Homo sapiens complex locus CNOT8, encoding CCR4-NOT transcription complex, subunit 8.
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SUMMARY back to top
RefSeq annotates one representative transcript (NM included in AceView variant.c), but Homo sapiens cDNA sequences in GenBank, dbEST, Trace and SRA, filtered against clone rearrangements, coaligned on the genome and clustered in a minimal non-redundant way by the manually supervised AceView program, support at least 29 spliced variants.

AceView synopsis, each blue text links to tables and details
Note that this locus is complex: it appears to produce several proteins with no sequence overlap.
Expression: According to AceView, this gene is expressed at high level, 3.4 times the average gene in this release. The sequence of this gene is defined by 645 GenBank accessions, some from brain (seen 52 times), hippocampus (17), lung (16), thymus (14), testis (12), uterus (12), amygdala (11) and 129 other tissues.
Alternative mRNA variants and regulation: The gene contains 30 distinct introns (27 gt-ag, 3 gc-ag). Transcription produces 34 different mRNAs, 29 alternatively spliced variants and 5 unspliced forms. There are 4 probable alternative promotors, 5 non overlapping alternative last exons and 6 validated alternative polyadenylation sites (see the diagram). The mRNAs appear to differ by truncation of the 5' end, truncation of the 3' end, presence or absence of 15 cassette exons, overlapping exons with different boundaries, splicing versus retention of 2 introns. 165 bp of this gene are antisense to spliced gene C5orf4.aAug10, raising the possibility of regulated alternate expression.
Note that mRNA .vdAug10 was found in vivo, although it is a predicted target of nonsense mediated mRNA decay (NMD).
Efficacy of translation may be reduced by the presence of a shorter translated product (uORF) initiating at an AUG upstream of the main open reading frame (in variant cAug10, eAug10).
Function: There are 11 articles specifically referring to this gene in PubMed. Functionally, the gene has been tested for association to a disease (Myelodysplastic Syndromes) and proposed to participate in pathway (RNA degradation). Proteins are expected to have molecular function (nucleic acid binding) and to localize in various compartments (cytoplasm, extracellular space, mitochondrion). Putative protein interactors have been described (BTG1, BTG2, CNOT1, CNOT2, CNOT3, CNOT4, CNOT6, CNOT10ANDSUGT1P2, MCM7).
Protein coding potential: 26 spliced mRNAs putatively encode good proteins, altogether 20 different isoforms (9 complete, 1 COOH complete, 10 partial), some containing CAF1 family ribonuclease domain [Pfam]; 2 of the 9 complete proteins appear to be secreted. The remaining 8 mRNA variants (3 spliced, 5 unspliced; 4 partial) appear not to encode good proteins.
2 isoforms are annotated using as Met a Kozak-compatible non-AUG start, thereby gaining a minimum of 99 amino acids N-terminal to the first AUG. Finally proteins from this gene may be modulated by phosphorylation; ubiquitination, as detailed at PhosphoSite.

Please quote: AceView: a comprehensive cDNA-supported gene and transcripts annotation, Genome Biology 2006, 7(Suppl 1):S12.
Map on chromosome 5, links to other databases and other names
Map: This gene CNOT8 maps on chromosome 5, at 5q31-q33 according to Entrez Gene. In AceView, it covers 18.85 kb, from 154237513 to 154256360 (NCBI 37, August 2010), on the direct strand.
Links to: manual annotations from KEGG_03018, PhosphoSite, the SNP view, gene overviews from Entrez Gene 9337, GeneCards, expression data from ECgene, UniGene, molecular and other annotations from UCSC, or our GOLD analysis.
The previous AceView annotation is here.
Other names: The gene is also known as CNOT8, CAF1, POP2, CALIF or hCAF1, LOC9337. It has been described as CCR4-NOT transcription complex subunit 8, CAF2, CALIFp, CAF1-like protein, CCR4-associated factor 8, PGK promoter directed over production.
Closest AceView homologs in other species ?
The closest mouse gene, according to BlastP, is the AceView gene Cnot8 (e= 10-172).
The closest C.elegans gene, according to BlastP, is the AceView/WormGene ccf-1 (e=5 10-70), which may contain interesting functional annotation.
The closest A.thaliana genes, according to BlastP, are the AceView genes AT1G80780 (e=10-78), AT2G32070 (e=4 10-78), AT5G10960 (e=4 10-74), which may contain interesting functional annotation
RNA_seq discoveries back to top
Expression/conservation in primates tissues evaluated by cross-mapping to human. back to top
CNOT8 Gene expression in 15 primates, 16 tissues, from the NHPRTR project in sFPKM BAB SkeletalMuscle WholeBlood CHP Kidney Liver Lung Spleen CMC CMM Cerebellum HUM Brain Colon Heart LymphNode Ovary Testis JMI BoneMarrow MLM OWL PTM RMC RMI Pituitary SQM Thymus MST SMY RTL 8.19 53.2 13.3 7.64 32.8 5.40 24.8 26.6 43.2 11.6 46.3 28.5 32.8 20.2 26.6 11.6 46.3 37.6 10.1 18.8 37.6 61.1 32.8 26.6 17.6 20.2 23.2 18.8 28.5 40.3 40.3 57.1 43.2 24.8 14.3 49.7 7.64 9.41 10.8 20.2 18.8 20.2 21.6 11.6 16.4 10.8 23.2 24.8 16.4 8.19 6.21 11.6 10.8 10.1 5.79 2.52 13.3 12.4 18.8 17.6 16.4 10.8 30.6 13.3 15.3 24.8 18.8 12.4 17.6 49.7 14.3 14.3 8.19 35.1 28.5 28.5 20.2 28.5 14.3 43.2 16.4 8.78 40.3 35.1 13.3 32.8 24.8 16.4 20.2 17.6 11.6 23.2 14.3 17.6 12.4 40.3 35.1 9.41 26.6 28.5 9.41 14.3 8.19 7.13 5.40 14.3 10.8 15.3 13.3 26.6 7.13 32.8 17.6 26.6 12.4 11.6 8.19 23.2 23.2 20.2 17.6 28.5 14.3 20.2 18.8 21.6 16.4 24.8 32.8 30.6 30.6 13.3 20.2 32.8 16.4 37.6 37.6 14.3 43.2 20.2 23.2 15.3 20.2 14.3 37.6 8.78 32.8 40.3 32.8 49.7 15.3 28.5 30.6 37.6 37.6 11.6 13.3 Expression quantiles None Weak 1 2 3 4 5 6 7 8 10 20 This gene All genes log2 distributions RNA-seq gene expression profile across 16 selected tissues from the Non-Human Primates Reference Transcriptome Resource (link to NHPRTR project).
