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TPF view for zebrafish chromosome 11

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TPF revision information

Last updated:
September 30, 2020 at 3:00 PM Eastern Time
By:
ZFIN(sramachand)
Version:
152

Patches and alternate loci

  • Purple cell with +P icon: patch component
  • Orange cell with +A icon: alt loci component

Join legend

  • Serious alignment problem, requires review
  • Minor alignment problem
  • Excellent alignment, meets all defined criteria
  • Certificate submitted, not yet approved
  • Certificate submitted and approved
  • Valid, contained clone
  • Join not evaluated due to one accession not being finished
Current TPF view for zebrafish chromosome 11 (v. 152)
Accession Name Contig Center Status Join Align length Gaps Percent identical Comments
   FO744857.1 CH1073-47K1 CTG10420 MINUS pre 18,333 70 99.144 alignment exists; one or more unfinished sequences; >0 gap of 50bp or more, not simple sequence
   FP326665.10 ZFOS-2602E3 CTG10420 MINUS fin
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01072249.1 ? CTG10420 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01109530.1 ? CTG10420 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01109529.1 ? CTG10420 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01083369.1 ? CTG10420 None wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01072248.1 ? CTG10420 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01072247.1 ? CTG10420 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01072246.1 ? CTG10420 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01072245.1 ? CTG10420 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01072244.1 ? CTG10420 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01072243.1 ? CTG10420 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01072242.1 ? CTG10420 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01072241.1 ? CTG10420 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01072240.1 ? CTG10420 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01072239.1 ? CTG10420 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01072238.1 ? CTG10420 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01085324.1 ? CTG10420 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01085323.1 ? CTG10420 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
LO017730.1 ZFOS-2418A8 CTG10420 SC pre 8,442 3 99.988 alignment exists; one or more unfinished sequences
   CU633839.6 CH1073-79I11 CTG10420 MINUS fin 2,000 0 100
   CU633745.4 CH1073-387K14 CTG10420 MINUS fin 2,000 0 100
   FQ377655.17 CH1073-456M8 CTG10420 MINUS fin
GAP TYPE-3
CABZ01090377.1 ? CTG1054 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01090378.1 ? CTG1054 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01090379.1 ? CTG1054 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01090380.1 ? CTG1054 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01090381.1 ? CTG1054 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01079382.1 ? CTG1054 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01079383.1 ? CTG1054 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01079384.1 ? CTG1054 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01079385.1 ? CTG1054 None wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01061929.1 ? CTG1054 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01061928.1 ? CTG1054 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01061927.1 ? CTG1054 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01061926.1 ? CTG1054 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01061925.1 ? CTG1054 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01061924.1 ? CTG1054 MINUS wgs
   GAP TYPE-2 100 OPTICAL MAP
   CABZ01008508.1 ? CTG1054 MINUS
   GAP TYPE-2 100 OPTICAL MAP
   CABZ01008506.1 ? CTG1054 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01061934.1 ? CTG1054 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01061933.1 ? CTG1054 MINUS wgs 807 0 100 alignment length < 2000
   CU929297.14 CH211-90A2 CTG1054 MINUS fin 1,950 1 100 alignment length < 2000
CR855375.8 CH211-159E12 CTG1054 SC fin 2,000 0 100
   CU695207.5 DKEY-6D21 CTG1054 MINUS fin
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01008493.1 ? CTG1054 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01008492.1 ? CTG1054 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01008491.1 ? CTG1054 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01008490.1 ? CTG1054 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01008489.1 ? CTG1054 MINUS wgs
GAP TYPE-3
   CABZ01069325.1 ? WGSCTG399 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01069324.1 ? WGSCTG399 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01069323.1 ? WGSCTG399 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01069322.1 ? WGSCTG399 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01069321.1 ? WGSCTG399 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01069320.1 ? WGSCTG399 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01069319.1 ? WGSCTG399 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01069318.1 ? WGSCTG399 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01069317.1 ? WGSCTG399 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01069316.1 ? WGSCTG399 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01069315.1 ? WGSCTG399 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01069314.1 ? WGSCTG399 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01069313.1 ? WGSCTG399 MINUS wgs
GAP TYPE-3
CABZ01110832.1 ? WGSCTG400 None wgs
GAP TYPE-3
CABZ01061869.1 ? CTG1054_1 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01061870.1 ? CTG1054_1 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01061871.1 ? CTG1054_1 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01061872.1 ? CTG1054_1 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01061873.1 ? CTG1054_1 None wgs 23,677 7 99.992 alignment exists; one or more unfinished sequences; >0 gap of 50bp or more, not simple sequence
   FQ311892.7 CH73-206H6 CTG1054_1 MINUS pre
GAP TYPE-3
CABZ01111374.1 ? WGSCTG401 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01069099.1 ? WGSCTG401 None wgs
GAP TYPE-3
CABZ01069101.1 ? WGSCTG402 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01069102.1 ? WGSCTG402 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01069103.1 ? WGSCTG402 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01069104.1 ? WGSCTG402 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01069105.1 ? WGSCTG402 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01069106.1 ? WGSCTG402 None wgs
GAP TYPE-3
CABZ01066374.1 ? CTG1054_2 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01066375.1 ? CTG1054_2 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01066376.1 ? CTG1054_2 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01066377.1 ? CTG1054_2 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01066378.1 ? CTG1054_2 None wgs 10,587 69 96.940 alignment exists; one or more unfinished sequences; >0 gap of 500bp or more, not simple sequence; identity < 98%
FO704634.1 ZFOS-249C5 CTG1054_2 SC pre
   GAP TYPE-2 100 PAIRED ENDS
CABZ01066380.1 ? CTG1054_2 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01066381.1 ? CTG1054_2 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01066382.1 ? CTG1054_2 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01066383.1 ? CTG1054_2 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01066384.1 ? CTG1054_2 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01066385.1 ? CTG1054_2 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01066386.1 ? CTG1054_2 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01066387.1 ? CTG1054_2 None wgs
GAP TYPE-3
CABZ01088320.1 ? CTG10177 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CU633837.8 CH1073-280O20 CTG10177 SC fin 9,379 2 100
FQ482078.1 CH1073-274B24 CTG10177 SC fin 15,643 1 100
CABZ01088323.1 ? CTG10177 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01088324.1 ? CTG10177 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01088325.1 ? CTG10177 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01088326.1 ? CTG10177 None wgs
GAP TYPE-3
CABZ01088327.1 ? CTG10177_1 None wgs 8,344 18 99.760
CU914760.8 CH1073-475M10 CTG10177_1 SC fin 8,682 0 100
CABZ01088329.1 ? CTG10177_1 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01088330.1 ? CTG10177_1 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01088331.1 ? CTG10177_1 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01088332.1 ? CTG10177_1 None wgs
GAP TYPE-3
CABZ01071681.1 ? CTG1053 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01071682.1 ? CTG1053 None wgs
   GAP TYPE-2 100 PAIRED ENDS
FP245482.8 DKEY-101M16 CTG1053 SC fin 2,834 0 100 alignment exists; one or more unfinished sequences; half-dovetail of >50bp
FO704585.3 ZFOS-198G6 CTG1053 SC pre
   GAP TYPE-2 100 PAIRED ENDS
   FP325117.6 CH1073-417H6 CTG1053 MINUS fin 2,000 0 100
   FP340262.6 CH1073-427C19 CTG1053 MINUS fin
GAP TYPE-3
CABZ01073861.1 ? CTG1053_2 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01073862.1 ? CTG1053_2 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01073863.1 ? CTG1053_2 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01073864.1 ? CTG1053_2 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01073865.1 ? CTG1053_2 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01073866.1 ? CTG1053_2 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01073867.1 ? CTG1053_2 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01073868.1 ? CTG1053_2 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01073869.1 ? CTG1053_2 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01073870.1 ? CTG1053_2 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01073871.1 ? CTG1053_2 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01073872.1 ? CTG1053_2 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01073873.1 ? CTG1053_2 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01073874.1 ? CTG1053_2 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01073875.1 ? CTG1053_2 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01073876.1 ? CTG1053_2 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01073877.1 ? CTG1053_2 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01073878.1 ? CTG1053_2 None wgs 12,497 0 100
