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Mouse Genome Issue MG-209

Summary:
GeneID: 224829 (Trerf1), poor quality (includes component misassembly)
Description:
AC112683.10 has a 1-nt insertion compared to NM_001097623.2 resulting in a frameshift and premature termination.
Status:
Resolved (GRC Resolved by Electronic Means)
Type:
Clone Problem
Last updated:
2017-10-12
Experiment type:
PCR
Affects version:
GRCm38
Fix version:
GRCm39, GRCm38.p6
Resolution:
Illumina scaffold MF597760.1 has been used to correct the insertion in AC112683.10 resolving the frameshift in Trerf1. Fix patch contig MG209_PATCH has been added to the Chr17 patches TPF.

Patches and alternate loci

Scaffold type:
FIX patch to GRCm38
Comment:
This sequence will be incorporated into the reference assembly in the next major assembly release. At that time, the accession number for this patch will be made secondary to the reference chromosome accession. "This scaffold uses MF597760.1, to correct an insertion in AC112683.10 resolving a frameshift in Trerf1 (NM_001097623.2 and NM_172622.3) on GRCm38 chromosome 17 (NC_000083.6)."
Revision history of patches and alts for MG-209
Assembly Scaffold type Contig name GenBank accession RefSeq accession Region
GRCm38 FIX MG209_PATCH KZ289088.1 Trerf1
GRCm38.p6 FIX MG209_PATCH KZ289088.1 NW_019168527.1 Trerf1

Locations and genomic context

Select a placement below to display it in the Sequence Viewer.
  • (View region: Ensembl | NCBI | UCSC)
  • (View region: Ensembl | NCBI | UCSC)