- Primates: Apes (HUM: Human (Illumina BodyMap 2), CHP: Chimpanzee), Old World monkeys (PTM: Pig-Tailed Macaque, JMI Japanese Macaque, RMI Rhesus Macaque Indian, RMC Rhesus Macaque Chinese, CMM Cynomolgus Macaque Mauritian, CMC Cynomolgus Macaque Chinese, BAB Olive Baboon, SMY Sooty Mangabey); New World monkeys (MST common Marmoset, SQM Squirrel Monkey, OWL Owl Monkey); and Lemurs (MLM Mouse Lemur, RTL Ring-Tailed Lemur).
- The level for significantly expressed genes is color coded in 8 equal sized bins (light to dark green). Light gray is for weak not-accurately measured expression (2 to 8 reads above intergenic background); dark gray for no expression or no sequence conservation (0 read in gene). The plot to the right shows the distribution of measured expression values in all tissues for all genes (blue) and for this gene (green), in Magic index = log2(1000 sFPKM).
You may also examine the strand-specific genome coverage plots on the experimental AceView/Magic hub at UCSC, by tissue or by species. Tracks may be slow to load; please reload if some tracks come up yellow-greenish, and thanks to UCSC for the great work!.
Read more...
          Complete gene on genome diagram: back to top
Please choose between the zoomable GIF version., and the HTML5/SVG version.
This diagram shows in true scale the gene on the genome, the mRNAs and the cDNA clones.
Compact gene diagram back to top
Gene CNOT8 5' 3' encoded on plus strand of chromosome 5 from 154,237,513 to 154,256,360 3941 8392 114647 97341 a 2711 88456 97941 94594 114647 97341 b 10995 88456 97941 94594 114647 97341 c [NM] 39508 88456 97941 94594 114647 97341 d 39508 88456 97941 94594 114647 97341 e 3941 97941 94594 114647 97341 f 39508 88456 8392 114647 97341 g 267 88456 8392 114647 97341 h 291 97941 94594 i 3941 97941 94594 j 3941 1112 2209 94594 114647 97341 k 10995 1948 94594 114647 97341 l 1412 94594 114647 97341 m 1411 97941 94594 114647 97341 n 1 18 o vm-u 94594 114647 vb 344 94594 114647 p 1412 94594 q 39508 88456 97941 r 1412 94594 114647 s 85 t vf-u 3941 8392 114647 97341 u vk-u 186 88456 1112 va 10995 88456 8392 vc 114 1258 88456 vd 10995 88456 1112 2209 94594 114647 97341 ve 173 88456 vi vl-u vg-u 119 534 88456 vh 58 88456 vj 1 2kb 0 508 bp exon 508 bp exon 113 bp [gc-ag] intron 25 GenBank accessions 4712 RNA-seq supporting reads 552 UHR pooled cells 291 Brain 229 Blood 3631 Neuroblastoma 9 Other (also 109 Primates bodymap) 130 bp exon 6423 bp [gt-ag] intron 29 GenBank accessions 3912 RNA-seq supporting reads 312 UHR pooled cells 390 Brain 442 Blood 2764 Neuroblastoma 4 Other (also 354 Primates bodymap) 194 bp exon 6344 bp [gt-ag] intron 25 GenBank accessions 8367 RNA-seq supporting reads 814 UHR pooled cells 1078 Brain 740 Blood 5683 Neuroblastoma 52 Other (also 512 Primates bodymap) 145 bp exon 666 bp [gt-ag] intron 88 GenBank accessions 114559 RNA-seq supporting reads 15376 UHR pooled cells 10271 Brain 14856 Blood 73523 Neuroblastoma 533 Other (also 10546 Primates bodymap) 111 bp exon 2638 bp [gt-ag] intron 68 GenBank accessions 97273 RNA-seq supporting reads 12538 UHR pooled cells 8140 Brain 14345 Blood 61797 Neuroblastoma 453 Other (also 7071 Primates bodymap) 1503 bp exon 11 accessions, some from neuroblastoma (seen 3 times) brain (2), amygdala (once) eye (once), fetal eyes (once) Validated 3' end, 1 accession 1503 bp exon 262 bp exon 4405 bp [gt-ag] intron 6 GenBank accessions 2705 RNA-seq supporting reads 266 UHR pooled cells 188 Brain 197 Blood 2052 Neuroblastoma 2 Other (also 58 Primates bodymap) 189 bp exon 189 bp exon 1796 bp [gt-ag] intron 175 GenBank accessions 88281 RNA-seq supporting reads 12002 UHR pooled cells 7991 Brain 13348 Blood 54566 Neuroblastoma 374 Other (also 9777 Primates bodymap) 194 bp exon 5275 bp [gt-ag] intron 137 GenBank accessions 97804 RNA-seq supporting reads 14237 UHR pooled cells 9194 Brain 12333 Blood 61696 Neuroblastoma 344 Other (also 10266 Primates bodymap) 162 bp exon 907 bp [gt-ag] intron 93 GenBank accessions 94501 RNA-seq supporting reads 12512 UHR pooled cells 7901 Brain 12041 Blood 61593 Neuroblastoma 454 Other (also 6885 Primates bodymap) 145 bp exon 666 bp [gt-ag] intron 88 GenBank accessions 114559 RNA-seq supporting reads 15376 UHR pooled cells 10271 Brain 14856 Blood 73523 Neuroblastoma 533 Other (also 10546 Primates bodymap) 111 bp exon 2638 bp [gt-ag] intron 68 GenBank accessions 97273 RNA-seq supporting reads 12538 UHR pooled cells 8140 Brain 14345 Blood 61797 Neuroblastoma 453 Other (also 7071 Primates bodymap) 1502 bp exon 6 accessions, some from placenta (seen 3 times) pre-eclamptic placenta (3) brain (once), thalamus (once) 1502 bp exon 194 bp exon 194 bp exon 57 bp uORF 4390 bp [gt-ag] intron 38 GenBank accessions 10957 RNA-seq supporting reads 1035 UHR pooled cells 793 Brain 1012 Blood 8078 Neuroblastoma 39 Other (also 311 Primates bodymap) 57 bp uORF 189 bp exon 189 bp exon 189 bp exon 1796 bp [gt-ag] intron 175 GenBank accessions 88281 RNA-seq supporting reads 12002 UHR pooled cells 7991 Brain 13348 Blood 54566 Neuroblastoma 374 Other (also 9777 Primates bodymap) 194 bp exon 194 bp exon 5275 bp [gt-ag] intron 137 GenBank accessions 97804 RNA-seq supporting reads 14237 UHR pooled cells 9194 Brain 12333 Blood 61696 Neuroblastoma 344 Other (also 10266 Primates bodymap) 162 