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Mouse Genome Issue MG-3686

Chr. X Gap Problem
There is a gap between CR478228.2 and CR392009.5
Resolved (GRC Resolved by Electronic Means)
Last updated:
Experiment type:
Clone Sequencing
Affects version:
Fix version:
GRCm39, GRCm38.p6
Sequences from LO016976.2, CAAA01134820.1, FO907132.1, FO907133.1, and MF597735.1 added to close the assembly gap between CR478228.2 and CR392009.5 in GRCm38 chromosome X (NC_000086.7) and to improve representation of Cylc1 (GeneID: 67407).

Patches and alternate loci

Scaffold type:
FIX patch to GRCm38
This sequence will be incorporated into the reference assembly in the next major assembly release. At that time, the accession number for this patch will be made secondary to the reference chromosome accession. This scaffold provides an ungapped path between GRCm38 chromosome X (NC_000086.7) components CR478228.2 and CR392009.5 and improves representation of Cylc1 (NM_026134.2).
Revision history of patches and alts for MG-3686
Assembly Scaffold type Contig name GenBank accession RefSeq accession Region
GRCm38 FIX MG3686_PATCH KZ289095.1 region99
GRCm38.p6 FIX MG3686_PATCH KZ289095.1 NW_019168534.1 region99

Locations and genomic context

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  • (View region: Ensembl | NCBI | UCSC)
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  • (View region: Ensembl | NCBI | UCSC)