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HomoloGene:56389. Gene conserved in Euteleostomi Download , Links
Genes
Genes identified as putative homologs of one another during the construction of HomoloGene.

Proteins
Proteins used in sequence comparisons and their conserved domain architectures.

COL11A1,  H.sapiens
collagen, type XI, alpha 1
NP_542196.2
1818 aa
COL11A1,  P.troglodytes
collagen, type XI, alpha 1
XP_001139974.1
1818 aa
LOC712753,  M.mulatta
collagen alpha-1(XI) chain-like
XP_002808276.1
1798 aa
COL11A1,  C.lupus
collagen, type XI, alpha 1
XP_005621909.1
1857 aa
COL11A1,  B.taurus
collagen, type XI, alpha 1
NP_001159981.1
1817 aa
Col11a1,  M.musculus
collagen, type XI, alpha 1
NP_031755.2
1804 aa
Col11a1,  R.norvegicus
collagen, type XI, alpha 1
NP_037249.1
1804 aa
COL11A1,  G.gallus
collagen, type XI, alpha 1
XP_001231624.2
1819 aa
col5a3,  X.tropicalis
collagen, type V, alpha 3
XP_004913770.1
1872 aa
col11a1a,  D.rerio
collagen, type XI, alpha 1a
NP_001077313.1
1736 aa


Protein Alignments
Protein multiple alignment, pairwise similarity scores and evolutionary distances.

Show Multiple Alignment

Show Pairwise Alignment Scores

Pairwise alignments generated using BLAST
Regenerate Alignments




Phenotypes
Phenotypic information for the genes in this entry imported from model organism databases.

H.sapiens
Marshall syndrome.
Stickler syndrome, type II.



Publications
Articles associated with genes and sequences of this homology group.

COL11A1 gene is associated with limbus vertebra in gymnasts.
Koyama K, et al. Int J Sports Med 33, 586-90 (2012).



Conserved Domains
Conserved Domains from CDD found in protein sequences by rpsblast searching.
COLFI (pfam01410)
  Fibrillar collagen C-terminal domain.
COLFI (cl02436)
  Fibrillar collagen C-terminal domain.
LamG (cl17353)
  Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
Collagen (cl19732)
  Collagen triple helix repeat (20 copies).



Related Homology Resources
Links to curated and computed homology information found in other databases.
Orthology group for M.musculus Col11a1 includes H.sapiens COL11A1 and R.norvegicus Col11a1.



UniGene
Links to UniGene entries found by comparing the homologous proteins against the transcript database.

Chordata
Mammalia - mammals (10 transcripts, 8 species)
Actinopterygii - bony fishes (7 transcripts, 4 species)
Amphibia - amphibians (3 transcripts, 1 species)
Amniota - vertebrates (1 transcript, 1 species)
Ascidiacea - tunicates (1 transcript, 1 species)

 

 

 

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