation protein-like.
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SUMMARY back to top
RefSeq summary
[MALL] This gene encodes an element of the machinery for raft-mediated trafficking in endothelial cells. The encoded protein, a member of the MAL proteolipid family, predominantly localizes in glycolipid- and cholesterol-enriched membrane (GEM) rafts. It interacts with caveolin-1. [provided by RefSeq].

RefSeq annotates one representative transcript (NM included in AceView variant.b), but Homo sapiens cDNA sequences in GenBank, dbEST, Trace and SRA, filtered against clone rearrangements, coaligned on the genome and clustered in a minimal non-redundant way by the manually supervised AceView program, support at least 17 spliced variants.

AceView synopsis, each blue text links to tables and details
Note that this locus is complex: it appears to produce several proteins with no sequence overlap.
Expression: According to AceView, this gene is expressed at high level, 3.4 times the average gene in this release. The sequence of this gene is defined by 384 GenBank accessions from 360 cDNA clones, some from stomach (seen 30 times), lung (28), colon (23), uterus (23), pancreas (20), prostate (16), testis (12) and 95 other tissues. We annotate structural defects or features in 28 cDNA clones.
Alternative mRNA variants and regulation: The gene contains 21 distinct introns (20 gt-ag, 1 gc-ag). Transcription produces 19 different mRNAs, 17 alternatively spliced variants and 2 unspliced forms. There are 8 probable alternative promotors, 7 non overlapping alternative last exons and 10 validated alternative polyadenylation sites (see the diagram). The mRNAs appear to differ by truncation of the 5' end, truncation of the 3' end, presence or absence of 10 cassette exons, overlapping exons with different boundaries, splicing versus retention of 2 introns.
4 variants were isolated in vivo, despite the fact that they are predicted targets of nonsense mediated mRNA decay (NMD).
Efficacy of translation may be reduced by the presence of a shorter translated product (uORF) initiating at an AUG upstream of the main open reading frame (in variant bAug10, cAug10).
Function: There are 7 articles specifically referring to this gene in PubMed. Functionally, the gene has been tested for association to diseases (Kidney Diseases, Cystic; Melanoma; Skin Neoplasms) and proposed to participate in a process (cholesterol homeostasis). Proteins are expected to have molecular function (protein binding) and to localize in various compartments (clathrin-coated vesicle, cytoplasmic membrane-bounded vesicle, Golgi membrane, membrane raft, plasma membrane, endoplasmic reticulum membrane, integral to membrane). Putative protein interactors have been described (CAV2ANDCAV1, CREB3).
Protein coding potential: 10 spliced and the unspliced mRNAs putatively encode good proteins, altogether 10 different isoforms (8 complete, 2 COOH complete), some containing domains gaa1-like, GPI transamidase component, Membrane-associating domain [Pfam], some transmembrane domains [Psort2]. The remaining 8 mRNA variants (7 spliced, 1 unspliced; 3 partial) appear not to encode good proteins.
2 isoforms are annotated using as Met a Kozak-compatible non-AUG start, thereby gaining a minimum of 66 amino acids N-terminal to the first AUG.

Please quote: AceView: a comprehensive cDNA-supported gene and transcripts annotation, Genome Biology 2006, 7(Suppl 1):S12.
Map on chromosome 2, links to other databases and other names
Map: This gene MALL maps on chromosome 2, at 2q13 according to Entrez Gene. In AceView, it covers 352.81 kb, from 111194254 to 110841442 (NCBI 37, August 2010), on the reverse strand.
Links to: the SNP view, gene overviews from Entrez Gene 7851, GeneCards, expression data from ECgene, UniGene, molecular and other annotations from UCSC, or our GOLD analysis.
The previous AceView annotation is here.
Other names: The gene is also known as MALL, BENE, MGC4419, LOC7851, flakorbu or flykorbu, torubo. It has been described as MAL-like protein.
Closest AceView homologs in other species ?
The closest mouse gene, according to BlastP, is the AceView gene Mall (e=3 10-44).