bp exon 162 bp exon 907 bp [gt-ag] intron 93 GenBank accessions 94501 RNA-seq supporting reads 12512 UHR pooled cells 7901 Brain 12041 Blood 61593 Neuroblastoma 454 Other (also 6885 Primates bodymap) 145 bp exon 145 bp exon 666 bp [gt-ag] intron 88 GenBank accessions 114559 RNA-seq supporting reads 15376 UHR pooled cells 10271 Brain 14856 Blood 73523 Neuroblastoma 533 Other (also 10546 Primates bodymap) 111 bp exon 111 bp exon 2638 bp [gt-ag] intron 68 GenBank accessions 97273 RNA-seq supporting reads 12538 UHR pooled cells 8140 Brain 14345 Blood 61797 Neuroblastoma 453 Other (also 7071 Primates bodymap) 1502 bp exon 1502 bp exon 26 accessions, NM_004779.4 some from brain (seen 6 times) thymus (2), adenocarcinoma (once) amygdala (once), human embryonic stem cells differentiated toan early endodermal cell type (once) capped 5' end, 12 accessions Validated 3' end, 3 accessions 1502 bp exon 254 bp exon 4438 bp [gt-ag] intron 127 GenBank accessions 39381 RNA-seq supporting reads 5002 UHR pooled cells 3632 Brain 2945 Blood 27705 Neuroblastoma 97 Other (also 2445 Primates bodymap) 189 bp exon 189 bp exon 1796 bp [gt-ag] intron 175 GenBank accessions 88281 RNA-seq supporting reads 12002 UHR pooled cells 7991 Brain 13348 Blood 54566 Neuroblastoma 374 Other (also 9777 Primates bodymap) 194 bp exon 5275 bp [gt-ag] intron 137 GenBank accessions 97804 RNA-seq supporting reads 14237 UHR pooled cells 9194 Brain 12333 Blood 61696 Neuroblastoma 344 Other (also 10266 Primates bodymap) 162 bp exon 907 bp [gt-ag] intron 93 GenBank accessions 94501 RNA-seq supporting reads 12512 UHR pooled cells 7901 Brain 12041 Blood 61593 Neuroblastoma 454 Other (also 6885 Primates bodymap) 145 bp exon 666 bp [gt-ag] intron 88 GenBank accessions 114559 RNA-seq supporting reads 15376 UHR pooled cells 10271 Brain 14856 Blood 73523 Neuroblastoma 533 Other (also 10546 Primates bodymap) 111 bp exon 2638 bp [gt-ag] intron 68 GenBank accessions 97273 RNA-seq supporting reads 12538 UHR pooled cells 8140 Brain 14345 Blood 61797 Neuroblastoma 453 Other (also 7071 Primates bodymap) 1502 bp exon 48 accessions, some from brain (seen 15 times) hippocampus (5), thymus (3) adrenal gland (2), colon (2) capped 5' end, 24 accessions Validated 3' end, 1 accession Validated 3' end, 2 accessions 1502 bp exon 573 bp exon 573 bp exon 33 bp uORF 573 bp exon 113 bp [gc-ag] intron 25 GenBank accessions 4712 RNA-seq supporting reads 552 UHR pooled cells 291 Brain 229 Blood 3631 Neuroblastoma 9 Other (also 109 Primates bodymap) 130 bp exon 130 bp exon 4438 bp [gt-ag] intron 127 GenBank accessions 39381 RNA-seq supporting reads 5002 UHR pooled cells 3632 Brain 2945 Blood 27705 Neuroblastoma 97 Other (also 2445 Primates bodymap) 189 bp exon 189 bp exon 189 bp exon 1796 bp [gt-ag] intron 175 GenBank accessions 88281 RNA-seq supporting reads 12002 UHR pooled cells 7991 Brain 13348 Blood 54566 Neuroblastoma 374 Other (also 9777 Primates bodymap) 194 bp exon 194 bp exon 5275 bp [gt-ag] intron 137 GenBank accessions 97804 RNA-seq supporting reads 14237 UHR pooled cells 9194 Brain 12333 Blood 61696 Neuroblastoma 344 Other (also 10266 Primates bodymap) 162 bp exon 162 bp exon 907 bp [gt-ag] intron 93 GenBank accessions 94501 RNA-seq supporting reads 12512 UHR pooled cells 7901 Brain 12041 Blood 61593 Neuroblastoma 454 Other (also 6885 Primates bodymap) 145 bp exon 145 bp exon 666 bp [gt-ag] intron 88 GenBank accessions 114559 RNA-seq supporting reads 15376 UHR pooled cells 10271 Brain 14856 Blood 73523 Neuroblastoma 533 Other (also 10546 Primates bodymap) 111 bp exon 111 bp exon 2638 bp [gt-ag] intron 68 GenBank accessions 97273 RNA-seq supporting reads 12538 UHR pooled cells 8140 Brain 14345 Blood 61797 Neuroblastoma 453 Other (also 7071 Primates bodymap) 1507 bp exon 1507 bp exon 171 accessions, some from lung (seen 14 times) brain (9), uterus (8) hippocampus (7), chondrosarcoma (6) capped 5' end, 25 accessions Validated 3' end, 6 accessions Validated 3' end, 38 accessions 1507 bp exon 204 bp exon 204 bp exon 6423 bp [gt-ag] intron 29 GenBank accessions 3912 RNA-seq supporting reads 312 UHR pooled cells 390 Brain 442 Blood 2764 Neuroblastoma 4 Other (also 354 Primates bodymap) 194 bp exon 5275 bp [gt-ag] intron 137 GenBank accessions 97804 RNA-seq supporting reads 14237 UHR pooled cells 9194 Brain 12333 Blood 61696 Neuroblastoma 344 Other (also 10266 Primates bodymap) 162 bp exon 907 bp [gt-ag] intron 93 GenBank accessions 94501 RNA-seq supporting reads 12512 UHR pooled cells 7901 Brain 12041 Blood 61593 Neuroblastoma 454 Other (also 6885 Primates bodymap) 145 bp exon 666 bp [gt-ag] intron 88 GenBank accessions 114559 RNA-seq supporting reads 15376 UHR pooled cells 10271 Brain 14856 Blood 73523 Neuroblastoma 533 Other (also 10546 Primates bodymap) 111 bp exon 2638 bp [gt-ag] intron 68 GenBank accessions 97273 RNA-seq supporting reads 12538 UHR pooled cells 8140 Brain 14345 Blood 61797 Neuroblastoma 453 Other (also 7071 Primates bodymap) 183 bp exon 13 accessions, some from brain (seen 4 times) amygdala (once), kidney (once) leiomyosarcoma (once) t-lymphocytes (once) 183 bp exon 126 bp exon 4438 bp [gt-ag] intron 127 GenBank accessions 39381 RNA-seq supporting reads 5002 UHR pooled cells 3632 Brain 2945 Blood 27705 Neuroblastoma 97 Other (also 2445 Primates bodymap) 