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HomoloGene:55433. Gene conserved in Tetrapoda Download , Links
Genes
Genes identified as putative homologs of one another during the construction of HomoloGene.

Proteins
Proteins used in sequence comparisons and their conserved domain architectures.

COL3A1,  H.sapiens
collagen, type III, alpha 1
NP_000081.1
1466 aa
COL3A1,  P.troglodytes
collagen, type III, alpha 1
XP_001163809.1
1466 aa
COL3A1,  M.mulatta
collagen, type III, alpha 1
XP_001105968.2
1466 aa
Col3a1,  M.musculus
collagen, type III, alpha 1
NP_034060.2
1464 aa
Col3a1,  R.norvegicus
collagen, type III, alpha 1
NP_114474.1
1463 aa
COL3A1,  G.gallus
collagen, type III, alpha 1
NP_990711.2
1460 aa
col3a1,  X.tropicalis
collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant)
NP_001136379.1
1468 aa


Protein Alignments
Protein multiple alignment, pairwise similarity scores and evolutionary distances.

Show Multiple Alignment

Show Pairwise Alignment Scores

Pairwise alignments generated using BLAST
Regenerate Alignments




Phenotypes
Phenotypic information for the genes in this entry imported from model organism databases.

H.sapiens
Aneurysm, familial arterial.
Ehlers-Danlos syndrome, type III.
Ehlers-Danlos syndrome, type IV.



Publications
Articles associated with genes and sequences of this homology group.




Conserved Domains
Conserved Domains from CDD found in protein sequences by rpsblast searching.
VWC (pfam00093)
  von Willebrand factor type C domain.
COLFI (cl02436)
  Fibrillar collagen C-terminal domain.
VWC (cl17735)
  von Willebrand factor type C domain.
Collagen (cl19732)
  Collagen triple helix repeat (20 copies).



Related Homology Resources
Links to curated and computed homology information found in other databases.
Orthology group for M.musculus Col3a1 includes H.sapiens COL3A1 and R.norvegicus Col3a1.



UniGene
Links to UniGene entries found by comparing the homologous proteins against the transcript database.

Chordata
Mammalia - mammals (23 transcripts, 14 species)
Amphibia - amphibians (4 transcripts, 2 species)
Aves - birds (3 transcripts, 2 species)
Amniota - vertebrates (2 transcripts, 1 species)

Cnidaria
Hydrozoa - hydrozoans (1 transcript, 1 species)
Anthozoa - anthozoans (1 transcript, 1 species)

Nematoda
Chromadorea - nematodes (1 transcript, 1 species)

Streptophyta
Eudicotyledons - eudicots (1 transcript, 1 species)

Oomycetes
Peronosporales - oomycetes (1 transcript, 1 species)

Apicomplexa
Coccidia - apicomplexans (1 transcript, 1 species)

 

 

 

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