The closest A.thaliana gene, according to BlastP, is the AceView gene AT5G19130 (e=7 10-09)
RNA_seq discoveries back to top
Expression/conservation in primates tissues evaluated by cross-mapping to human. back to top
MALL Gene expression in 15 primates, 16 tissues, from the NHPRTR project in sFPKM BAB SkeletalMuscle WholeBlood CHP Kidney Liver Lung Spleen CMC CMM Cerebellum HUM Brain Colon Heart LymphNode Ovary Testis JMI BoneMarrow MLM OWL PTM RMC RMI Pituitary SQM Thymus MST SMY RTL 0.19 0.59 1.02 5.79 2.52 3.10 1.45 8.78 3.57 2.19 3.10 16.4 0.04 0.24 1.91 1.26 1.02 0.10 0.09 1.26 0.09 0.08 0.12 0.08 0.32 0.14 0.15 0.39 0.10 0.08 0.13 0.59 0.15 0.10 0.39 0.19 0.08 0.10 0.83 0.13 0.07 0.07 0.11 0.07 1.02 0.10 0.11 0.89 0.14 0.07 0.13 0.11 2.35 0.12 0.08 1.55 0.24 0.13 1.45 0.11 0.06 0.09 0.08 0.34 0.11 0.55 0.14 0.11 0.06 0.17 0.12 2.05 0.10 0.10 0.08 0.10 0.08 0.07 0.29 2.19 0.08 0.42 0.19 1.18 0.13 0.14 0.14 0.63 0.08 0.12 0.39 Expression quantiles None Weak 1 2 3 4 5 6 7 8 10 20 This gene All genes log2 distributions RNA-seq gene expression profile across 16 selected tissues from the Non-Human Primates Reference Transcriptome Resource (link to NHPRTR project).
- Primates: Apes (HUM: Human (Illumina BodyMap 2), CHP: Chimpanzee), Old World monkeys (PTM: Pig-Tailed Macaque, JMI Japanese Macaque, RMI Rhesus Macaque Indian, RMC Rhesus Macaque Chinese, CMM Cynomolgus Macaque Mauritian, CMC Cynomolgus Macaque Chinese, BAB Olive Baboon, SMY Sooty Mangabey); New World monkeys (MST common Marmoset, SQM Squirrel Monkey, OWL Owl Monkey); and Lemurs (MLM Mouse Lemur, RTL Ring-Tailed Lemur).
- The level for significantly expressed genes is color coded in 8 equal sized bins (light to dark green). Light gray is for weak not-accurately measured expression (2 to 8 reads above intergenic background); dark gray for no expression or no sequence conservation (0 read in gene). The plot to the right shows the distribution of measured expression values in all tissues for all genes (blue) and for this gene (green), in Magic index = log2(1000 sFPKM).
You may also examine the strand-specific genome coverage plots on the experimental AceView/Magic hub at UCSC, by tissue or by species. Tracks may be slow to load; please reload if some tracks come up yellow-greenish, and thanks to UCSC for the great work!.
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          Complete gene on genome diagram: back to top
Please choose between the zoomable GIF version., and the HTML5/SVG version.
This diagram shows in true scale the gene on the genome, the mRNAs and the cDNA clones.