189 bp exon 189 bp exon 1796 bp [gt-ag] intron 175 GenBank accessions 88281 RNA-seq supporting reads 12002 UHR pooled cells 7991 Brain 13348 Blood 54566 Neuroblastoma 374 Other (also 9777 Primates bodymap) 194 bp exon 6344 bp [gt-ag] intron 25 GenBank accessions 8367 RNA-seq supporting reads 814 UHR pooled cells 1078 Brain 740 Blood 5683 Neuroblastoma 52 Other (also 512 Primates bodymap) 145 bp exon 666 bp [gt-ag] intron 88 GenBank accessions 114559 RNA-seq supporting reads 15376 UHR pooled cells 10271 Brain 14856 Blood 73523 Neuroblastoma 533 Other (also 10546 Primates bodymap) 111 bp exon 2638 bp [gt-ag] intron 68 GenBank accessions 97273 RNA-seq supporting reads 12538 UHR pooled cells 8140 Brain 14345 Blood 61797 Neuroblastoma 453 Other (also 7071 Primates bodymap) 189 bp exon 9 accessions, some from brain (seen 2 times) liver, tumor tissue (2) breast (once), cerebrum (once) mammary adenocarcinoma cell line (once) 189 bp exon 168 bp exon 4373 bp [gt-ag] intron 3 GenBank accessions 264 RNA-seq supporting reads 41 UHR pooled cells 7 Brain 15 Blood 198 Neuroblastoma 3 Other (also 5 Primates bodymap) 189 bp exon 189 bp exon 1796 bp [gt-ag] intron 175 GenBank accessions 88281 RNA-seq supporting reads 12002 UHR pooled cells 7991 Brain 13348 Blood 54566 Neuroblastoma 374 Other (also 9777 Primates bodymap) 194 bp exon 6344 bp [gt-ag] intron 25 GenBank accessions 8367 RNA-seq supporting reads 814 UHR pooled cells 1078 Brain 740 Blood 5683 Neuroblastoma 52 Other (also 512 Primates bodymap) 145 bp exon 666 bp [gt-ag] intron 88 GenBank accessions 114559 RNA-seq supporting reads 15376 UHR pooled cells 10271 Brain 14856 Blood 73523 Neuroblastoma 533 Other (also 10546 Primates bodymap) 111 bp exon 2638 bp [gt-ag] intron 68 GenBank accessions 97273 RNA-seq supporting reads 12538 UHR pooled cells 8140 Brain 14345 Blood 61797 Neuroblastoma 453 Other (also 7071 Primates bodymap) 109 bp exon 3 accessions, some from leukocyte (seen once) prostate (once) 109 bp exon 27 bp exon 27 bp exon 95 bp [gt-ag] intron 10 GenBank accessions 352 RNA-seq supporting reads 46 UHR pooled cells 13 Brain 70 Blood 223 Neuroblastoma (also 20 Primates bodymap) 163 bp exon 6390 bp [gt-ag] intron 3 GenBank accessions 288 RNA-seq supporting reads 19 UHR pooled cells 27 Brain 14 Blood 228 Neuroblastoma (also 8 Primates bodymap) 194 bp exon 5275 bp [gt-ag] intron 137 GenBank accessions 97804 RNA-seq supporting reads 14237 UHR pooled cells 9194 Brain 12333 Blood 61696 Neuroblastoma 344 Other (also 10266 Primates bodymap) 162 bp exon 907 bp [gt-ag] intron 93 GenBank accessions 94501 RNA-seq supporting reads 12512 UHR pooled cells 7901 Brain 12041 Blood 61593 Neuroblastoma 454 Other (also 6885 Primates bodymap) 102 bp exon 3 accessions, some from brain (seen once) eye (once), retina (once) 102 bp exon 19 bp exon 19 bp exon 113 bp [gc-ag] intron 25 GenBank accessions 4712 RNA-seq supporting reads 552 UHR pooled cells 291 Brain 229 Blood 3631 Neuroblastoma 9 Other (also 109 Primates bodymap) 130 bp exon 6423 bp [gt-ag] intron 29 GenBank accessions 3912 RNA-seq supporting reads 312 UHR pooled cells 390 Brain 442 Blood 2764 Neuroblastoma 4 Other (also 354 Primates bodymap) 194 bp exon 5275 bp [gt-ag] intron 137 GenBank accessions 97804 RNA-seq supporting reads 14237 UHR pooled cells 9194 Brain 12333 Blood 61696 Neuroblastoma 344 Other (also 10266 Primates bodymap) 162 bp exon 907 bp [gt-ag] intron 93 GenBank accessions 94501 RNA-seq supporting reads 12512 UHR pooled cells 7901 Brain 12041 Blood 61593 Neuroblastoma 454 Other (also 6885 Primates bodymap) 72 bp exon 1 accession from amygdala 72 bp exon 142 bp exon 6423 bp [gt-ag] intron 29 GenBank accessions 3912 RNA-seq supporting reads 312 UHR pooled cells 390 Brain 442 Blood 2764 Neuroblastoma 4 Other (also 354 Primates bodymap) 194 bp exon 2306 bp [gt-ag] intron 7 GenBank accessions 1105 RNA-seq supporting reads 96 UHR pooled cells 45 Brain 94 Blood 867 Neuroblastoma 3 Other (also 36 Primates bodymap) 101 bp exon 2868 bp [gt-ag] intron 6 GenBank accessions 2203 RNA-seq supporting reads 268 UHR pooled cells 48 Brain 270 Blood 1615 Neuroblastoma 2 Other (also 110 Primates bodymap) 162 bp exon 162 bp exon 907 bp [gt-ag] intron 93 GenBank accessions 94501 RNA-seq supporting reads 12512 UHR pooled cells 7901 Brain 12041 Blood 61593 Neuroblastoma 454 Other (also 6885 Primates bodymap) 145 bp exon 666 bp [gt-ag] intron 88 GenBank accessions 114559 RNA-seq supporting reads 15376 UHR pooled cells 10271 Brain 14856 Blood 73523 Neuroblastoma 533 Other (also 10546 Primates bodymap) 111 bp exon 2638 bp [gt-ag] intron 68 GenBank accessions 97273 RNA-seq supporting reads 12538 UHR pooled cells 8140 Brain 14345 Blood 61797 Neuroblastoma 453 Other (also 7071 Primates bodymap) 296 bp exon 5 accessions, some from embryonal carcinoma cell line (seen once) testis (once) 296 bp exon 273 bp exon 113 bp [gc-ag] intron 25 GenBank accessions 4712 RNA-seq supporting reads 552 UHR pooled cells 291 Brain 229 Blood 3631 Neuroblastoma 9 Other (also 109 Primates bodymap) 178 bp exon 4390 bp [gt-ag] intron 38 GenBank accessions 10957 RNA-seq supporting reads 1035 UHR pooled cells 793 Brain 1012 Blood 8078 Neuroblastoma 39 Other (also 311 Primates bodymap) 189 bp exon 7265 bp [gt-ag] intron 2 GenBank accessions 1946 RNA-seq