AL935272.17 CH211-266K22 CTG1053_2 SC fin 2,000 0 100
CU075911.7 CH73-303B9 CTG1053_2 SC fin 2,380 0 100
CR407597.19 DKEY-40C23 CTG1053_2 SC fin 6,070 0 100
CABZ01073899.1 ? CTG1053_2 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01073900.1 ? CTG1053_2 None wgs
GAP TYPE-3
   CABZ01112665.1 ? CTG2920 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01112664.1 ? CTG2920 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01112663.1 ? CTG2920 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01112662.1 ? CTG2920 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01112661.1 ? CTG2920 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01112660.1 ? CTG2920 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01112659.1 ? CTG2920 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01112658.1 ? CTG2920 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01070054.1 ? CTG2920 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01070053.1 ? CTG2920 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01070052.1 ? CTG2920 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01070051.1 ? CTG2920 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01070050.1 ? CTG2920 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01070049.1 ? CTG2920 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01070048.1 ? CTG2920 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01070047.1 ? CTG2920 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01070046.1 ? CTG2920 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01070045.1 ? CTG2920 MINUS wgs 7,675 1 99.987 half-dovetail of >50bp; >0 gap of 50bp or more, not simple sequence
   CR762474.8 CH211-189M13 CTG2920 MINUS fin 2,000 0 100
   CT573157.15 CH73-1M18 CTG2920 MINUS fin
   GAP TYPE-2 100 PAIRED ENDS
CABZ01000539.1 ? CTG2920 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01000540.1 ? CTG2920 None wgs
GAP TYPE-3
   CABZ01088251.1 ? WGSCTG405 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01088250.1 ? WGSCTG405 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01088249.1 ? WGSCTG405 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01088248.1 ? WGSCTG405 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01088247.1 ? WGSCTG405 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01088246.1 ? WGSCTG405 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01085068.1 ? WGSCTG405 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01085067.1 ? WGSCTG405 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01085066.1 ? WGSCTG405 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01085065.1 ? WGSCTG405 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01085064.1 ? WGSCTG405 MINUS wgs
GAP TYPE-3
   CABZ01092719.1 ? WGSCTG407 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01092718.1 ? WGSCTG407 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01092717.1 ? WGSCTG407 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01092716.1 ? WGSCTG407 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01092715.1 ? WGSCTG407 MINUS wgs
GAP TYPE-3
CABZ01055593.1 ? CTG10637 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01055594.1 ? CTG10637 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01055595.1 ? CTG10637 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01055596.1 ? CTG10637 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01055597.1 ? CTG10637 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01055598.1 ? CTG10637 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01055599.1 ? CTG10637 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01055600.1 ? CTG10637 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01055601.1 ? CTG10637 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01055602.1 ? CTG10637 None wgs 10,073 4 99.980 half-dovetail of >50bp
   CU928126.9 CH73-267C23 CTG10637 MINUS fin 6 0 N/A approved certificate; no overlap present
   CU929188.10 CH73-190F16 CTG10637 MINUS fin 5,310 2 100
FQ790208.5 CH1073-154P7 CTG10637 SC fin 2,000 0 100
   CR318593.16 CH211-160O17 CTG10637 MINUS fin 2,000 0 100
   CT583672.11 DKEY-190E14 CTG10637 MINUS fin 2,000 0 100
   FP236325.3 CH73-365C17 CTG10637 CONTAINED_TURNOUT in CABZ01055641.1 fin 4,498 2 100 contained sequence
CABZ01055641.1 ? CTG10637 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01055642.1 ? CTG10637 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01055643.1 ? CTG10637 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01055644.1 ? CTG10637 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01055645.1 ? CTG10637 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01055646.1 ? CTG10637 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01055647.1 ? CTG10637 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01055648.1 ? CTG10637 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01055649.1 ? CTG10637 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01055650.1 ? CTG10637 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01070398.1 ? CTG10637 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01070399.1 ? CTG10637 None wgs 12,886 3 100 alignment exists; one or more unfinished sequences; half-dovetail of >50bp
LO018448.1 ZFOS-1005G8 CTG10637 SC pre 15,811 2 100 alignment exists; one or more unfinished sequences
FQ790209.2 CH1073-155O13 CTG10637 SC fin 2,000 0 100
AL954313.6 CH211-257J20 CTG10637 SC fin 2,000 0 100
CU695201.6 CH73-290L19 CTG10637 SC fin 2,000 0 100
   CU633767.5 CH1073-182B19 CTG10637 MINUS fin 22,825 126 97.538 alignment exists; one or more unfinished sequences; >0 gap of 50bp or more, not simple sequence; identity < 98%
   FO704600.3 ZFOS-332A11 CTG10637 MINUS pre 14,781 73 98.180 alignment exists; one or more unfinished sequences; >0 gap of 50bp or more, not simple sequence
CU633810.6 CH1073-211D19 CTG10637 SC fin 2,000 0 100
CU694494.8 ZFOS-1468H2 CTG10637 SC fin 296 0 100 alignment length < 2000
FP245474.5 ZFOS-92F8 CTG10637 SC fin 6,877 35 98.386 alignment exists; one or more unfinished sequences; >0 gap of 500bp or more, not simple sequence
FO681388.2 CH1073-463I16 CTG10637 SC pre 23,146 2 100 alignment exists; one or more unfinished sequences
FP102459.3 CH1073-228F5 CTG10637 SC fin 6,485 0 100 alignment exists; one or more unfinished sequences
LO016978.1 ZFOS-271A12 CTG10637 SC pre
   FQ377948.5 CH1073-289A19 CTG10637 CONTAINED_TURNOUT in LO016978.1 fin 11,196 1 99.955 alignment exists; one or more unfinished sequences; contained sequence
   CR558302.9 DKEY-33M11 CTG10637 MINUS fin 2,000 0 100
CT573251.7 DKEY-35L10 CTG10637 SC fin 2,000 0 100
AL928619.6 CH211-63I20 CTG10637 SC fin 9,230 4 100
CT583691.9 ZFOS-302B3 CTG10637 SC fin 2,000 0 100
CR450797.9 CH211-80B12 CTG10637 SC fin 2,000 0 100
BX571768.19 DKEYP-2C4 CTG10637 SC fin 2,000 0 100
   BX248331.8 CH211-236D3 CTG10637 MINUS fin 1,456 0 99.931 alignment length < 2000
CT033790.16 CH211-125H11 CTG10637 SC fin 2,000 0 100
CU104650.5 CH211-236N23 CTG10637 SC fin 2,889 0 100
   CU062484.10 CH73-329L6 CTG10637 MINUS fin 2,000 0 100
CU929429.6 CH73-364L24 CTG10637 SC fin 235 4 98.723 identity < 99.6%; alignment length < 2000
   BX548162.13 DKEYP-90D11 CTG10637 MINUS fin 336 0 99.405 identity < 99.6%; alignment length < 2000
   FP101889.7 DKEY-80B14 CTG10637 MINUS fin 7,727 2 100 alignment exists; one or more unfinished sequences
LO017694.1 CH1073-87L24 CTG10637 SC pre
   CT573167.5 CH211-192F14 CTG10637 CONTAINED_TURNOUT in LO017694.1 fin 2,328 0 100 alignment exists; one or more unfinished sequences; contained sequence
CR450829.16 CH211-197G2 CTG10637 SC fin 1,935 1 100 alignment length < 2000
   BX255918.16 CH211-239I2 CTG10637 MINUS fin 1,053 0 99.810 alignment length < 2000
CR559931.21 DKEY-33G10 CTG10637 SC fin 9,528 15 99.423 identity < 99.6%
CU855733.11 CH73-40I7 CTG10637 SC fin 46,737 207 98.271 alignment exists; one or more unfinished sequences; >0 gap of 500bp or more, not simple sequence
FO704730.3 CH211-230D13 CTG10637 SC pre 6,909 1 100 alignment exists; one or more unfinished sequences; half-dovetail of >50bp
   CABZ01006708.1 ? CTG10637 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01075991.1 ? CTG10637 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01075992.1 ? CTG10637 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01075993.1 ? CTG10637 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01075994.1 ? CTG10637 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01075995.1 ? CTG10637 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01075996.1 ? CTG10637 None wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01006707.1 ? CTG10637 MINUS wgs 17,260 8 99.994 half-dovetail of >50bp
   BX323045.14 CH211-248I1 CTG10637 MINUS fin 2,000 1 100
   BX255969.8 DKEY-67M7 CTG10637 MINUS fin 2,000 0 100
   CT573239.9 CH73-112J3 CTG10637 MINUS fin 2,000 0 100
   BX248501.7 CH211-236O17 CTG10637 MINUS fin 2,000 0 100
   AL840638.9 DKEY-224J12 CTG10637 MINUS fin 10,670 0 100 alignment exists; one or more unfinished sequences
FO681393.2 CH1073-515D11 CTG10637 SC pre
   GAP TYPE-2 100 PAIRED ENDS
FO904935.1 CH1073-648H4 CTG10637 SC pre 19,185 3 99.995 alignment exists; one or more unfinished sequences