Compact gene diagram back to top
Gene MALL 5' 3' encoded on minus strand of chromosome 2 from 111,194,254 to 110,841,442 22 e a-u 1 22 42 j 5323 6799 7753 b [NM] 1 15 22 42 f 118 6799 7753 c 358 6799 7753 d 72 15 22 42 g 36 5323 s k 72 86 h 6 17 6799 7753 i 6 42 o 7753 l 1 15 22 42 p 70 m 72 15 22 10 6799 n q-u 6 10 6799 r 1 2kb 0 718 bp exon 718 bp exon 1135 bp [gt-ag] intron 20 GenBank accessions 2 RNA-seq supporting reads 2 Neuroblastoma 437 bp exon 2 accessions, some from human skeletal muscle (seen once) 437 bp exon 1820 bp exon 1820 bp exon 14 accessions, some from uterus (seen 6 times) well-differentiated endometrialadenocarcinoma 7 pooled tumors (3), embryonic stem cells embryoid bodiesderived from H1 H7 and H9 cells (2), kidney (2) kidney tumor (2) capped 5' end, 1 accession Validated 3' end, 1 accession Validated 3' end, 1 accession 1820 bp exon 156 bp exon 26545 bp [gt-ag] intron 1 GenBank accession 82 bp exon 1135 bp [gt-ag] intron 20 GenBank accessions 2 RNA-seq supporting reads 2 Neuroblastoma 115 bp exon 115 bp exon 3266 bp [gt-ag] intron 22 GenBank accessions 20 RNA-seq supporting reads 4 UHR pooled cells 16 Neuroblastoma 1 accession from placenta from pre-eclamptic placenta 267 bp exon 878 bp exon 878 bp exon 75 bp uORF 878 bp exon 878 bp exon 23917 bp [gt-ag] intron 88 GenBank accessions 5235 RNA-seq supporting reads 918 UHR pooled cells 298 Brain 3986 Neuroblastoma 33 Other (also 2407 Primates bodymap) 168 bp exon 168 bp exon 3905 bp [gt-ag] intron 110 GenBank accessions 6689 RNA-seq supporting reads 947 UHR pooled cells 486 Brain 51 Blood 5129 Neuroblastoma 76 Other (also 3443 Primates bodymap) 126 bp exon 126 bp exon 1814 bp [gt-ag] intron 110 GenBank accessions 7643 RNA-seq supporting reads 1054 UHR pooled cells 582 Brain 61 Blood 5848 Neuroblastoma 98 Other (also 3522 Primates bodymap) 1888 bp exon 1888 bp exon 186 accessions, NM_005434.4 some from stomach (seen 24 times) pancreas (15), lung (14) prostate (11), colon (9) capped 5' end, 50 accessions Validated 3' end, 2 accessions Validated 3' end, 13 accessions 1888 bp exon 64 bp exon 12471 bp [gt-ag] intron 1 GenBank accession 482 bp exon 482 bp exon 15641 bp [gt-ag] intron 14 GenBank accessions 1 RNA-seq supporting reads 1 Blood 82 bp exon 1135 bp [gt-ag] intron 20 GenBank accessions 2 RNA-seq supporting reads 2 Neuroblastoma 115 bp exon 115 bp exon 3266 bp [gt-ag] intron 22 GenBank accessions 20 RNA-seq supporting reads 4 UHR pooled cells 16 Neuroblastoma 1 accession from normal endometrium mid-secretory phase,cycle day 23 from uterus 143 bp exon 123 bp exon 123 bp exon 45 bp uORF 123 bp exon 123 bp exon 26246 bp [gt-ag] intron 1 GenBank accession 117 RNA-seq supporting reads 2 Brain 115 Neuroblastoma (also 15 Primates bodymap) 168 bp exon 168 bp exon 3905 bp [gt-ag] intron 110 GenBank accessions 6689 RNA-seq supporting reads 947 UHR pooled cells 486 Brain 51 Blood 5129 Neuroblastoma 76 Other (also 3443 Primates bodymap) 126 bp exon 126 bp exon 1814 bp [gt-ag] intron 110 GenBank accessions 7643 RNA-seq supporting reads 1054 UHR pooled cells 582 Brain 61 Blood 5848 Neuroblastoma 98 Other (also 3522 Primates bodymap) 142 bp exon 142 bp exon 1 accession from lung capped 5' end, 1 accession 142 bp exon 199 bp exon 199 bp exon 331890 bp [gt-ag] intron 3 GenBank accessions 