supporting reads 135 UHR pooled cells 159 Brain 63 Blood 1586 Neuroblastoma 3 Other (also 25 Primates bodymap) 162 bp exon 162 bp exon 907 bp [gt-ag] intron 93 GenBank accessions 94501 RNA-seq supporting reads 12512 UHR pooled cells 7901 Brain 12041 Blood 61593 Neuroblastoma 454 Other (also 6885 Primates bodymap) 145 bp exon 666 bp [gt-ag] intron 88 GenBank accessions 114559 RNA-seq supporting reads 15376 UHR pooled cells 10271 Brain 14856 Blood 73523 Neuroblastoma 533 Other (also 10546 Primates bodymap) 111 bp exon 2638 bp [gt-ag] intron 68 GenBank accessions 97273 RNA-seq supporting reads 12538 UHR pooled cells 8140 Brain 14345 Blood 61797 Neuroblastoma 453 Other (also 7071 Primates bodymap) 298 bp exon 4 accessions, some from brain (seen 2 times) embryonal carcinoma, cell line (once) heart (once), testis (once) 298 bp exon 27 bp exon 95 bp [gt-ag] intron 10 GenBank accessions 352 RNA-seq supporting reads 46 UHR pooled cells 13 Brain 70 Blood 223 Neuroblastoma (also 20 Primates bodymap) 130 bp exon 11892 bp [gt-ag] intron 11 GenBank accessions 1401 RNA-seq supporting reads 135 UHR pooled cells 153 Brain 74 Blood 1037 Neuroblastoma 2 Other (also 59 Primates bodymap) 162 bp exon 162 bp exon 907 bp [gt-ag] intron 93 GenBank accessions 94501 RNA-seq supporting reads 12512 UHR pooled cells 7901 Brain 12041 Blood 61593 Neuroblastoma 454 Other (also 6885 Primates bodymap) 145 bp exon 666 bp [gt-ag] intron 88 GenBank accessions 114559 RNA-seq supporting reads 15376 UHR pooled cells 10271 Brain 14856 Blood 73523 Neuroblastoma 533 Other (also 10546 Primates bodymap) 111 bp exon 2638 bp [gt-ag] intron 68 GenBank accessions 97273 RNA-seq supporting reads 12538 UHR pooled cells 8140 Brain 14345 Blood 61797 Neuroblastoma 453 Other (also 7071 Primates bodymap) 583 bp exon 9 accessions, some from amygdala (seen 2 times) bone marrow (once), esophageal tumor tissue (once), eye (once) thymus (once) 583 bp exon 233 bp exon 6375 bp [gt-ag] intron 5 GenBank accessions 1406 RNA-seq supporting reads 95 UHR pooled cells 117 Brain 135 Blood 1053 Neuroblastoma 6 Other (also 70 Primates bodymap) 194 bp exon 5275 bp [gt-ag] intron 137 GenBank accessions 97804 RNA-seq supporting reads 14237 UHR pooled cells 9194 Brain 12333 Blood 61696 Neuroblastoma 344 Other (also 10266 Primates bodymap) 162 bp exon 162 bp exon 907 bp [gt-ag] intron 93 GenBank accessions 94501 RNA-seq supporting reads 12512 UHR pooled cells 7901 Brain 12041 Blood 61593 Neuroblastoma 454 Other (also 6885 Primates bodymap) 145 bp exon 666 bp [gt-ag] intron 88 GenBank accessions 114559 RNA-seq supporting reads 15376 UHR pooled cells 10271 Brain 14856 Blood 73523 Neuroblastoma 533 Other (also 10546 Primates bodymap) 111 bp exon 2638 bp [gt-ag] intron 68 GenBank accessions 97273 RNA-seq supporting reads 12538 UHR pooled cells 8140 Brain 14345 Blood 61797 Neuroblastoma 453 Other (also 7071 Primates bodymap) 5 accessions, some from bone marrow (seen once) brain (once), embryonal carcinoma cell line (once), testis (once) 90 bp exon 306 bp exon 306 bp exon 879 bp [gc-ag] intron 1 GenBank accession 92 bp exon 198 bp [gt-ag] intron 1 GenBank accession 17 RNA-seq supporting reads 1 UHR pooled cells 8 Blood 8 Neuroblastoma 249 bp exon 2 accessions, some from brain (seen once) marrow (once) capped 5' end, 1 accession 249 bp exon 336 bp exon 336 bp exon 0 accession 336 bp exon 379 bp exon 379 bp exon 42 bp uORF 379 bp exon 379 bp exon 907 bp [gt-ag] intron 93 GenBank accessions 94501 RNA-seq supporting reads 12512 UHR pooled cells 7901 Brain 12041 Blood 61593 Neuroblastoma 454 Other (also 6885 Primates bodymap) 145 bp exon 145 bp exon 666 bp [gt-ag] intron 88 GenBank accessions 114559 RNA-seq supporting reads 15376 UHR pooled cells 10271 Brain 14856 Blood 73523 Neuroblastoma 533 Other (also 10546 Primates bodymap) 42 bp exon 1 accession from pericardium 42 bp exon 157 bp exon 11844 bp [gt-ag] intron 2 GenBank accessions 342 RNA-seq supporting reads 29 UHR pooled cells 32 Brain 10 Blood 270 Neuroblastoma 1 Other (also 3 Primates bodymap) 162 bp exon 162 bp exon 907 bp [gt-ag] intron 93 GenBank accessions 94501 RNA-seq supporting reads 12512 UHR pooled cells 7901 Brain 12041 Blood 61593 Neuroblastoma 454 Other (also 6885 Primates bodymap) 145 bp exon 666 bp [gt-ag] intron 88 GenBank accessions 114559 RNA-seq supporting reads 15376 UHR pooled cells 10271 Brain 14856 Blood 73523 Neuroblastoma 533 Other (also 10546 Primates bodymap) 2 accessions, some from brain (seen once) kidney (once) 111 bp exon 145 bp exon 11892 bp [gt-ag] intron 11 GenBank accessions 1401 RNA-seq supporting reads 135 UHR pooled cells 153 Brain 74 Blood 1037 Neuroblastoma 2 Other (also 59 Primates bodymap) 162 bp exon 162 bp exon 907 bp [gt-ag] intron 93 GenBank accessions 94501 RNA-seq supporting reads 12512 UHR pooled cells 7901 Brain 12041 Blood 61593 Neuroblastoma 454 Other (also 6885 Primates bodymap) 257 bp exon 2 accessions, some from head neck (seen once) 257 bp exon 291 bp exon 95 bp [gt-ag] intron 10 GenBank accessions 352 RNA-seq supporting reads 46 UHR pooled cells 13 Brain 70 Blood 223 Neuroblastoma (also 20 Primates bodymap) 130 bp exon 4438 bp [gt-ag] intron 127 GenBank accessions 39381 RNA-seq supporting reads 5002 UHR pooled cells 3632 Brain 2945 Blood 27705 Neuroblastoma 97 Other (also 