CU062501.10 CH73-204M7 CTG10637 SC fin 1,947 1 100 alignment length < 2000
CR381534.20 DKEY-246J7 CTG10637 SC fin 926 0 100 alignment length < 2000
CR392041.8 CH211-116C19 CTG10637 SC fin 2,000 0 100
   BX936438.22 CH211-255D18 CTG10637 MINUS fin 2,000 0 100
FQ976909.10 CH211-43F4 CTG10637 SC fin 2,000 0 100
   CR925817.13 CH211-253B8 CTG10637 MINUS fin 2,000 0 100
   CU633826.8 CH1073-430F17 CTG10637 MINUS fin 7,823 0 100
   CU929070.3 ZFOS-1451H6 CTG10637 MINUS fin 2,000 0 100
   FP016232.7 CH73-238C9 CTG10637 MINUS fin 32,924 1 100
   CR678040.15 DKEY-197I20 CTG10637 MINUS fin 2,000 0 100
   CU464206.7 DKEY-208D10 CTG10637 MINUS fin 1,973 0 100 alignment length < 2000
   CR628406.8 CH211-146A2 CTG10637 MINUS fin 2,000 0 100
   CT573198.6 CH211-174N22 CTG10637 MINUS fin 2,000 0 100
   CR931726.9 DKEYP-38E8 CTG10637 MINUS fin 2,000 0 100
   CR450813.5 CH211-268B10 CTG10637 MINUS fin 2,000 0 100
   CR352338.7 CH211-196L11 CTG10637 MINUS fin 2,000 0 100
   CR931978.18 CH211-213O6 CTG10637 MINUS fin 2,000 0 100
   CU468959.4 CH73-51F10 CTG10637 MINUS fin
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01021068.1 ? CTG10637 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01021067.1 ? CTG10637 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01021066.1 ? CTG10637 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01021065.1 ? CTG10637 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01021064.1 ? CTG10637 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01021063.1 ? CTG10637 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CR855338.5 CH211-247N2 CTG10637 MINUS fin 15,281 1 100 alignment exists; one or more unfinished sequences
FO681356.2 CH1073-397M10 CTG10637 SC pre 2,286 0 100 alignment exists; one or more unfinished sequences
   CR847563.12 CH211-202H14 CTG10637 MINUS fin 2,000 0 100
   CR762463.9 CH211-175D22 CTG10637 MINUS fin 1,904 1 100 alignment length < 2000
   AL929389.9 CH211-51H4 CTG10637 MINUS fin 3,813 0 100 alignment exists; one or more unfinished sequences
FO681353.2 CH1073-400P9 CTG10637 SC pre 3,703 0 100 alignment exists; one or more unfinished sequences; half-dovetail of >0bp and <=50bp
CABZ01048245.1 ? CTG10637 None wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01069233.1 ? CTG10637 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01069232.1 ? CTG10637 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01069231.1 ? CTG10637 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01069230.1 ? CTG10637 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01069229.1 ? CTG10637 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01069228.1 ? CTG10637 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01069227.1 ? CTG10637 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01069226.1 ? CTG10637 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01062565.1 ? CTG10637 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01062566.1 ? CTG10637 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01062567.1 ? CTG10637 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01062568.1 ? CTG10637 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01062569.1 ? CTG10637 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01062570.1 ? CTG10637 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01067900.1 ? CTG10637 None wgs 13,833 1 99.957 half-dovetail of >50bp
CU179643.5 CH211-3N24 CTG10637 SC fin 149,710 22 99.999
   CR788237.9 DKEY-75L11 CTG10637 MINUS fin 3,832 1 100 half-dovetail of >50bp
CABZ01064204.1 ? CTG10637 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01064205.1 ? CTG10637 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01064206.1 ? CTG10637 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01064207.1 ? CTG10637 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01064208.1 ? CTG10637 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01064209.1 ? CTG10637 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01064210.1 ? CTG10637 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01064211.1 ? CTG10637 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01064212.1 ? CTG10637 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01064213.1 ? CTG10637 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01064214.1 ? CTG10637 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01064215.1 ? CTG10637 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01064216.1 ? CTG10637 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01064217.1 ? CTG10637 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01064218.1 ? CTG10637 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01064219.1 ? CTG10637 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01064220.1 ? CTG10637 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01064221.1 ? CTG10637 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01064222.1 ? CTG10637 None wgs
GAP TYPE-3
   CABZ01079838.1 ? CTG2654 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01079837.1 ? CTG2654 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01079836.1 ? CTG2654 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01079835.1 ? CTG2654 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01079834.1 ? CTG2654 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01003474.1 ? CTG2654 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01003473.1 ? CTG2654 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01003472.1 ? CTG2654 MINUS wgs 2,611 0 100 alignment exists; one or more unfinished sequences
FQ377668.5 CH73-370L19 CTG2654 SC pre 22,349 1 100 alignment exists; one or more unfinished sequences
   BX927284.27 CH211-28A12 CTG2654 MINUS fin 101,443 15 100 alignment exists; one or more unfinished sequences
LO017853.1 DKEY-276L14 CTG2654 SC pre 41,384 6 99.998 alignment exists; one or more unfinished sequences
   BX005472.11 CH211-119C22 CTG2654 MINUS fin 1,996 1 100 alignment length < 2000
BX322638.6 DKEYP-114C5 CTG2654 SC fin 2,000 0 100
BX914222.9 DKEYP-108A2 CTG2654 SC fin 40,591 20 99.699 alignment exists; one or more unfinished sequences
FO704708.2 RP71-87N23 CTG2654 SC pre 20,564 13 99.869 alignment exists; one or more unfinished sequences; half-dovetail of >50bp
   CABZ01078649.1 ? CTG2654 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01078648.1 ? CTG2654 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01032005.1 ? CTG2654 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01032006.1 ? CTG2654 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01032007.1 ? CTG2654 None wgs
   GAP TYPE-2 100 PAIRED ENDS
FQ908265.1 CH73-176F6 CTG2654 SC fin 2,000 0 100
CR759789.8 CH211-153M1 CTG2654 SC fin 2,000 0 100
CT990625.10 CH211-89E4 CTG2654 SC fin 2,000 0 100
CR450841.7 DKEY-16N9 CTG2654 SC fin 2,000 0 100
CR678435.9 DKEY-5B23 CTG2654 SC fin 2,000 0 100
CR792451.27 CH211-153G16 CTG2654 SC fin 11,660 1 100 alignment exists; one or more unfinished sequences; >0 gap of 50bp or more, not simple sequence
FO834907.2 CH1073-152M22 CTG2654 SC pre 5,972 0 100 alignment exists; one or more unfinished sequences; half-dovetail of >0bp and <=50bp
CABZ01032050.1 ? CTG2654 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01032051.1 ? CTG2654 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01032052.1 ? CTG2654 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01032053.1 ? CTG2654 None wgs 754 0 100 half-dovetail of >0bp and <=50bp; alignment length < 2000
FQ790228.4 CH1073-41N23 CTG2654 SC fin 2,000 0 100
CR847973.9 DKEY-78P20 CTG2654 SC fin 2,000 0 100
BX324177.48 DKEY-23F9 CTG2654 SC fin 1,940 1 100 alignment length < 2000
CR556712.11 DKEY-28E7 CTG2654 SC fin 12,647 1 100
   CR848705.14 DKEY-8O15 CTG2654 MINUS fin 140 0 98.571 identity < 99.6%; alignment length < 2000
CT573236.7 CH211-206O5 CTG2654 SC fin 2,000 1 100
BX004880.9 CH211-69B7 CTG2654 SC fin 2,505 0 99.960
   BX469912.6 CH211-156L18 CTG2654 MINUS fin 4,770 0 100 alignment exists; one or more unfinished sequences
FO904934.4 CH1073-684G11 CTG2654 SC pre
   GAP TYPE-2 100 PAIRED ENDS
CABZ01022562.1 ? CTG2654 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01022563.1 ? CTG2654 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01022564.1 ? CTG2654 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01022565.1 ? CTG2654 None wgs
   GAP TYPE-2 100 PAIRED ENDS
LO017719.1 CH1073-201G9 CTG2654 SC pre 10,195 1 100 alignment exists; one or more unfinished sequences
BX000700.38 DKEY-27D5 CTG2654 SC fin
   GAP TYPE-2 100 PAIRED ENDS
CABZ01022568.1 ? CTG2654 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01022569.1 ? CTG2654 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CR450764.3 CH211-209F22 CTG2654 SC fin 2,000 0 100
BX004876.7 DKEY-11M19 CTG2654 SC fin 3,654 0 100
CR762408.7 CH211-214D11 CTG2654 SC fin 540 0 98.519 identity < 99.6%; alignment length < 2000
FQ790218.5 CH1073-18H17 CTG2654 SC fin 91 0 98.901 identity < 99.6%; alignment length < 2000
CR847923.9 DKEY-231N3 CTG2654 SC fin 2,000 0 99.950
BX004890.11 DKEY-9A6 CTG2654 SC fin 2,000 0 100
BX530062.10 DKEY-13M1 CTG2654 SC fin 2,000 0 100
BX640454.6 CH211-1A19 CTG2654 SC fin 2,000 0 100
CR555295.8 DKEY-45D22 CTG2654 SC fin 2,000 0 100
   AL928649.7 DKEY-71J7 CTG2654 MINUS fin 2,351 0 99.787
CT956066.7 CH73-109D7 CTG2654 SC fin 2,000 0 100
   BX000430.8 DKEY-9K12 CTG2654 MINUS fin 32,457 2 100
CR847939.13 CH211-262I1 CTG2654 SC fin 7,199 3 99.903
BX571942.11 DKEY-240A24 CTG2654 SC fin 652 0 98.620 identity < 99.6%; alignment length < 2000
CU459095.5 CH73-141D6 CTG2654 SC fin 61,990 5 99.997
CR550307.8 DKEY-174E10 CTG2654 SC fin 2,000 0 100
   CU459081.8 CH73-60H1 CTG2654 MINUS fin 2,000 0 100
FQ377907.6 CH1073-211M21 CTG2654 SC fin 2,000 0 100
CU019562.13 DKEY-6D5 CTG2654 SC fin 4,472 4 99.888 half-dovetail of >0bp and <=50bp