355 RNA-seq supporting reads 35 Brain 10 Blood 305 Neuroblastoma 5 Other 168 bp exon 3905 bp [gt-ag] intron 110 GenBank accessions 6689 RNA-seq supporting reads 947 UHR pooled cells 486 Brain 51 Blood 5129 Neuroblastoma 76 Other (also 3443 Primates bodymap) 126 bp exon 1814 bp [gt-ag] intron 110 GenBank accessions 7643 RNA-seq supporting reads 1054 UHR pooled cells 582 Brain 61 Blood 5848 Neuroblastoma 98 Other (also 3522 Primates bodymap) 238 bp exon 6 accessions, some from colon (seen 2 times) brain (once), head normal (once) hippocampus (once), lung (once) capped 5' end, 1 accession 238 bp exon 1949 bp exon 9293 bp [gt-ag] intron 3 GenBank accessions 69 RNA-seq supporting reads 1 UHR pooled cells 68 Neuroblastoma 482 bp exon 482 bp exon 15641 bp [gt-ag] intron 14 GenBank accessions 1 RNA-seq supporting reads 1 Blood 82 bp exon 1135 bp [gt-ag] intron 20 GenBank accessions 2 RNA-seq supporting reads 2 Neuroblastoma 115 bp exon 115 bp exon 3266 bp [gt-ag] intron 22 GenBank accessions 20 RNA-seq supporting reads 4 UHR pooled cells 16 Neuroblastoma 54 accessions, some from uterus (seen 9 times) testis (8), serous papillary carcinoma high grade, 2pooled tumors (7) liver and spleen (2) moderately-differentiated endometrialadenocarcinoma 3 pooled tumors (2) Validated 3' end, 2 accessions Validated 3' end, 7 accessions Validated 3' end, 3 accessions 994 bp exon 121 bp exon 121 bp exon 2132 bp [gt-ag] intron 1 GenBank accession 35 RNA-seq supporting reads 35 Neuroblastoma (also 6 Primates bodymap) 197 bp exon 23917 bp [gt-ag] intron 88 GenBank accessions 5235 RNA-seq supporting reads 918 UHR pooled cells 298 Brain 3986 Neuroblastoma 33 Other (also 2407 Primates bodymap) 160 bp exon 1 accession from placenta capped 5' end, 1 accession 160 bp exon 749 bp exon 749 bp exon 135 bp [gc-ag] intron 1 GenBank accession 13 RNA-seq supporting reads 4 UHR pooled cells 6 Brain 3 Neuroblastoma (also 29 Primates bodymap) 834 bp exon 72 accessions, some from lung (seen 11 times) colon (9), stomach (6) head neck (5), pancreas (5) Validated 3' end, 2 accessions Validated 3' end, 14 accessions 834 bp exon 634 bp exon 634 bp exon 45 bp uORF 634 bp exon 634 bp exon 9293 bp [gt-ag] intron 3 GenBank accessions 69 RNA-seq supporting reads 1 UHR pooled cells 68 Neuroblastoma 90 bp exon 90 bp exon 179 bp [gt-ag] intron 3 GenBank accessions 2 RNA-seq supporting reads 2 Neuroblastoma 213 bp exon 213 bp exon 213 bp exon 36263 bp [gt-ag] intron 1 GenBank accession 85 RNA-seq supporting reads 15 Brain 67 Neuroblastoma 3 Other 2 accessions, some from placenta (seen 2 times) capped 5' end, 1 accession 987 bp exon 134 bp exon 134 bp exon 18083 bp [gt-ag] intron 1 GenBank accession 5 RNA-seq supporting reads 3 UHR pooled cells 2 Neuroblastoma 106 bp exon 5728 bp [gt-ag] intron 1 GenBank accession 16 RNA-seq supporting reads 5 UHR pooled cells 11 Neuroblastoma 168 bp exon 168 bp exon 3905 bp [gt-ag] intron 110 GenBank accessions 6689 RNA-seq supporting reads 947 UHR pooled cells 486 Brain 51 Blood 5129 Neuroblastoma 76 Other (also 3443 Primates bodymap) 126 bp exon 1814 bp [gt-ag] intron 110 GenBank accessions 7643 RNA-seq supporting reads 1054 UHR pooled cells 582 Brain 61 Blood 5848 Neuroblastoma 98 Other (also 3522 Primates bodymap) 1 accession from thyroid 46 bp exon 172 