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HomoloGene:88707. Gene conserved in Euteleostomi Download , Links
Genes
Genes identified as putative homologs of one another during the construction of HomoloGene.

Proteins
Proteins used in sequence comparisons and their conserved domain architectures.

YBX1,  H.sapiens
Y box binding protein 1
NP_004550.2
324 aa
YBX1,  P.troglodytes
Y box binding protein 1
XP_525693.3
324 aa
YBX1,  M.mulatta
Y box binding protein 1
XP_001088540.2
511 aa
LOC607025,  C.lupus
nuclease-sensitive element-binding protein 1-like
XP_848660.2
324 aa
YBX1,  B.taurus
Y box binding protein 1
NP_777240.1
324 aa
Ybx1,  M.musculus
Y box protein 1
NP_035862.2
322 aa
Ybx1,  R.norvegicus
Y box binding protein 1
NP_113751.3
322 aa
ybx1,  X.tropicalis
Y box binding protein 1
NP_001016677.1
306 aa
ybx1,  D.rerio
Y box binding protein 1
NP_571695.1
310 aa


Protein Alignments
Protein multiple alignment, pairwise similarity scores and evolutionary distances.

Show Multiple Alignment

Show Pairwise Alignment Scores

Pairwise alignments generated using BLAST
Regenerate Alignments




Publications
Articles associated with genes and sequences of this homology group.

Silencing the YB-1 gene inhibits cell migration in gastric cancer in vitro.
Guo TT, et al. Anat Rec (Hoboken) 296, 891-8 (2013).
YB-1: oncoprotein, prognostic marker and therapeutic target?
Lasham A, et al. Biochem J 449, 11-23 (2013).
YB-1 (YBX1) does not bind to Y/CCAAT boxes in vivo.
Dolfini D & Mantovani R. Oncogene 32, 4189-90 (2013).



Conserved Domains
Conserved Domains from CDD found in protein sequences by rpsblast searching.
S1_like (cl09927)
  S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. ...



Related Homology Resources
Links to curated and computed homology information found in other databases.
Orthology group for M.musculus Ybx1 includes H.sapiens YBX1 and R.norvegicus Ybx1.



UniGene
Links to UniGene entries found by comparing the homologous proteins against the transcript database.

Chordata
Mammalia - mammals (35 transcripts, 15 species)
Actinopterygii - bony fishes (16 transcripts, 12 species)
Amphibia - amphibians (13 transcripts, 2 species)
Aves - birds (3 transcripts, 3 species)
Ascidiacea - tunicates (2 transcripts, 2 species)
Cephalochordata - lancelets (1 transcript, 1 species)
Hyperoartia - vertebrates (1 transcript, 1 species)

Arthropoda
Insecta - insects (4 transcripts, 4 species)
Arachnida - arachnids (1 transcript, 1 species)
Malacostraca - crustaceans (1 transcript, 1 species)

Mollusca
Gastropoda - gastropods (3 transcripts, 2 species)

Cnidaria
Hydrozoa - hydrozoans (2 transcripts, 2 species)
Anthozoa - anthozoans (1 transcript, 1 species)

Echinodermata
Echinoidea - sea urchins (1 transcript, 1 species)

Streptophyta
Eudicotyledons - eudicots (1 transcript, 1 species)

Apicomplexa
Coccidia - apicomplexans (1 transcript, 1 species)

 

 

 

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