CR550302.16 DKEY-145I3 CTG2654 SC fin 87 1 98.851 half-dovetail of >50bp; >0 gap of 500bp or more, not simple sequence
   CABZ01035292.1 ? CTG2654 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01079504.1 ? CTG2654 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01079503.1 ? CTG2654 MINUS wgs
GAP TYPE-3
CABZ01083638.1 ? CTG1086 None wgs 10,224 27 99.394 half-dovetail of >50bp; >0 gap of 50bp or more, not simple sequence
   FP245473.4 ZFOS-1403H8 CTG1086 MINUS fin 591 0 99.492 identity < 99.6%; alignment length < 2000
   CU914784.11 CH1073-287G6 CTG1086 MINUS fin 2,000 0 100
CU929092.7 CH73-223I23 CTG1086 SC fin 2,000 0 100
CR385028.15 DKEY-184M12 CTG1086 SC fin 36,660 0 100
CT573268.9 DKEY-81L11 CTG1086 SC fin 2,000 0 100
   BX950873.9 CH211-119G22 CTG1086 MINUS fin 2,000 0 100
   FP016142.18 CH73-234I15 CTG1086 MINUS fin
   GAP TYPE-2 100 PAIRED ENDS
CABZ01066519.1 ? CTG1086 None wgs 48,109 13 99.994
   FP003590.14 CH73-92C7 CTG1086 MINUS fin 568 1 99.120 identity < 99.6%; alignment length < 2000
   CU855596.22 CH211-267H16 CTG1086 MINUS fin 2,000 0 100
CR848761.19 DKEY-205K8 CTG1086 SC fin 2,000 0 100
CR854846.8 DKEY-228N9 CTG1086 SC fin 1,999 1 100 alignment length < 2000
CR854847.7 DKEY-266L9 CTG1086 SC fin 2,000 0 100
CR339047.8 CH211-12K8 CTG1086 SC fin 2,000 0 100
AL844563.15 DKEY-5O10 CTG1086 SC fin 10,646 0 100
CT573232.7 DKEY-188A10 CTG1086 SC fin 2,000 0 100
CT955969.9 DKEYP-74F12 CTG1086 SC fin 3,623 1 99.972
   CR847506.9 CH211-225N13 CTG1086 MINUS fin 2,000 0 100
CT573310.9 DKEY-168M18 CTG1086 SC fin 2,000 0 100
CR769769.7 CH211-190H11 CTG1086 SC fin 106,326 14 100 >0 gap of 25bp or more, not simple sequence
CU013545.15 CH211-130F2 CTG1086 SC fin 1,210 1 99.835 alignment length < 2000
CR631124.14 DKEY-52E24 CTG1086 SC fin 2,000 0 100
BX571952.13 DKEY-35E8 CTG1086 SC fin 225 1 98.222 identity < 99.6%; alignment length < 2000
CT033822.13 CH211-198D15 CTG1086 SC fin 2,000 0 100
   AL954814.17 DKEY-79I1 CTG1086 MINUS fin 2,000 0 100
   CR589944.10 CH211-14I3 CTG1086 MINUS fin 2,000 0 100
FO704605.2 CH1073-422K18 CTG1086 SC fin 24,003 2 99.988
   CABZ01034793.1 ? CTG1086 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01034792.1 ? CTG1086 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01034791.1 ? CTG1086 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
LO018315.1 DKEY-179K5 CTG1086 SC pre 13,668 85 97.995 alignment exists; one or more unfinished sequences; half-dovetail of >50bp; >0 gap of 500bp or more, not simple sequence; identity < 98%
BX005175.8 DKEY-14H17 CTG1086 SC fin 2,000 0 100
BX296530.7 DKEY-22H2 CTG1086 SC fin 2,000 0 100
CU929093.5 CH73-239L4 CTG1086 SC fin 2,000 0 100
CU207354.9 DKEY-219E24 CTG1086 SC fin 461 0 99.566 identity < 99.6%; alignment length < 2000
   BX294166.6 CH211-244D20 CTG1086 MINUS fin 468 1 99.786 alignment length < 2000
   CR932038.11 DKEY-232K16 CTG1086 MINUS fin 2,000 0 100
   AL935040.6 CH211-176L21 CTG1086 MINUS fin 2,000 0 100
   CT737428.5 CH73-233C15 CTG1086 MINUS fin 366 0 98.361 identity < 99.6%; alignment length < 2000
   BX000993.7 DKEY-88I22 CTG1086 MINUS fin 2,000 0 100
   BX511159.15 CH211-284M9 CTG1086 MINUS fin 295 0 99.661 alignment length < 2000
   CR450834.6 CH211-237B9 CTG1086 MINUS fin 2,000 0 100
   CT573166.7 CH211-140E24 CTG1086 MINUS fin 465 0 100 alignment length < 2000
   BX324130.6 DKEY-30J16 CTG1086 MINUS fin 2,000 0 100
CU914143.13 CH211-39D24 CTG1086 SC fin 10,079 0 100
CR407702.15 DKEY-171M10 CTG1086 SC fin 352 0 98.580 identity < 99.6%; alignment length < 2000
BX276115.12 DKEY-274M17 CTG1086 SC fin 2,000 1 100
CU019544.14 CH211-146M8 CTG1086 SC fin 168 2 100 alignment length < 2000
   CU074418.11 CH73-20D8 CTG1086 MINUS fin 62,488 7 100 alignment exists; one or more unfinished sequences
LO017800.1 CH73-43M12 CTG1086 SC pre 26,284 5 100 alignment exists; one or more unfinished sequences
   CR931959.16 DKEY-261G17 CTG1086 MINUS fin 2,000 0 100
   BX640470.7 CH211-205H10 CTG1086 MINUS fin 2,000 0 100
   BX571709.23 DKEY-251M8 CTG1086 MINUS fin 1,997 2 100 alignment length < 2000
CU914616.5 CH73-368A23 CTG1086 SC fin 2,000 0 100
CU633621.14 CH1073-395N8 CTG1086 SC fin 2,000 0 100
CU633475.6 CH73-61H9 CTG1086 SC fin 2,000 0 100
   CU861475.7 CH73-99D15 CTG1086 MINUS fin 15,792 9 99.987
   CABZ01059237.1 ? CTG1086 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01059236.1 ? CTG1086 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01059235.1 ? CTG1086 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01059234.1 ? CTG1086 MINUS wgs
GAP TYPE-3
CABZ01008730.1 ? WGSCTG415 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01008731.1 ? WGSCTG415 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01008732.1 ? WGSCTG415 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01008733.1 ? WGSCTG415 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01008734.1 ? WGSCTG415 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01008736.1 ? WGSCTG415 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01008737.1 ? WGSCTG415 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01008738.1 ? WGSCTG415 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01008739.1 ? WGSCTG415 None wgs
GAP TYPE-3
CABZ01035587.1 ? CTG1135 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01035588.1 ? CTG1135 None wgs
   FO704594.1 CH1073-498F19 CTG1135 CONTAINED_TURNOUT in CABZ01035588.1 pre 35,691 4 100 alignment exists; one or more unfinished sequences; contained sequence
CU459075.11 CH211-158F7 CTG1135 SC fin 55,895 3 100
   BX321912.5 DKEYP-32H12 CTG1135 MINUS fin 2,000 0 100
   CT573238.7 CH211-63D14 CTG1135 MINUS fin 2,000 0 100
   CR848745.16 DKEY-85P17 CTG1135 MINUS fin 2,000 1 100
BX537291.11 DKEY-127K10 CTG1135 SC fin 2,000 0 100
   CR812468.17 CH211-252P18 CTG1135 MINUS fin 2,000 0 100
   CT573222.14 CH211-56O1 CTG1135 MINUS fin 2,000 0 100
   BX571833.6 DKEY-287J13 CTG1135 MINUS fin 2,000 0 100
   CR932058.7 DKEY-22M14 CTG1135 MINUS fin 2,000 0 100
   CR853302.11 DKEY-91M3 CTG1135 MINUS fin 2,000 0 100
   CR394553.7 DKEY-105C22 CTG1135 MINUS fin 2,000 0 100
   BX537126.6 DKEYP-100E7 CTG1135 MINUS fin 1,998 1 99.950 alignment length < 2000
   BX537143.5 CH211-86H15 CTG1135 MINUS fin 2,000 0 100
   CT573184.5 DKEY-90L21 CTG1135 MINUS fin 2,000 0 100
CR848816.12 DKEY-99F10 CTG1135 SC fin 2,000 0 100
   CU861893.7 CH73-168D12 CTG1135 MINUS fin 2,000 0 100
   BX571949.21 DKEY-25F1 CTG1135 MINUS fin 2,000 0 100
   BX545854.10 CH211-195N8 CTG1135 MINUS fin 2,000 0 100
   CT583669.5 CH211-268B19 CTG1135 MINUS fin 2,000 0 100
   CR555297.6 DKEY-193O6 CTG1135 MINUS fin 2,000 0 100
   BX530015.9 DKEY-262K23 CTG1135 MINUS fin 2,000 0 100
   BX571675.5 DKEY-235D17 CTG1135 MINUS fin 110,511 473 98.300 approved certificate; >0 gap of 500bp or more, not simple sequence
CR848707.6 CH211-276P5 CTG1135 SC fin
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01086819.1 ? CTG1135 MINUS wgs 9,346 0 100 half-dovetail of >0bp and <=50bp
CU468724.4 CH73-21D24 CTG1135 SC fin 28,049 2 99.996 half-dovetail of >0bp and <=50bp
   CABZ01086816.1 ? CTG1135 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01086815.1 ? CTG1135 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01022045.1 ? CTG1135 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01022044.1 ? CTG1135 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01022043.1 ? CTG1135 MINUS wgs 19,028 3 99.900 alignment exists; one or more unfinished sequences; half-dovetail of >50bp
LO016980.1 CH211-262D5 CTG1135 SC pre 78,663 10 100 alignment exists; one or more unfinished sequences
CR354444.17 DKEY-158N23 CTG1135 SC fin 2,000 0 100
   CU695205.10 CH73-73I11 CTG1135 MINUS fin
   GAP TYPE-2 100 OPTICAL MAP
   CABZ01085705.1 ? CTG1135 MINUS wgs
   FO704593.2 ZFOS-2742F3 CTG1135 CONTAINED_TURNOUT in CABZ01085705.1 fin 20,010 8 99.955 contained sequence
CU571319.15 CH73-169D4 CTG1135 SC fin
   GAP TYPE-2 100 PAIRED ENDS
CABZ01027517.1 ? CTG1135 None wgs 17,666 4 99.994 half-dovetail of >50bp
   FP102969.5 CH73-55C21 CTG1135 MINUS fin 761 0 99.869 half-dovetail of >0bp and <=50bp; alignment length < 2000
   AL831791.6 DKEY-76P14 CTG1135 MINUS fin 276 2 98.188 identity < 99.6%; alignment length < 2000
   BX001056.7 CH211-15P9 CTG1135 MINUS fin 2,000 0 100
BX072564.4 DKEY-27B23 CTG1135 SC fin 21,696 0 100
CR812923.9 DKEY-13G7 CTG1135 SC fin 2,000 0 100
CR628365.6 CH211-137O16 CTG1135 SC fin 2,000 0 100
CR848671.5 CH211-274P22 CTG1135 SC fin 2,000 0 100
CR555298.10 CH211-25D12 CTG1135 SC fin 2,000 0 100
CR548630.7 CH211-232B12 CTG1135 SC fin 2,000 0 100
CR932000.4 DKEYP-97E7 CTG1135 SC fin 2,000 0 100
CT573282.6 DKEY-245F22 CTG1135 SC fin 2,000 0 100
   CR933820.6 DKEY-183J2 CTG1135 MINUS fin 51,597 1 100
BX323850.16 DKEY-156A5 CTG1135 SC fin 2,000 0 100
BX927392.9 DKEY-17E11 CTG1135 SC fin 2,000 0 100
CR318604.12 CH211-222E24 CTG1135 SC fin 2,000 0 100
   BX005135.5 CH211-89P16 CTG1135 MINUS fin 886 7 98.307 half-dovetail of >0bp and <=50bp; identity < 99.6%; alignment length < 2000
BX950859.13 CH211-134M1 CTG1135 SC fin 2,000 0 100
CU467888.19 DKEY-57N24 CTG1135 SC fin 2,000 0 100
   CR847934.9 CH211-202F21 CTG1135 MINUS fin 2,000 0 100
   CR933786.10 CH211-44M8 CTG1135 MINUS fin 2,000 0 100
AL928964.7 CH211-127I19 CTG1135 SC fin 61,618 2 100 alignment exists; one or more unfinished sequences
LO017880.2 DKEY-116F14 CTG1135 SC pre 33,570 2 99.997 alignment exists; one or more unfinished sequences; >0 gap of 50bp or more, not simple sequence
   CR555293.9 DKEY-23P14 CTG1135 MINUS fin 2,000 0 100
CR548622.8 DKEY-189A9 CTG1135 SC fin 2,000 0 100
   CR931782.9 CH211-126H24 CTG1135 MINUS fin 2,000 0 100
BX601648.8 DKEY-14F19 CTG1135 SC fin 2,000 0 100
   CR792452.7 CH211-198P5 CTG1135 MINUS fin 2,000 0 100
   BX248318.9 CH211-220M17 CTG1135 MINUS fin 2,000 0 100
   CR933558.6 DKEY-165M5 CTG1135 MINUS fin 2,000 0 100