bp exon 172 bp exon 16858 bp [gt-ag] intron 6 GenBank accessions 115 bp exon 115 bp exon 3266 bp [gt-ag] intron 22 GenBank accessions 20 RNA-seq supporting reads 4 UHR pooled cells 16 Neuroblastoma 5 accessions, some from testis (seen 2 times) brain (once), lung (once) medulla (once), primary lung epithelial cells (once) Validated 3' end, 4 accessions 491 bp exon 201 bp exon 1814 bp [gt-ag] intron 110 GenBank accessions 7643 RNA-seq supporting reads 1054 UHR pooled cells 582 Brain 61 Blood 5848 Neuroblastoma 98 Other (also 3522 Primates bodymap) 492 bp exon 2 accessions, some from liver (seen once) thalamus (once) 492 bp exon 127 bp exon 10422 bp [gt-ag] intron 1 GenBank accession 90 bp exon 179 bp [gt-ag] intron 3 GenBank accessions 2 RNA-seq supporting reads 2 Neuroblastoma 213 bp exon 213 bp exon 15641 bp [gt-ag] intron 14 GenBank accessions 1 RNA-seq supporting reads 1 Blood 82 bp exon 1135 bp [gt-ag] intron 20 GenBank accessions 2 RNA-seq supporting reads 2 Neuroblastoma 115 bp exon 3266 bp [gt-ag] intron 22 GenBank accessions 20 RNA-seq supporting reads 4 UHR pooled cells 16 Neuroblastoma 1 accession from placenta from pre-eclamptic placenta 150 bp exon 334 bp exon 334 bp exon 29930 bp [gt-ag] intron 2 GenBank accessions 68 RNA-seq supporting reads 15 UHR pooled cells 1 Brain 52 Neuroblastoma (also 10 Primates bodymap) 735 bp exon 2 accessions capped 5' end, 1 accession 735 bp exon 236 bp exon 236 bp exon 9293 bp [gt-ag] intron 3 GenBank accessions 69 RNA-seq supporting reads 1 UHR pooled cells 68 Neuroblastoma 90 bp exon 179 bp [gt-ag] intron 3 GenBank accessions 2 RNA-seq supporting reads 2 Neuroblastoma 213 bp exon 213 bp exon 15641 bp [gt-ag] intron 14 GenBank accessions 1 RNA-seq supporting reads 1 Blood 82 bp exon 1135 bp [gt-ag] intron 20 GenBank accessions 2 RNA-seq supporting reads 2 Neuroblastoma 115 bp exon 314917 bp [gt-ag] intron 2 GenBank accessions 8 RNA-seq supporting reads 4 Brain 1 Blood 3 Neuroblastoma 168 bp exon 3905 bp [gt-ag] intron 110 GenBank accessions 6689 RNA-seq supporting reads 947 UHR pooled cells 486 Brain 51 Blood 5129 Neuroblastoma 76 Other (also 3443 Primates bodymap) 2 accessions, some from placenta (seen once) testis (once) 90 bp exon 582 bp exon 582 bp exon 1 accession from trachea capped 5' end, 1 accession 582 bp exon 137 bp exon 16858 bp [gt-ag] intron 6 GenBank accessions 115 bp exon 314917 bp [gt-ag] intron 2 GenBank accessions 8 RNA-seq supporting reads 4 Brain 1 Blood 3 Neuroblastoma 168 bp exon 168 bp exon 3905 bp [gt-ag] intron 110 GenBank accessions 6689 RNA-seq supporting reads 947 UHR pooled cells 486 Brain 51 Blood 5129 Neuroblastoma 76 Other (also 3443 Primates bodymap) 112 bp exon 1 accession from kidney capped 5' end, 1 accession 112 bp exon Alternative mRNAs are shown aligned from 5' to 3' on a virtual genome where introns have been shrunk to a minimal length. Exon size is proportional to length, intron height reflects the number of cDNAs supporting each intron, the small numbers show the support of the introns in deep sequencing (with details in mouse-over) . Introns of the same color are identical, of different colors are different. 'Good proteins' are pink, partial or not-good proteins are yellow, uORFs are green. 5' cap or3' poly A flags show completeness of the transcript.
