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Mouse Genome Issue MG-3490

Summary:
GeneID: 100041194 (Ahnak2), poor quality (includes component misassembly)
Description:
Alignment of RefSeq Ahnak2 ( XM_001475946.1) to reference component AC124353.5 suggests that there could be a problem with the assembly of an unresolved tandem repeat
Status:
Resolved (GRC Resolved by Electronic Means)
Type:
Clone Problem
Last updated:
2017-10-12
Affects version:
MGSCv37
Fix version:
GRCm39, GRCm38.p6
Resolution:
Component MF597757.1 added to GRCm38 chromosome 12 (NC_000078.6) to improve representation of Ahnak2 (XM_017315330.1).

Patches and alternate loci

Scaffold type:
FIX patch to GRCm38
Comment:
This sequence will be incorporated into the reference assembly in the next major assembly release. At that time, the accession number for this patch will be made secondary to the reference chromosome accession. This scaffold adds MF597757.1 to GRCm38 chromosome 12 (NC_000078.6) to improve representation of Ahnak2 (XM_017315330.1).
Revision history of patches and alts for MG-3490
Assembly Scaffold type Contig name GenBank accession RefSeq accession Region
GRCm38 FIX MG3490_PATCH KZ289082.1 Ahnak2
GRCm38.p6 FIX MG3490_PATCH KZ289082.1 NW_019168521.1 Ahnak2

Locations and genomic context

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  • (View region: Ensembl | NCBI | UCSC)
  • (View region: Ensembl | NCBI | UCSC)