   CR846088.7 DKEY-189L3 CTG1135 MINUS fin 2,000 0 100
   CR450786.7 CH211-69J23 CTG1135 MINUS fin 25,983 1 100
   BX649345.16 DKEY-161F11 CTG1135 MINUS fin 2,000 0 100
BX470199.6 CH211-226M7 CTG1135 SC fin 2,000 0 100
   CR678065.5 DKEY-238D19 CTG1135 MINUS fin 1,946 1 100 alignment length < 2000
   CU855783.5 CH1073-508K1 CTG1135 MINUS fin 2,000 0 100
   CU633783.11 CH73-253N14 CTG1135 MINUS fin 2,000 0 100
   BX914203.24 CH211-22E19 CTG1135 MINUS fin 2,000 0 100
BX537130.6 DKEY-104I23 CTG1135 SC fin 1,992 1 100 alignment length < 2000
   CR450796.7 CH211-9N7 CTG1135 MINUS fin 2,000 0 100
   CR848030.10 DKEY-66P15 CTG1135 MINUS fin 2,000 0 100
   BX548000.6 CH211-199M8 CTG1135 MINUS fin 2,000 1 100
   CR847975.7 DKEY-196G21 CTG1135 MINUS fin 2,000 0 100
   CR352256.11 CH211-218G23 CTG1135 MINUS fin 2,000 0 100
   CR450831.4 CH211-79O8 CTG1135 MINUS fin 87,432 9 99.999 alignment exists; one or more unfinished sequences
   FO704824.2 CH73-364A3 CTG1135 MINUS pre
GAP TYPE-3
CABZ01019694.1 ? CTG1105 None wgs 26,228 8 99.943
   CU652893.6 CH73-226L13 CTG1105 MINUS fin 2,000 0 100
   CR318645.2 CH211-161F7 CTG1105 MINUS fin 2,000 1 100
   CR790368.17 DKEY-163F14 CTG1105 MINUS fin 2,000 0 100
BX323548.13 DKEY-31D5 CTG1105 SC fin 2,000 1 100
   CR848823.5 DKEY-218G22 CTG1105 MINUS fin 2,000 0 100
   CR556713.11 DKEY-28O14 CTG1105 MINUS fin 2,000 0 100
   CT573143.8 CH211-74A19 CTG1105 MINUS fin 2,000 0 100
   CR769763.8 CH211-200N13 CTG1105 MINUS fin 2,000 0 100
   CR855274.12 DKEY-69N2 CTG1105 MINUS fin 78,686 16 99.936 alignment exists; one or more unfinished sequences
   LO018314.3 DKEY-123L5 CTG1105 MINUS pre
   GAP TYPE-2 100 PAIRED ENDS
CABZ01064432.1 ? CTG1105 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01069581.1 ? CTG1105 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01069582.1 ? CTG1105 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01069583.1 ? CTG1105 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01069584.1 ? CTG1105 None wgs
   GAP TYPE-2 100 PAIRED ENDS
   CU928136.6 CH1073-422P13 CTG1105 MINUS fin 2,000 0 100
   CR847925.24 DKEY-238I5 CTG1105 MINUS fin 2,000 0 100
   CT573183.34 DKEY-33G16 CTG1105 MINUS fin 2,000 0 100
   AL928980.7 DKEY-77M16 CTG1105 MINUS fin 2,000 0 100
   CU929323.7 CH73-341B3 CTG1105 MINUS fin 5,644 0 100 alignment exists; one or more unfinished sequences
FO704610.1 CH1073-435I13 CTG1105 SC pre 7,378 7 100 alignment exists; one or more unfinished sequences; half-dovetail of >50bp
CABZ01073077.1 ? CTG1105 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01073078.1 ? CTG1105 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01073079.1 ? CTG1105 None wgs
   GAP TYPE-2 100 OPTICAL MAP
   CABZ01011420.1 ? CTG1105 MINUS wgs 9,776 4 100
   CU914626.5 CH1073-202H20 CTG1105 MINUS fin
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01011417.1 ? CTG1105 MINUS wgs 5,682 2 100
CU915262.3 CH1073-276J17 CTG1105 SC fin 2,000 0 100
AL844172.8 DKEY-223H12 CTG1105 SC fin 1,999 0 100 alignment length < 2000
CR556714.5 DKEY-29P13 CTG1105 SC fin 2,000 0 100
CR933729.6 CH211-287E24 CTG1105 SC fin 776 0 99.742 half-dovetail of >50bp
   CABZ01011394.1 ? CTG1105 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01011393.1 ? CTG1105 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01011392.1 ? CTG1105 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01011391.1 ? CTG1105 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01011390.1 ? CTG1105 MINUS wgs 4,956 0 99.980 half-dovetail of >0bp and <=50bp
CT817803.8 DKEY-114G13 CTG1105 SC fin 2,000 0 100
CR450825.5 DKEY-117B24 CTG1105 SC fin 2,000 0 100
CR589875.9 DKEY-15K16 CTG1105 SC fin 2,000 0 100
CR931781.10 DKEYP-71H2 CTG1105 SC fin 2,000 0 100
   BX000696.19 CH211-107E16 CTG1105 MINUS fin 2,000 0 100
FP245467.5 CH73-204H6 CTG1105 SC fin
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01067942.1 ? CTG1105 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01067941.1 ? CTG1105 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01067940.1 ? CTG1105 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01067939.1 ? CTG1105 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01067938.1 ? CTG1105 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01067937.1 ? CTG1105 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01067936.1 ? CTG1105 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01067935.1 ? CTG1105 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01067934.1 ? CTG1105 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01067933.1 ? CTG1105 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01022536.1 ? CTG1105 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01022535.1 ? CTG1105 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01022534.1 ? CTG1105 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01022533.1 ? CTG1105 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01022532.1 ? CTG1105 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01022531.1 ? CTG1105 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01022530.1 ? CTG1105 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01022529.1 ? CTG1105 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01022528.1 ? CTG1105 MINUS wgs 8,991 3 99.900 alignment exists; one or more unfinished sequences; half-dovetail of >50bp
   FQ311935.5 CH73-67K24 CTG1105 MINUS pre 7,199 0 100 alignment exists; one or more unfinished sequences
   BX530032.13 DKEYP-92F10 CTG1105 MINUS fin 2,000 1 100
   BX119916.10 CH211-202I5 CTG1105 MINUS fin 2,000 0 100
   CU019552.6 CH73-242D19 CTG1105 MINUS fin 2,000 1 100
   CU633811.5 CH1073-319I24 CTG1105 MINUS fin 2,000 0 100
CU694209.13 CH73-17D15 CTG1105 SC fin 2,000 0 100
CR931783.22 DKEY-28D7 CTG1105 SC fin 2,000 0 100
   BX323597.9 CH211-227N13 CTG1105 MINUS fin 2,000 0 100
CR925698.8 DKEY-287I12 CTG1105 SC fin 9,322 0 100 alignment exists; one or more unfinished sequences
FO704590.2 ZFOS-273G12 CTG1105 SC pre 1,159 2 100 alignment exists; one or more unfinished sequences; half-dovetail of >50bp
   CABZ01055652.1 ? CTG1105 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01055651.1 ? CTG1105 MINUS wgs
   GAP TYPE-2 100 OPTICAL MAP
CABZ01111936.1 ? CTG1105
   GAP TYPE-2 100 PAIRED ENDS
CABZ01111935.1 ? CTG1105
   GAP TYPE-2 100 PAIRED ENDS
CABZ01078557.1 ? CTG1105 None wgs 11,057 3 99.973
CU694233.6 CH73-208B24 CTG1105 SC fin 2,000 0 100
   FO681390.2 CH1073-433H18 CTG1105 CONTAINED_TURNOUT in CABZ01078562.1 fin 18,507 11 99.935 contained sequence
CABZ01078562.1 ? CTG1105 None wgs
   GAP TYPE-2 100 OPTICAL MAP
CABZ01047849.1 ? CTG1105 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01047850.1 ? CTG1105 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01047851.1 ? CTG1105 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01047852.1 ? CTG1105 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01047853.1 ? CTG1105 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01047854.1 ? CTG1105 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01047855.1 ? CTG1105 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01047856.1 ? CTG1105 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01047857.1 ? CTG1105 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01047858.1 ? CTG1105 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01047859.1 ? CTG1105 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01047860.1 ? CTG1105 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01047861.1 ? CTG1105 None wgs 6,357 0 99.984 half-dovetail of >0bp and <=50bp
   BX548160.13 DKEY-25G11 CTG1105 MINUS fin 21,216 1 100 alignment exists; one or more unfinished sequences
   FO704861.3 CH73-333G9 CTG1105 MINUS pre 6 0 N/A one or more unfinished sequences; no overlap present
FQ311885.1 CH73-18L22 CTG1105 SC fin 217 0 98.618 identity < 99.6%; alignment length < 2000
BX005001.7 DKEY-202E22 CTG1105 SC fin 2,000 0 100
BX511264.7 DKEY-31O6 CTG1105 SC fin 2,000 0 100
CT963136.6 CH73-51I7 CTG1105 SC fin 2,000 0 100
CU929281.6 CH73-304G9 CTG1105 SC fin 6,754 2 99.837 half-dovetail of >50bp
CABZ01047904.1 ? CTG1105 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01047905.1 ? CTG1105 None wgs
   GAP TYPE-2 100 PAIRED ENDS
FQ323127.2 CH1073-346N11 CTG1105 SC fin 2,000 0 100
FP102275.4 CH73-138C4 CTG1105 SC fin 2,000 0 100
BX293991.12 CH211-261I24 CTG1105 SC fin 2,000 0 100
BX296566.5 CH211-196F4 CTG1105 SC fin 2,000 0 100
CR854834.11 DKEYP-92B10 CTG1105 SC fin 2,000 0 100
CR450823.9 CH211-241M2 CTG1105 SC fin 2,000 0 100
CU463181.5 CH73-321O16 CTG1105 SC fin 2,000 0 100
   BX914197.15 DKEYP-81F11 CTG1105 MINUS fin 2,000 0 100
CT737233.17 DKEYP-87F2 CTG1105 SC fin 2,000 0 100
CR933559.5 DKEY-51M8 CTG1105 SC fin 2,000 0 100
   BX323554.8 CH211-288H8 CTG1105 MINUS fin 2,000 0 100
   BX248230.21 CH211-213O11 CTG1105 MINUS fin 2,000 0 100
CU928222.7 DKEY-178D22 CTG1105 SC fin 2,000 0 100
   CR457444.6 CH211-11C3 CTG1105 MINUS fin 2,000 0 100
CU570874.8 CH211-241H7 CTG1105 SC fin 2,000 0 100
BX571969.5 DKEY-93P1 CTG1105 SC fin 6,284 0 100 alignment exists; one or more unfinished sequences
FQ323136.2 CH1073-381H22 CTG1105 SC pre 4,671 0 100 alignment exists; one or more unfinished sequences; half-dovetail of >50bp
CABZ01048890.1 ? CTG1105 None wgs
   GAP TYPE-2 100 OPTICAL MAP
LO017922.1 CH1073-770M22 CTG1105 SC pre 7,764 0 99.987 alignment exists; one or more unfinished sequences
   BX248521.12 CH211-243C14 CTG1105 MINUS fin 2,000 0 100
   CU914619.5 CH1073-278O19 CTG1105 MINUS fin 4,367 3 100
CABZ01065568.1 ? CTG1105 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01065569.1 ? CTG1105 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01065570.1 ? CTG1105 None wgs 11,284 63 98.298 half-dovetail of >50bp; >0 gap of 500bp or more, not simple sequence