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Sequences: click on the numbers to get the DNA back to top
mRNA variant mRNA matching the genome Best predicted protein 5' UTR 3' UTR uORF Upstream sequence Transcription
unit
pre-mRNA		 Downstream sequence
aAug10-unspliced 1820 bp 187 aa 873 bp 383 bp 2kb including Promoter 1820 bp 1kb
bAug10 3060 bp 153 aa 773 bp 1825 bp 72 bp 2kb including Promoter 32696 bp 1kb
cAug10 559 bp 149 aa 30 bp 79 bp 42 bp 2kb including Promoter 32524 bp 1kb
dAug10 731 bp 143 aa 124 bp 175 bp 2kb including Promoter 338340 bp 1kb
eAug10 1155 bp 139 aa 360 bp 375 bp 2kb possibly including promoter 2290 bp 1kb
fAug10 886 bp 137 aa 276 bp 196 bp 2kb possibly including promoter 33399 bp 1kb
gAug10 3622 bp 137 aa 2161 bp 1047 bp 2kb possibly including promoter 32957 bp 1kb
hAug10 1924 bp 121 aa 515 bp 1043 bp 42 bp 2kb including Promoter 47659 bp 1kb
iAug10 580 bp 120 aa 29 bp 188 bp 2kb probably including promoter 30110 bp 1kb
jAug10 620 bp 99 aa 320 bp 2kb 31566 bp 1kb
kAug10 1583 bp 94 aa 613 bp 685 bp 2kb 1718 bp 1kb
lAug10 693 bp 87 aa 429 bp 2kb 2507 bp 1kb
mAug10 1069 bp 55 aa 229 bp 672 bp 2kb including Promoter 30999 bp 1kb
nAug10 994 bp 121 aa 117 bp 511 bp 2kb 346064 bp 1kb
oAug10 778 bp 62 aa 588 bp 2kb 20902 bp 1kb
pAug10 777 bp 79 aa 537 bp 2kb 31420 bp 1kb
qAug10-unspliced 582 bp 36 aa 8 bp 463 bp 2kb including Promoter 582 bp 1kb
rAug10 532 bp 85 aa 276 bp 2kb including Promoter 336212 bp 1kb
sAug10 478 bp 96 aa 28 bp 159 bp 2kb including Promoter 26527 bp 1kb

Gene neighbors and Navigator on chromosome 2q13 back to top
RGPD5 C I R P LIMS3-LOC440895andGPAA1P1 C R P C C R G C C G C R C C R C RPL22P12 MIR4267 G P D C I R P MALL D C I R P NPHP1 R NCRNA00116 G C C G R P C R C C C R P RGPD6 D C I R P BUB1 100kb 0 RGPD5, 387 accessions 17 variants LIMS3-LOC440895andGPAA1P1 186 accessions, 22 variants puswarby, 1 accession peeswarby, 1 accession derpeybo, 163 accessions 6 variants LOC645135, 2 accessions ruswarby, 3 accessions LOC100287074, 1 accession flakorbu, 256 accessions 11 variants saswarby, 1 accession syswarby, 1 accession kena, 2 accessions tunumo, 1 accession ACOXL, 39 accessions, 12 variants fleekubo, 1 accession glamorbo, 1 accession cheykler, 1 accession blorkubo, 1 accession bleekubo, 5 accessions rupubo, 1 accession bleemorbo, 1 accession fyjybo, 7 accessions bawpeybo, 2 accessions blakubo, 2 accessions fuklee, 6 accessions borpeybo, 1 accession farklee, 48 accessions shakubo, 4 accessions choykubo, 15 accessions cherkubo, 1 accession cheekubo, 1 accession chokubo, 3 accessions chykubo, 2 accessions geykubo, 1 accession gorkubo, 1 accession goykubo, 2 accessions jakubo, 1 accession glakorbu, 1 accession honumo, 1 accession jukubo, 2 accessions jokubo, 1 accession dypeybo, 3 accessions jeykubo, 2 accessions flarubo, 1 accession dupeybo, 2 accessions flarkorbu, 2 accessions darpeybo, 1 accession kakubo, 1 accession flokorbu, 1 accession kykubo, 2 accessions flukorbu, 2 accessions blorkorbu, 3 accessions bleykorbu, 1 accession bleekorbu, 1 accession blawkorbu, 4 accessions torubo, 1 accession keepeybo, 2 accessions blawrubo, 1 accession skeyneebo, 3 accessions sherkorbu, 1 accession tykubo, 7 accessions sheekorbu, 1 accession charkler, 3 accessions roswarby, 1 accession rarswarby, 1 accession koykubo, 1 accession