2445 Primates bodymap) 189 bp exon 189 bp exon 1796 bp [gt-ag] intron 175 GenBank accessions 88281 RNA-seq supporting reads 12002 UHR pooled cells 7991 Brain 13348 Blood 54566 Neuroblastoma 374 Other (also 9777 Primates bodymap) 194 bp exon 5275 bp [gt-ag] intron 137 GenBank accessions 97804 RNA-seq supporting reads 14237 UHR pooled cells 9194 Brain 12333 Blood 61696 Neuroblastoma 344 Other (also 10266 Primates bodymap) 161 bp exon 21 accessions, some from brain (seen 6 times) bone marrow (2), adenocarcinoma cell line (once), breast tumor tissue (once), colon (once) 161 bp exon 28 bp exon 113 bp [gc-ag] intron 25 GenBank accessions 4712 RNA-seq supporting reads 552 UHR pooled cells 291 Brain 229 Blood 3631 Neuroblastoma 9 Other (also 109 Primates bodymap) 130 bp exon 11892 bp [gt-ag] intron 11 GenBank accessions 1401 RNA-seq supporting reads 135 UHR pooled cells 153 Brain 74 Blood 1037 Neuroblastoma 2 Other (also 59 Primates bodymap) 162 bp exon 162 bp exon 907 bp [gt-ag] intron 93 GenBank accessions 94501 RNA-seq supporting reads 12512 UHR pooled cells 7901 Brain 12041 Blood 61593 Neuroblastoma 454 Other (also 6885 Primates bodymap) 145 bp exon 666 bp [gt-ag] intron 88 GenBank accessions 114559 RNA-seq supporting reads 15376 UHR pooled cells 10271 Brain 14856 Blood 73523 Neuroblastoma 533 Other (also 10546 Primates bodymap) 95 bp exon 1 accession from caudate nucleus 95 bp exon 284 bp exon 284 bp exon 113 bp [gc-ag] intron 25 GenBank accessions 4712 RNA-seq supporting reads 552 UHR pooled cells 291 Brain 229 Blood 3631 Neuroblastoma 9 Other (also 109 Primates bodymap) 178 bp exon 178 bp exon 536 bp [gt-ag] intron 1 GenBank accession 84 RNA-seq supporting reads 12 UHR pooled cells 4 Brain 25 Blood 43 Neuroblastoma 1 accession capped 5' end, 1 accession 87 bp exon 1117 bp exon 1117 bp exon 3 accessions, some from embryonic stem cells (seen once) head neck (once), spleen (once) 1117 bp exon 229 bp exon 6423 bp [gt-ag] intron 29 GenBank accessions 3912 RNA-seq supporting reads 312 UHR pooled cells 390 Brain 442 Blood 2764 Neuroblastoma 4 Other (also 354 Primates bodymap) 194 bp exon 6344 bp [gt-ag] intron 25 GenBank accessions 8367 RNA-seq supporting reads 814 UHR pooled cells 1078 Brain 740 Blood 5683 Neuroblastoma 52 Other (also 512 Primates bodymap) 145 bp exon 145 bp exon 666 bp [gt-ag] intron 88 GenBank accessions 114559 RNA-seq supporting reads 15376 UHR pooled cells 10271 Brain 14856 Blood 73523 Neuroblastoma 533 Other (also 10546 Primates bodymap) 111 bp exon 2638 bp [gt-ag] intron 68 GenBank accessions 97273 RNA-seq supporting reads 12538 UHR pooled cells 8140 Brain 14345 Blood 61797 Neuroblastoma 453 Other (also 7071 Primates bodymap) 224 bp exon 4 accessions, some from hippocampus (seen 3 times) amygdala (once) capped 5' end, 3 accessions 224 bp exon 446 bp exon 2 accessions, some from colon (seen 2 times) colon tumor, RER+ (2) 446 bp exon 170 bp exon 170 bp exon 30 bp uORF 170 bp exon 3369 bp [gt-ag] intron 1 GenBank accession 185 RNA-seq supporting reads 27 UHR pooled cells 20 Brain 52 Blood 86 Neuroblastoma (also 7 Primates bodymap) 189 bp exon 189 bp exon 189 bp exon 1796 bp [gt-ag] intron 175 GenBank accessions 88281 RNA-seq supporting reads 12002 UHR pooled cells 7991 Brain 13348 Blood 54566 Neuroblastoma 374 Other (also 9777 Primates bodymap) 194 bp exon 194 bp exon 2306 bp [gt-ag] intron 7 GenBank accessions 1105 RNA-seq supporting reads 96 UHR pooled cells 45 Brain 94 Blood 867 Neuroblastoma 3 Other (also 36 Primates bodymap) 38 bp exon 38 bp exon 1 accession from hippocampus capped 5' end, 1 accession 38 bp exon 300 bp exon 300 bp exon 57 bp uORF 4390 bp [gt-ag] intron 38 GenBank accessions 10957 RNA-seq supporting reads 1035 UHR pooled cells 793 Brain 1012 Blood 8078 Neuroblastoma 39 Other (also 311 Primates bodymap) 57 bp uORF 189 bp exon 189 bp exon 189 bp exon 1796 bp [gt-ag] intron 175 GenBank accessions 88281 RNA-seq supporting reads 12002 UHR pooled cells 7991 Brain 13348 Blood 54566 Neuroblastoma 374 Other (also 9777 Primates bodymap) 194 bp exon 194 bp exon 6344 bp [gt-ag] intron 25 GenBank accessions 8367 RNA-seq supporting reads 814 UHR pooled cells 1078 Brain 740 Blood 5683 Neuroblastoma 52 Other (also 512 Primates bodymap) 22 bp exon 7 accessions, some from spleen (seen 2 times) brain (once), kidney tumor tissue (once), trachea (once) 22 bp exon 130 bp exon 130 bp exon 584 bp [gt-ag] intron 1 GenBank accession 113 RNA-seq supporting reads 16 UHR pooled cells 5 Brain 42 Blood 50 Neuroblastoma 144 bp exon 3710 bp [gt-ag] intron 1 GenBank accession 1257 RNA-seq supporting reads 262 UHR pooled cells 73 Brain 413 Blood 505 Neuroblastoma 4 Other (also 132 Primates bodymap) 189 bp exon 189 bp exon 1796 bp [gt-ag] intron 175 GenBank accessions 88281 RNA-seq supporting reads 12002 UHR pooled cells 7991 Brain 13348 Blood 54566 Neuroblastoma 374 Other (also 9777 Primates bodymap) 1 accession 49 bp exon 128 bp exon 4390 bp [gt-ag] intron 38 GenBank accessions 10957 RNA-seq supporting reads 1035 UHR pooled cells 793 Brain 1012 Blood 8078 Neuroblastoma 39 Other (also 311 Primates bodymap) 189 bp exon 1796 bp [gt-ag] intron 175 GenBank accessions 88281 RNA-seq supporting reads 12002 UHR pooled cells 7991 Brain 13348 Blood 54566 Neuroblastoma 374 Other (also 9777 Primates bodymap) 