Skip navigation and go to main content

Mouse Genome Issue MG-4261

Summary:
Fix patch for issue described in MG-3647
Description:
There is a gap between AC133654.4 and AC164883.5, this patch adds component FO082315.3 to the reference assembly providing ~9kb sequence to the gap.
Status:
Resolved (GRC-Duplicate)
Type:
Gap
Last updated:
2017-10-04
Affects version:
MGSCv37
Fix version:
GRCm39, GRCm38.p4, GRCm38.p6
Resolution:
There is an assembly gap between AC133654.4 and AC164883.5, originally described in MG-3647. This duplicate Jira issue is being used to manage an update at this gap that is being considered for patch release.

Patches and alternate loci

Scaffold type:
FIX patch to GRCm38
Comment:
This sequence will be incorporated into the reference assembly in the next major assembly release. At that time, the accession number for this patch will be made secondary to the reference chromosome accession. "This scaffold adds components FO907141.2, CAAA01119292.1, MF597732.1 and FO082315.3 to the reference assembly providing a complete representation for Baalc gene (NM_080640.5) and closing the gap in chromosome 15 (NC_000081.6) between components AC133654.4 and AC164883.5."
Revision history of patches and alts for MG-4261
Assembly Scaffold type Contig name GenBank accession RefSeq accession Region
GRCm38 FIX MG4261_PATCH KQ030493.2 Baalc
GRCm38.p4 FIX MG4261_PATCH KQ030493.1 NW_012132909.1 Baalc
GRCm38.p6 FIX MG4261_PATCH KQ030493.2 NW_012132909.2 Baalc

Locations and genomic context

Select a placement below to display it in the Sequence Viewer.
  • (View region: Ensembl | NCBI | UCSC)
  • (View region: Ensembl | NCBI | UCSC)