blyrubo, 1 accession vurubo, 1 accession reykorbu, 1 accession rawswarby, 1 accession rorkorbu, 1 accession roykorbu, 1 accession ninumo, 1 accession verrubo, 2 accessions wyrubo, 1 accession larpeybo, 1 accession leekubo, 1 accession rerswarby, 3 accessions jeekubo, 3 accessions lopeybo, 3 accessions lypeybo, 1 accession fluder, 3 accessions wakubo, 2 accessions korpeybo, 1 accession nunumo, 1 accession seyswarby, 1 accession veykubo, 1 accession verkubo, 3 accessions veekubo, 2 accessions vykubo, 3 accessions tuswarby, 1 accession sorkubo, 2 accessions nenumo, 1 accession kopeybo, 1 accession karpeybo, 1 accession tokubo, 1 accession skeeneebo, 2 accessions keekubo, 3 accessions turubo, 1 accession varswarby, 1 accession torkubo, 3 accessions voyswarby, 2 accessions voykubo, 1 accession zarswarby, 1 accession zerswarby, 1 accession lupeybo, 1 accession charswarby, 1 accession woykubo, 1 accession soyrubo, 2 accessions zokubo, 1 accession zorkubo, 1 accession shuswarby, 1 accession zoykubo, 3 accessions geekubo, 3 accessions gawkubo, 1 accession glarkorbu, 3 accessions skyveybo, 6 accessions shokubo, 1 accession shykubo, 1 accession sheekubo, 3 accessions mupeybo, 2 accessions klokorbu, 1 accession fawkubo, 1 accession meypeybo, 1 accession fawjarbo, 1 accession bloymorbo, 7 accessions fleemorbo, 1 accession rukorbu, 1 accession fykubo, 1 accession chorkler, 7 accessions dorkubo, 1 accession bleykubo, 3 accessions sheyswarby, 10 accessions jogorbu, 2 accessions fleymorbo, 1 accession jargorbu, 1 accession jawgorbu, 1 accession kleerubo, 5 accessions blyder, 14 accessions karpubo, 3 accessions gyjybo, 1 accession RPL22P12, 2 accessions cheekler, 19 accessions 2 variants korgorbu, 1 accession koygorbu, 3 accessions 2 variants gojybo, 1 accession lagorbu, 4 accessions woklo, 1 accession warklo, 7 accessions lygorbu, 1 accession gawjybo, 1 accession korpubo, 3 accessions 2 variants wawklo, 2 accessions lugorbu, 1 accession blarswarby, 2 accessions logorbu, 1 accession blorswarby, 4 accessions plerkorbu, 12 accessions flerkubo, 1 accession rykorbu, 1 accession flarkubo, 5 accessions flokubo, 1 accession flykubo, 1 accession blawpabo, 1 accession bloykubo, 2 accessions dyjobu, 10 accessions vyjybo, 3 accessions blerkubo, 1 accession blawkubo, 7 accessions blarkubo, 1 accession jygorbu, 1 accession deynybo, 1 accession rurubo, 7 accessions blokubo, 1 accession blukubo, 1 accession blykubo, 1 accession feykubo, 1 accession barder, 2 accessions gloykorbu, 3 accessions gakubo, 1 accession gykubo, 1 accession glawkorbu, 6 accessions charkubo, 3 accessions chukubo, 1 accession chakubo, 3 accessions gerkubo, 3 accessions pajarbo, 1 accession woylaw, 1 accession floykorbu, 1 accession flarrubo, 2 accessions jykubo, 1 accession jerkubo, 1 accession dapeybo, 1 accession pyswarby, 1 accession flawkorbu, 1 accession flykorbu, 2 accessions blerkorbu, 3 accessions blarkorbu, 1 accession bloyrubo, 1 accession blakorbu, 1 accession deypeybo, 1 accession kerkubo, 1 accession sharkorbu, 2 accessions MIR4267, 1 accession lukubo, 1 accession sakorbu, 1 accession vorubo, 1 accession varrubo, 1 accession nanumo, 2 accessions, 2 variants larkubo, 2 accessions veyrubo, 1 accession wokubo, 1 accession royswarby, 1 accession wykubo, 1 accession tyswarby, 1 accession toswarby, 1 