194 bp exon 2306 bp [gt-ag] intron 7 GenBank accessions 1105 RNA-seq supporting reads 96 UHR pooled cells 45 Brain 94 Blood 867 Neuroblastoma 3 Other (also 36 Primates bodymap) 101 bp exon 2868 bp [gt-ag] intron 6 GenBank accessions 2203 RNA-seq supporting reads 268 UHR pooled cells 48 Brain 270 Blood 1615 Neuroblastoma 2 Other (also 110 Primates bodymap) 162 bp exon 162 bp exon 907 bp [gt-ag] intron 93 GenBank accessions 94501 RNA-seq supporting reads 12512 UHR pooled cells 7901 Brain 12041 Blood 61593 Neuroblastoma 454 Other (also 6885 Primates bodymap) 145 bp exon 666 bp [gt-ag] intron 88 GenBank accessions 114559 RNA-seq supporting reads 15376 UHR pooled cells 10271 Brain 14856 Blood 73523 Neuroblastoma 533 Other (also 10546 Primates bodymap) 111 bp exon 2638 bp [gt-ag] intron 68 GenBank accessions 97273 RNA-seq supporting reads 12538 UHR pooled cells 8140 Brain 14345 Blood 61797 Neuroblastoma 453 Other (also 7071 Primates bodymap) 1463 bp exon 1 accession from placenta cot 25-normalized 1463 bp exon 311 bp exon 311 bp exon 4681 bp [gc-ag] intron 1 GenBank accession 172 RNA-seq supporting reads 36 UHR pooled cells 3 Brain 2 Blood 131 Neuroblastoma (also 4 Primates bodymap) 189 bp exon 189 bp exon 1796 bp [gt-ag] intron 175 GenBank accessions 88281 RNA-seq supporting reads 12002 UHR pooled cells 7991 Brain 13348 Blood 54566 Neuroblastoma 374 Other (also 9777 Primates bodymap) 1 accession from liver 42 bp exon 348 bp exon 348 bp exon 1 accession from lung 348 bp exon 576 bp exon 576 bp exon 1 accession from thymus capped 5' end, 1 accession 576 bp exon 144 bp exon 926 bp [gt-ag] intron 1 GenBank accession 118 RNA-seq supporting reads 21 UHR pooled cells 4 Brain 6 Blood 86 Neuroblastoma 1 Other (also 2 Primates bodymap) 179 bp exon 3333 bp [gt-ag] intron 1 GenBank accession 533 RNA-seq supporting reads 63 UHR pooled cells 22 Brain 53 Blood 395 Neuroblastoma (also 9 Primates bodymap) 189 bp exon 189 bp exon 1796 bp [gt-ag] intron 175 GenBank accessions 88281 RNA-seq supporting reads 12002 UHR pooled cells 7991 Brain 13348 Blood 54566 Neuroblastoma 374 Other (also 9777 Primates bodymap) 50 bp exon 1 accession 50 bp exon 163 bp exon 4395 bp [gt-ag] intron 1 GenBank accession 57 RNA-seq supporting reads 4 UHR pooled cells 1 Brain 52 Neuroblastoma (also 1 Primates bodymap) 184 bp exon 184 bp exon 1796 bp [gt-ag] intron 175 GenBank accessions 88281 RNA-seq supporting reads 12002 UHR pooled cells 7991 Brain 13348 Blood 54566 Neuroblastoma 374 Other (also 9777 Primates bodymap) 1 accession from testis 153 bp exon Alternative mRNAs are shown aligned from 5' to 3' on a virtual genome where introns have been shrunk to a minimal length. Exon size is proportional to length, intron height reflects the number of cDNAs supporting each intron, the small numbers show the support of the introns in deep sequencing (with details in mouse-over) . Introns of the same color are identical, of different colors are different. 'Good proteins' are pink, partial or not-good proteins are yellow, uORFs are green. 5' cap or3' poly A flags show completeness of the transcript.
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Sequences: click on the numbers to get the DNA back to top
mRNA variant mRNA matching the genome Best predicted protein 5' UTR 3' UTR uORF Upstream sequence Transcription
unit
pre-mRNA		 Downstream sequence
aAug10 2591 bp 315 aa 290 bp 1353 bp 2kb possibly including promoter 18775 bp 1kb
bAug10 2565 bp 292 aa 334 bp 1352 bp 2kb probably including promoter 18252 bp 1kb
cAug10 2497 bp 292 aa 266 bp 1352 bp 54 bp 2kb including Promoter 18169 bp 1kb
dAug10 2557 bp 292 aa 326 bp 1352 bp 2kb including Promoter 18277 bp 1kb
eAug10 3011 bp 292 aa 775 bp 1357 bp 30 bp 2kb including Promoter 18844 bp 1kb
fAug10 999 bp 284 aa 111 bp 33 bp 2kb possibly including promoter 16908 bp 1kb
gAug10 954 bp 238 aa 198 bp 39 bp 2kb probably including promoter 16836 bp 1kb
hAug10 916 bp 225 aa 240 bp 2kb probably including promoter 16733 bp 1kb
iAug10 648 bp 215 aa 2kb probably including promoter 13315 bp 1kb
jAug10 577 bp 191 aa 2kb probably including promoter 13295 bp 1kb
kAug10 1151 bp 186 aa 444 bp 146 bp 2kb probably including promoter 16959 bp 1kb
lAug10 1356 bp 186 aa 647 bp 148 bp 2kb possibly including promoter 17335 bp 1kb
mAug10 1158 bp 186 aa 164 bp 433 bp 2kb probably including promoter 17356 bp 1kb
nAug10 935 bp 167 aa 434 bp 2kb possibly including promoter 16796 bp 1kb
oAug10 647 bp 159 aa 88 bp 79 bp 2kb including Promoter 1724 bp 1kb
pAug10 575 bp 137 aa 164 bp 2kb probably including promoter 13992 bp 1kb
qAug10 564 bp 135 aa 152 bp 4 bp 2kb probably including promoter 13363 bp 1kb
rAug10 965 bp 157 aa 493 bp 2kb possibly including promoter 12569 bp 1kb
sAug10 560 bp 131 aa 165 bp 2kb possibly including promoter 14138 bp 1kb
tAug10 549 bp 129 aa 66 bp 93 bp 2kb including Promoter 1198 bp 1kb
uAug10 903 bp 230 aa 442 bp 74 bp 2kb including Promoter 16974 bp 1kb
vaAug10 591 bp 116 aa 242 bp 27 bp 2kb including Promoter 8062 bp 1kb
vbAug10 566 bp 114 aa 224 bp 39 bp 2kb possibly including promoter 2139 bp 1kb
vcAug10 705 bp 111 aa 372 bp 54 bp 2kb probably including promoter 13235 bp 1kb
vdAug10 512 bp 101 aa 205 bp 2kb probably including promoter 6602 bp 1kb
veAug10 2493 bp 186 aa 619 bp 1313 bp 2kb possibly including promoter 18064 bp 1kb