   CR352285.4 CH211-210K13 CTG1105 MINUS fin 160 1 98.750 half-dovetail of >0bp and <=50bp; identity < 99.6%; alignment length < 2000
   CR936337.9 RP71-78K5 CTG1105 MINUS fin 2,000 0 100
   FP245471.7 CH73-295N8 CTG1105 MINUS fin 12,681 0 100
CABZ01065584.1 ? CTG1105 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01065585.1 ? CTG1105 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01065586.1 ? CTG1105 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01065587.1 ? CTG1105 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01065588.1 ? CTG1105 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01065589.1 ? CTG1105 None wgs
GAP TYPE-3
   CABZ01075921.1 ? CTG1140 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01075920.1 ? CTG1140 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01075919.1 ? CTG1140 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01075918.1 ? CTG1140 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01075917.1 ? CTG1140 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01075916.1 ? CTG1140 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01075915.1 ? CTG1140 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01075914.1 ? CTG1140 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01075913.1 ? CTG1140 MINUS wgs 8,883 2 100 half-dovetail of >0bp and <=50bp
   FQ482077.1 CH1073-21L24 CTG1140 MINUS fin 5,170 21 97.950 identity < 99.6%
   CR847984.14 DKEY-61O18 CTG1140 MINUS fin 2,000 0 100
BX005282.24 DKEY-37M22 CTG1140 SC fin 122 1 100 alignment length < 2000
AL929022.8 CH211-112F3 CTG1140 SC fin 1,998 1 100 alignment length < 2000
   AL928854.6 CH211-59D2 CTG1140 MINUS fin 2,000 0 100
   CR931939.21 DKEY-264P8 CTG1140 MINUS fin 2,000 0 100
   CR376849.29 CH211-145A9 CTG1140 MINUS fin 835 0 98.563 identity < 99.6%; alignment length < 2000
CR405711.13 DKEY-166C18 CTG1140 SC fin 190 0 99.474 identity < 99.6%; alignment length < 2000
FQ311877.5 CH73-112D7 CTG1140 SC fin 11,641 2 100
AL929286.13 CH211-117K10 CTG1140 SC fin 327 0 99.083 identity < 99.6%; alignment length < 2000
   BX248577.17 CH211-162H21 CTG1140 MINUS fin 4,265 0 100 alignment exists; one or more unfinished sequences
FO704581.1 ZFOS-2388D12 CTG1140 SC pre 1,841 6 98.479 alignment exists; one or more unfinished sequences; half-dovetail of >50bp
   CABZ01046909.1 ? CTG1140 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01046908.1 ? CTG1140 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01046912.1 ? CTG1140 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01023946.1 ? CTG1140 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01023945.1 ? CTG1140 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01023944.1 ? CTG1140 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01023943.1 ? CTG1140 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01023942.1 ? CTG1140 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01023941.1 ? CTG1140 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01023940.1 ? CTG1140 MINUS wgs 7,751 6 99.600 alignment exists; one or more unfinished sequences; half-dovetail of >50bp
FO744851.3 CH1073-185H19 CTG1140 SC pre
   BX842689.6 DKEY-96D22 CTG1140 CONTAINED_TURNOUT in FO744851.3 fin 2,745 0 100 alignment exists; one or more unfinished sequences; contained sequence
AL845324.16 CH211-122L14 CTG1140 SC fin 18,689 91 98.384 alignment exists; one or more unfinished sequences; half-dovetail of >50bp; >0 gap of 500bp or more, not simple sequence
FO704596.2 ZFOS-298G10 CTG1140 SC pre 3,357 3 98.540 alignment exists; one or more unfinished sequences; >0 gap of 50bp or more, not simple sequence
   FP102156.3 ZFOS-1388F10 CTG1140 MINUS fin 2,000 0 100
   CU633817.7 CH1073-250I23 CTG1140 MINUS fin 2,000 0 100
   CU210919.20 CH211-146F2 CTG1140 MINUS fin 10,782 7 99.694 alignment exists; one or more unfinished sequences
FO704714.1 CH73-158O8 CTG1140 SC pre 10,922 6 99.716 alignment exists; one or more unfinished sequences
   CABZ01044770.1 ? CTG1140 MINUS wgs
GAP TYPE-3
   CABZ01063359.1 ? CTG1125 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01063358.1 ? CTG1125 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01063357.1 ? CTG1125 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01063356.1 ? CTG1125 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01063355.1 ? CTG1125 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01063354.1 ? CTG1125 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01063353.1 ? CTG1125 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01063352.1 ? CTG1125 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01063351.1 ? CTG1125 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01063350.1 ? CTG1125 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01063349.1 ? CTG1125 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01063348.1 ? CTG1125 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01063347.1 ? CTG1125 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01063346.1 ? CTG1125 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01063345.1 ? CTG1125 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01063344.1 ? CTG1125 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01063343.1 ? CTG1125 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01063342.1 ? CTG1125 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01063341.1 ? CTG1125 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01063340.1 ? CTG1125 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01063339.1 ? CTG1125 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01062044.1 ? CTG1125 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01062043.1 ? CTG1125 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01062042.1 ? CTG1125 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01062041.1 ? CTG1125 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01062040.1 ? CTG1125 MINUS wgs 6,817 7 99.941 alignment exists; one or more unfinished sequences; half-dovetail of >0bp and <=50bp; >0 gap of 25bp or more, not simple sequence
LO017915.1 CH1073-275N18 CTG1125 SC pre 13,126 4 99.916 alignment exists; one or more unfinished sequences
FQ378035.5 CH1073-175M20 CTG1125 SC fin 67 0 100 alignment length < 2000
   CR847998.40 DKEY-205L13 CTG1125 MINUS fin
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01062019.1 ? CTG1125 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01089153.1 ? CTG1125 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01089154.1 ? CTG1125 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01089155.1 ? CTG1125 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01089156.1 ? CTG1125 None wgs
   GAP TYPE-2 100 OPTICAL MAP
   CABZ01038817.1 ? CTG1125 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01038816.1 ? CTG1125 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01038815.1 ? CTG1125 MINUS wgs 22,626 76 98.139 >0 gap of 500bp or more, not simple sequence
   AL929204.7 CH211-138E4 CTG1125 MINUS fin 662 0 98.943 identity < 99.6%; alignment length < 2000
CR762484.13 DKEY-264D12 CTG1125 SC fin 6,460 0 100
   CT033813.19 CH211-193I15 CTG1125 MINUS fin
   GAP TYPE-2 100 PAIRED ENDS
   CR848022.11 DKEY-207B20 CTG1125 MINUS fin 2,000 0 100
   CR926132.20 DKEYP-61B2 CTG1125 MINUS fin 2,000 0 100
   AL954137.19 CH211-222L21 CTG1125 MINUS fin 2,000 0 100
FP236327.7 CH73-277M3 CTG1125 SC fin 10,211 1 99.990 alignment exists; one or more unfinished sequences
FO904930.1 CH1073-596L21 CTG1125 SC pre
   GAP TYPE-2 100 PAIRED ENDS
CABZ01083815.1 ? CTG1125 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01083816.1 ? CTG1125 None wgs
GAP TYPE-3
   CABZ01044769.1 ? CTG48 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01044768.1 ? CTG48 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01044767.1 ? CTG48 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01044766.1 ? CTG48 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01044765.1 ? CTG48 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01044764.1 ? CTG48 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01044763.1 ? CTG48 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01044762.1 ? CTG48 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01044761.1 ? CTG48 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01044760.1 ? CTG48 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01044759.1 ? CTG48 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01044758.1 ? CTG48 MINUS wgs 4,362 0 100 half-dovetail of >0bp and <=50bp
   FP340267.29 CH73-126L22 CTG48 MINUS fin 4,769 2 99.979 >0 gap of 50bp or more, not simple sequence
   CABZ01077681.1 ? CTG48 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01077680.1 ? CTG48 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01077679.1 ? CTG48 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01077678.1 ? CTG48 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01077677.1 ? CTG48 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01077676.1 ? CTG48 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01077675.1 ? CTG48 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01077674.1 ? CTG48 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01077673.1 ? CTG48 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01077672.1 ? CTG48 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01077671.1 ? CTG48 MINUS wgs
GAP TYPE-3
   CABZ01087025.1 ? CTG1128 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01087024.1 ? CTG1128 MINUS wgs 5,787 0 100 half-dovetail of >50bp
CU929421.7 CH73-220M10 CTG1128 SC fin 1,000 0 100 alignment length < 2000
CU929137.10 CH73-132O13 CTG1128 SC fin 2,000 0 100
   CR759952.10 CH211-168O24 CTG1128 MINUS fin 40,222 162 98.486 alignment exists; one or more unfinished sequences; >0 gap of 500bp or more, not simple sequence