accession vyrubo, 1 accession serkubo, 1 accession tarswarby, 1 accession tawswarby, 1 accession shawkorbu, 1 accession soykubo, 2 accessions terswarby, 1 accession chokler, 8 accessions tukubo, 1 accession torswarby, 1 accession voswarby, 4 accessions teyrubo, 1 accession teekubo, 3 accessions terkubo, 4 accessions teykubo, 1 accession vakubo, 3 accessions vawswarby, 3 accessions wyswarby, 2 accessions warswarby, 5 accessions weeswarby, 1 accession nonumo, 1 accession zuswarby, 1 accession zoswarby, 1 accession zorswarby, 7 accessions zoyswarby, 2 accessions tanumo, 4 accessions choswarby, 3 accessions jawkubo, 1 accession chorswarby, 1 accession weykubo, 3 accessions workubo, 2 accessions tinumo, 1 accession zukubo, 1 accession shaswarby, 1 accession zawkubo, 1 accession zeekubo, 1 accession pujarbo, 1 accession pyjarbo, 1 accession glukorbu, 2 accessions glokorbu, 3 accessions garkubo, 1 accession gokubo, 1 accession fleyrubo, 1 accession smeedo, 15 accessions skugorbu, 4 accessions gleypobo, 48 accessions choneebo, 1 accession shawkubo, 6 accessions feekubo, 2 accessions jerpubo, 2 accessions sworkabo, 7 accessions reerubo, 1 accession sherswarby, 1 accession farjybo, 5 accessions jugorbu, 1 accession dorklee, 1 accession klurubo, 1 accession joygorbu, 1 accession plajybu, 5 accessions pleekorbu, 1 accession dokubo, 4 accessions foyjybo, 1 accession gujybo, 3 accessions sinayo, 1 accession cherkler, 1 accession kogorbu, 4 accessions kawgorbu, 1 accession keegorbu, 1 accession kergorbu, 1 accession blyswarby, 4 accessions 2 variants keriro, 2 accessions keygorbu, 1 accession smeywawbo, 1 accession LOC645129, 3 accessions MALL, 372 accessions, 19 variants NPHP1, 116 accessions 17 variants NCRNA00116, 83 accessions 5 variants LOC442041, 3 accessions blarrubo, 2 accessions LOC151009, 202 accessions 9 variants sumemo, 94 accessions 10 variants worswarby, 1 accession zyswarby, 1 accession RGPD6, 388 accessions 17 variants BUB1, 372 accessions, 17 variants ZOOM IN                D:disease,C:conserved,I:interactions,R:regulation,P:publications         Read more...
Annotated mRNA diagrams back to top
Bibliography:               7 articles in PubMed back to top
? Gene Summary Gene on genome mRNA:.a-u, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p, .q-u, .r, .s Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI

To mine knowledge about the gene, please click the 'Gene Summary' or the 'Function, regulation, related genes ' tab at the top of the page. The 'Gene Summary' page includes all we learnt about the gene, functional annotations of neighboring genes, maps, links to other sites and the bibliography. The 'Function, regulation, related genes ' page includes Diseases (D), Pathways, GO annotations, conserved domains (C), interactions (I) reference into function, and pointers to all genes with the same functional annotation.
To compare alternative variants, their summarized annotations, predicted proteins, introns and exons, or to access any sequence, click the 'Alternative mRNAs features' tab. To see a specific mRNA variant diagram, sequence and annotation, click the variant name in the 'mRNA' tab. To examine expression data from all cDNAs clustered in this gene by AceView, click the 'Expression tissue'.

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