vfAug10-unspliced 1117 bp 61 aa 421 bp 510 bp 2kb 1117 bp 1kb
vgAug10-unspliced 576 bp 37 aa 459 bp 2kb including Promoter 576 bp 1kb
vhAug10 562 bp 55 aa 395 bp 2kb probably including promoter 6617 bp 1kb
viAug10 542 bp 86 aa 93 bp 188 bp 2kb 7019 bp 1kb
vjAug10 500 bp 90 aa 230 bp 2kb probably including promoter 6691 bp 1kb
vkAug10-unspliced 446 bp 50 aa 293 bp 2kb 446 bp 1kb
vlAug10-unspliced 348 bp 9 aa 234 bp 84 bp 2kb 348 bp 1kb
vmAug10-unspliced 336 bp 41 aa 212 bp 2kb 336 bp 1kb

Gene neighbors and Navigator on chromosome 5q31-q33 back to top
C C SAP30L C I R P LARP1 C I R P CNOT8 D C I R P MRPL22 C R P KIF4B C P C R D C I P HAND1 R C R P C5orf4 C I R P GEMIN5 100kb 0 MFAP3andGALNT10, 461 accessions 24 variants tirera, 14 accessions mysherby, 1 accession SAP30L, 325 accessions 14 variants LARP1, 549 accessions 17 variants CNOT8, 369 accessions 34 variants MRPL22, 297 accessions 7 variants KIF4B, 23 accessions seysluby, 2 accessions sorsluby, 2 accessions tasluby, 3 accessions tysluby, 1 accession tusluby, 1 accession waswubu, 1 accession lasherby, 1 accession warswubu, 3 accessions tawsluby, 1 accession susneebu, 1 accession huhuyu, 2 accessions sawsneebu, 1 accession toysluby, 1 accession weyswubu, 1 accession varsluby, 1 accession vawsluby, 1 accession mosherby, 1 accession veysluby, 2 accessions vorsluby, 2 accessions voysluby, 2 accessions wysluby, 1 accession dawfler, 2 accessions deefler, 1 accession warsluby, 2 accessions wersluby, 3 accessions worsluby, 2 accessions bawjo, 1 accession varsneebu, 2 accessions zasluby, 1 accession zysluby, 1 accession zusluby, 1 accession zawsluby, 1 accession rineme, 1 accession zerswubu, 1 accession zeyswubu, 1 accession zeesluby, 3 accessions zersluby, 2 accessions zorsluby, 3 accessions zasteyby, 3 accessions deyfler, 6 accessions veesneebu, 2 accessions chosluby, 1 accession veysneebu, 1 accession zosteyby, 1 accession shasluby, 1 accession shysluby, 5 accessions zoyswubu, 3 accessions sheysluby, 1 accession spavubo, 1 accession morstyby, 1 accession cherswubu, 1 accession blawsluby, 1 accession chusteyby, 1 accession blorsluby, 1 accession bloysluby, 2 accessions flasluby, 1 accession fafler, 1 accession flarsluby, 1 accession shawswubu, 1 accession flersluby, 1 accession runeme, 2 accessions, 2 variants hehuyu, 1 accession pawsherby, 1 accession florsluby, 1 accession dofler, 2 accessions soysluby, 1 accession hihuyu, 1 accession tosluby, 1 accession wyswubu, 1 accession wuswubu, 2 accessions tarsluby, 1 accession teesluby, 1 accession tersluby, 1 accession snorvubo, 1 accession sysneebu, 1 accession darfler, 3 accessions sarsneebu, 1 accession vasluby, 1 accession vysluby, 1 accession vusluby, 1 accession vosluby, 1 accession worswubu, 1 accession versluby, 2 accessions wasluby, 1 accession zaswubu, 1 accession wusluby, 3 accessions tosneebu, 2 accessions zyswubu, 2 accessions tarsneebu, 1 accession farju, 1 accession wawsluby, 1 accession weesluby, 1 accession weysluby, 4 accessions woysluby, 3 accessions zosluby, 2 accessions flyfler, 4 accessions zarsluby, 1 accession bojo, 5 accessions zeysluby, 1 accession chysluby, 1 accession charsluby, 2 accessions cheesluby, 1 accession chersluby, 1 accession vorsneebu, 1 accession choysluby, 2 accessions chyswubu, 1 accession shawsluby, 1 accession shersluby, 1 accession choswubu, 1 accession zeesteyby, 1 accession snoyvubo, 1 accession nasherby, 2 accessions slerka, 1 accession neesherby, 1 accession blusluby, 1 accession nersherby, 1 accession metere, 10 accessions choyswubu, 1 accession spyvubo, 2 accessions bleesluby, 1 accession bleysluby, 1 accession flysluby, 1 accession flosluby, 1 accession flawsluby, 1 accession fleesluby, 1 accession sheeswubu, 3 accessions mutere, 21 accessions 5 variants HAND1, 58 accessions fuju, 5 accessions, 2 variants C5orf4, 436 accessions 24 variants GEMIN5, 249 accessions 11 variants ZOOM IN                D:disease,C:conserved,I:interactions,R:regulation,P:publications         Read more...
Annotated mRNA diagrams back to top
Bibliography:               11 articles in PubMed back to top
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p, .q, .r, .s, .t, .u, .va, .vb, .vc, .vd, .ve, .vf-u, .vg-u, .vh, .vi, .vj, .vk-u, .vl-u, .vm-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI

To mine knowledge about the gene, please click the 'Gene Summary' or the 'Function, regulation, related genes ' tab at the top of the page. The 'Gene Summary' page includes all we learnt about the gene, functional annotations of neighboring genes, maps, links to other sites and the bibliography. The 'Function, regulation, related genes ' page includes Diseases (D), Pathways, GO annotations, conserved domains (C), interactions (I) reference into function, and pointers to all genes with the same functional annotation.
To compare alternative variants, their summarized annotations, predicted proteins, introns and exons, or to access any sequence, click the 'Alternative mRNAs features' tab. To see a specific mRNA variant diagram, sequence and annotation, click the variant name in the 'mRNA' tab. To examine expression data from all cDNAs clustered in this gene by AceView, click the 'Expression tissue'.

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