FO704713.3 CH211-190K22 CTG1128 SC pre 71,053 257 98.229 alignment exists; one or more unfinished sequences; half-dovetail of >50bp; >0 gap of 500bp or more, not simple sequence
BX571706.24 DKEYP-123H11 CTG1128 SC fin 2,000 0 100
CR847970.10 DKEY-220D24 CTG1128 SC fin 2,000 0 100
FQ377902.6 ZFOS-1570E12 CTG1128 SC fin 2,000 0 100
   CU571378.14 CH1073-231N5 CTG1128 MINUS fin 25,776 1 99.996 half-dovetail of >0bp and <=50bp
   CABZ01030895.1 ? CTG1128 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01030894.1 ? CTG1128 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01030893.1 ? CTG1128 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01030892.1 ? CTG1128 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01030891.1 ? CTG1128 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01030890.1 ? CTG1128 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01030889.1 ? CTG1128 MINUS wgs 13,413 7 99.955 alignment exists; one or more unfinished sequences; half-dovetail of >50bp
FO704569.2 ZFOS-174F7 CTG1128 SC pre 11,816 2 100 alignment exists; one or more unfinished sequences
   CU633996.7 CH1073-347B24 CTG1128 MINUS fin 1,999 1 100 alignment length < 2000
   CU633737.6 ZFOS-1132D4 CTG1128 MINUS fin 1,999 1 100 alignment length < 2000
AL929185.14 CH211-193L2 CTG1128 SC fin 2,000 0 100
   FP325130.4 CH1073-526C11 CTG1128 MINUS fin
GAP TYPE-3
   CABZ01030862.1 ? CTG2459 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01030861.1 ? CTG2459 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01030860.1 ? CTG2459 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01030859.1 ? CTG2459 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01030858.1 ? CTG2459 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01030857.1 ? CTG2459 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01030856.1 ? CTG2459 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01030855.1 ? CTG2459 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01030854.1 ? CTG2459 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01030853.1 ? CTG2459 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   FO704598.2 CH1073-390L10 CTG2459 MINUS pre 13,809 173 96.560 alignment exists; one or more unfinished sequences; >0 gap of 500bp or more, not simple sequence; identity < 98%
   CU138553.17 DKEY-284I7 CTG2459 MINUS fin 4,013 0 100
   CU855765.17 CH73-337C12 CTG2459 MINUS fin 2,000 0 100
CU633620.5 CH1073-36H12 CTG2459 SC fin 3,361 7 98.691 half-dovetail of >50bp
CABZ01092944.1 ? CTG2459 SC wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01092945.1 ? CTG2459
   GAP TYPE-2 100 PAIRED ENDS
CABZ01092946.1 ? CTG2459
   GAP TYPE-2 100 PAIRED ENDS
CABZ01077278.1 ? CTG2459 None wgs 8,074 1 99.950
   CU638695.6 CH1073-165F9 CTG2459 MINUS fin 2,000 0 100
   FP067440.6 CH73-104F13 CTG2459 MINUS fin 2,000 0 100
   FP017304.2 CH1073-157A10 CTG2459 MINUS fin 13,085 3 99.939
   CABZ01076724.1 ? CTG2459 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01076723.1 ? CTG2459 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01076722.1 ? CTG2459 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01076721.1 ? CTG2459 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01076720.1 ? CTG2459 MINUS wgs 1,213 0 99.835 alignment exists; one or more unfinished sequences; half-dovetail of >50bp
LO017916.2 CH1073-383M23 CTG2459 SC pre 9,797 62 98.449 alignment exists; one or more unfinished sequences; identity < 99.6%
   CU459189.8 CH211-174E22 CTG2459 MINUS fin 6 0 N/A approved certificate; no overlap present
CU459094.5 CH73-106K19 CTG2459 SC fin 2,000 0 100
CU633774.5 CH1073-358E8 CTG2459 SC fin 2,000 0 100
CU464202.4 CH1073-293O9 CTG2459 SC fin 2,000 0 100
FP325124.3 CH1073-20K20 CTG2459 SC fin 19,148 1 99.995 alignment exists; one or more unfinished sequences
FO704579.2 ZFOS-1850H3 CTG2459 SC pre 2,030 0 100 alignment exists; one or more unfinished sequences
CABZ01075863.1 ? CTG2459 None wgs
GAP TYPE-3
CABZ01069993.1 ? WGSCTG419 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01069994.1 ? WGSCTG419 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01069995.1 ? WGSCTG419 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01069996.1 ? WGSCTG419 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01069997.1 ? WGSCTG419 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01069998.1 ? WGSCTG419 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01069999.1 ? WGSCTG419 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01070000.1 ? WGSCTG419 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01070001.1 ? WGSCTG419 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01070002.1 ? WGSCTG419 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01070003.1 ? WGSCTG419 None wgs
GAP TYPE-3
CABZ01092980.1 ? WGSCTG420 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01092981.1 ? WGSCTG420 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01092982.1 ? WGSCTG420 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01092983.1 ? WGSCTG420 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01092984.1 ? WGSCTG420 None wgs
GAP TYPE-3
CABZ01080003.1 ? WGSCTG421 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01080004.1 ? WGSCTG421 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01080005.1 ? WGSCTG421 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01080006.1 ? WGSCTG421 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01080007.1 ? WGSCTG421 None wgs
GAP TYPE-3
CABZ01090072.1 ? WGSCTG422 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01090073.1 ? WGSCTG422 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01090074.1 ? WGSCTG422 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01090075.1 ? WGSCTG422 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01090076.1 ? WGSCTG422 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01090077.1 ? WGSCTG422 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01090078.1 ? WGSCTG422 None wgs
GAP TYPE-3
FO704577.2 ZFOS-1837D3 CTG10214 SC pre 2,839 0 100 alignment exists; one or more unfinished sequences
FP017152.4 CH1073-315J14 CTG10214 SC fin 2,000 0 100
CU655835.5 CH1073-219G2 CTG10214 SC fin 15,692 86 98.248 alignment exists; one or more unfinished sequences; >0 gap of 50bp or more, not simple sequence
FO834831.1 ZFOS-800B6 CTG10214 SC pre
   GAP TYPE-2 100 PAIRED ENDS
CABZ01079560.1 ? CTG10214 None wgs
GAP TYPE-3
   CABZ01058284.1 ? CTG10574 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01058283.1 ? CTG10574 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01058282.1 ? CTG10574 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01058281.1 ? CTG10574 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01058280.1 ? CTG10574 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01058279.1 ? CTG10574 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01058278.1 ? CTG10574 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01058277.1 ? CTG10574 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01058276.1 ? CTG10574 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01058275.1 ? CTG10574 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01058274.1 ? CTG10574 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
FO704586.2 ZFOS-2585F8 CTG10574 SC pre 2,205 6 99.184 alignment exists; one or more unfinished sequences; identity < 99.6%
   CU929458.6 CH73-342I7 CTG10574 MINUS fin 5,018 2 99.960 >0 gap of 50bp or more, not simple sequence
CABZ01072393.1 ? CTG10574 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01072394.1 ? CTG10574 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01072395.1 ? CTG10574 None wgs
   GAP TYPE-2 100 OPTICAL MAP
CABZ01074542.1 ? CTG10574 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01074543.1 ? CTG10574 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01074544.1 ? CTG10574 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01074545.1 ? CTG10574 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01074546.1 ? CTG10574 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01074547.1 ? CTG10574 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01074548.1 ? CTG10574 None wgs
   GAP TYPE-2 100 OPTICAL MAP
CABZ01083599.1 ? CTG10574 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01083600.1 ? CTG10574 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01080665.1 ? CTG10574 None wgs
   GAP TYPE-2 100 OPTICAL MAP
CABZ01080666.1 ? CTG10574 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01080667.1 ? CTG10574 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01080668.1 ? CTG10574 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01080669.1 ? CTG10574 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01080670.1 ? CTG10574 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01080671.1 ? CTG10574 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01080672.1 ? CTG10574 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01080673.1 ? CTG10574 None wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01086948.1 ? CTG10574 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01086947.1 ? CTG10574 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01086946.1 ? CTG10574 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01086945.1 ? CTG10574 MINUS wgs
   GAP TYPE-2 100 OPTICAL MAP
CABZ01073014.1 ? CTG10574
   GAP TYPE-2 100 PAIRED ENDS
CABZ01073015.1 ? CTG10574
   GAP TYPE-2 100 PAIRED ENDS
CABZ01073016.1 ? CTG10574
   GAP TYPE-2 100 PAIRED ENDS
CABZ01073017.1 ? CTG10574
   GAP TYPE-2 100 PAIRED ENDS
CABZ01112247.1 ? CTG10574 None wgs
   GAP TYPE-2 100 OPTICAL MAP
CABZ01112248.1 ? CTG10574 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01112249.1 ? CTG10574 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01112250.1 ? CTG10574 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01112253.1 ? CTG10574 None wgs
   GAP TYPE-2 100 OPTICAL MAP
CABZ01056744.1 ? CTG10574 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01056745.1 ? CTG10574 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01056746.1 ? CTG10574 None wgs
   GAP TYPE-2 100 OPTICAL MAP
CU862021.10 CH73-377H3 CTG10574 SC fin
   GAP TYPE-2 100 PAIRED ENDS
CABZ01072459.1 ? CTG10574 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01072458.1 ? CTG10574 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01072456.1 ? CTG10574 None wgs
   GAP TYPE-2 100 OPTICAL MAP
   CABZ01074214.1 ? CTG10574 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01074213.1 ? CTG10574 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01074212.1 ? CTG10574 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01074211.1 ? CTG10574 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01074210.1 ? CTG10574 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01074209.1 ? CTG10574 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01074208.1 ? CTG10574 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01074207.1 ? CTG10574 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01074206.1 ? CTG10574 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01074205.1 ? CTG10574 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01074204.1 ? CTG10574 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01074203.1 ? CTG10574 MINUS wgs
   GAP TYPE-2 100 OPTICAL MAP
   FP016005.20 CH211-57J17 CTG10574 MINUS fin 52 0 92.308 alignment exists; one or more unfinished sequences; half-dovetail of >50bp; identity < 98%
   FO704721.6 CH73-58G16 CTG10574 MINUS pre 22,189 20 99.639 alignment exists; one or more unfinished sequences; >0 gap of 50bp or more, not simple sequence
   CABZ01080074.1 ? CTG10574 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01080073.1 ? CTG10574 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01080072.1 ? CTG10574 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01080071.1 ? CTG10574 MINUS wgs
   GAP TYPE-2 100 OPTICAL MAP
CABZ01083326.1 ? CTG10574
   GAP TYPE-2 100 PAIRED ENDS
CABZ01117043.1 ? CTG10574
   GAP TYPE-2 100 PAIRED ENDS
CABZ01117044.1 ? CTG10574
GAP TYPE-3
CABZ01112726.1 ? WGSCTG431 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01112727.1 ? WGSCTG431 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01112728.1 ? WGSCTG431 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01112729.1 ? WGSCTG431 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01112730.1 ? WGSCTG431 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01112731.1 ? WGSCTG431 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01112732.1 ? WGSCTG431 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01112733.1 ? WGSCTG431 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01112734.1 ? WGSCTG431 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01112735.1 ? WGSCTG431 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01112736.1 ? WGSCTG431 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01112737.1 ? WGSCTG431 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01112738.1 ? WGSCTG431 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01112739.1 ? WGSCTG431 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01112740.1 ? WGSCTG431 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01112741.1 ? WGSCTG431 None wgs
GAP TYPE-3
   CABZ01100305.1 ? WGSCTG432 MINUS
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01100304.1 ? WGSCTG432 MINUS
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01100303.1 ? WGSCTG432 MINUS
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01100302.1 ? WGSCTG432 MINUS
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01100301.1 ? WGSCTG432 MINUS
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01100300.1 ? WGSCTG432 MINUS
   GAP TYPE-2 100 OPTICAL MAP
CABZ01100184.1 ? WGSCTG432 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01100185.1 ? WGSCTG432 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01100186.1 ? WGSCTG432 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01100187.1 ? WGSCTG432 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01100188.1 ? WGSCTG432 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01100189.1 ? WGSCTG432 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01100190.1 ? WGSCTG432 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01100191.1 ? WGSCTG432 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01100192.1 ? WGSCTG432 None wgs
GAP TYPE-3
   CABZ01017081.1 ? WGSCTG433 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01017080.1 ? WGSCTG433 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01093376.1 ? WGSCTG433 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01093375.1 ? WGSCTG433 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01093374.1 ? WGSCTG433 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01093373.1 ? WGSCTG433 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01093372.1 ? WGSCTG433 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01093371.1 ? WGSCTG433 MINUS wgs
GAP TYPE-3
CABZ01083102.1 ? WGSCTG434 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01083103.1 ? WGSCTG434 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01083104.1 ? WGSCTG434 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01083105.1 ? WGSCTG434 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01083106.1 ? WGSCTG434 None wgs
GAP TYPE-3
CABZ01113509.1 ? WGSCTG435 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01113510.1 ? WGSCTG435 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01113511.1 ? WGSCTG435 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01113513.1 ? WGSCTG435 None wgs
GAP TYPE-3
CABZ01100427.1 ? WGSCTG438 None wgs
   GAP TYPE-2 100 PAIRED ENDS
CABZ01100428.1 ? WGSCTG438 None wgs
GAP TYPE-3
   CABZ01039271.1 ? CTG1132 MINUS wgs
   GAP TYPE-2 100 OPTICAL MAP
   CABZ01039270.1 ? CTG1132 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01039269.1 ? CTG1132 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01039268.1 ? CTG1132 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01039267.1 ? CTG1132 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01039266.1 ? CTG1132 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01081658.1 ? CTG1132 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01081657.1 ? CTG1132 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01081656.1 ? CTG1132 MINUS wgs 9,439 3 99.788 alignment exists; one or more unfinished sequences
   FO538762.1 CH1073-365P7 CTG1132 MINUS pre 15,883 2 100 alignment exists; one or more unfinished sequences
   CABZ01081654.1 ? CTG1132 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01081653.1 ? CTG1132 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01061522.1 ? CTG1132 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01061521.1 ? CTG1132 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
FQ377901.17 ZFOS-1539G1 CTG1132 SC fin 2,000 0 100
CU207219.5 CH1073-474G22 CTG1132 SC fin 1,659 0 100 alignment length < 2000
   BX569779.35 CH211-113I9 CTG1132 MINUS fin 2,000 0 100
   CU633975.8 CH211-155A10 CTG1132 MINUS fin 23,047 171 98.104 alignment exists; one or more unfinished sequences; >0 gap of 500bp or more, not simple sequence
FO744859.3 CH73-177B11 CTG1132 SC pre 4,048 0 99.975 alignment exists; one or more unfinished sequences
CU633990.5 CH1073-160F22 CTG1132 SC fin 2,000 0 100
CU861455.9 CH1073-186H22 CTG1132 SC fin 6,975 3 100 alignment exists; one or more unfinished sequences
   LO017733.1 CH73-224E16 CTG1132 MINUS pre 1,150 0 100 alignment exists; one or more unfinished sequences; alignment length < 2000
   CABZ01078093.1 ? CTG1132 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
CR293511.11 DKEY-93H22 CTG1132 SC fin 137 0 98.540 half-dovetail of >0bp and <=50bp; identity < 99.6%; alignment length < 2000
CU929356.8 CH73-100D14 CTG1132 SC fin 8,478 3 99.882
   CABZ01078085.1 ? CTG1132 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01078084.1 ? CTG1132 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01078083.1 ? CTG1132 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01078082.1 ? CTG1132 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01078081.1 ? CTG1132 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01078080.1 ? CTG1132 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01078079.1 ? CTG1132 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01078078.1 ? CTG1132 MINUS wgs
   GAP TYPE-2 100 OPTICAL MAP
   CABZ01094849.1 ? CTG1132 MINUS
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01094848.1 ? CTG1132 MINUS
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01094847.1 ? CTG1132 MINUS
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01089803.1 ? CTG1132 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01089802.1 ? CTG1132 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01089801.1 ? CTG1132 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01089800.1 ? CTG1132 MINUS wgs
   GAP TYPE-2 100 OPTICAL MAP
   CABZ01074795.1 ? CTG1132 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01074794.1 ? CTG1132 MINUS wgs 1,448 0 100 half-dovetail of >50bp
FP325111.6 CH1073-232I9 CTG1132 SC fin 2,000 0 100
   CU459093.10 CH73-100L22 CTG1132 MINUS fin 2,000 0 100
FQ323135.7 CH1073-380G20 CTG1132 SC fin 1,440 0 100 alignment length < 2000
   CABZ01072478.1 ? CTG1132 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01072477.1 ? CTG1132 MINUS wgs
GAP TYPE-3
   CABZ01072476.1 ? CTG10017_1 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01072475.1 ? CTG10017_1 MINUS wgs 8,223 0 100
   FP085407.5 CH1073-209F24 CTG10017_1 MINUS fin
   GAP TYPE-2 100 PAIRED ENDS
   CABZ01029492.1 ? CTG10017_1 MINUS wgs
GAP TYPE-3
   CABZ01104435.1 ? WGSCTG439 MINUS wgs